Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99999 * 85.00120 * 10 9 7 12 12 C 1.53000 * 109.47424 * 84.99501 * 11 10 9 13 13 C 1.52994 * 117.50267 * 243.75126 * 12 11 10 14 14 C 1.52998 * 117.50019 * 175.08658 * 12 11 10 15 15 S 1.65593 * 120.00395 * 264.99836 * 10 9 7 16 16 O 1.42100 * 106.40784 * 203.54110 * 15 10 9 17 17 O 1.42105 * 106.40278 * 336.46109 * 15 10 9 18 18 C 1.76196 * 107.22113 * 89.99978 * 15 10 9 19 19 C 1.38298 * 119.96539 * 89.99950 * 18 15 10 20 20 C 1.38257 * 120.12799 * 179.97438 * 19 18 15 21 21 C 1.38150 * 120.06668 * 0.02562 * 20 19 18 22 22 C 1.38798 * 119.93328 * 0.02562 * 21 20 19 23 23 N 1.40265 * 120.06461 * 180.02562 * 22 21 20 24 24 C 1.35068 * 127.38791 * 4.99789 * 23 22 21 25 25 N 1.30736 * 107.27200 * 179.97438 * 24 23 22 26 26 N 1.28417 * 110.64794 * 0.02562 * 25 24 23 27 27 N 1.28946 * 110.20440 * 359.74418 * 26 25 24 28 28 C 1.38101 * 119.97108 * 269.72876 * 18 15 10 29 29 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.08995 * 109.47474 * 205.00200 * 11 10 9 33 33 H 1.09003 * 109.46943 * 324.99971 * 11 10 9 34 34 H 1.09003 * 115.54578 * 29.42514 * 12 11 10 35 35 H 1.09005 * 117.49741 * 359.97438 * 13 12 11 36 36 H 1.09001 * 117.49975 * 145.01965 * 13 12 11 37 37 H 1.09006 * 117.50076 * 214.98034 * 14 12 11 38 38 H 1.09002 * 117.49955 * 0.02562 * 14 12 11 39 39 H 1.07995 * 119.94044 * 359.97438 * 19 18 15 40 40 H 1.08005 * 119.97198 * 180.02562 * 20 19 18 41 41 H 1.08003 * 120.03198 * 180.02562 * 21 20 19 42 42 H 1.08000 * 126.36163 * 359.94743 * 24 23 22 43 43 H 1.08006 * 120.02801 * 0.02562 * 28 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7629 -4.0976 1.2645 12 6 1.8032 -5.1103 1.8924 13 6 1.1747 -4.7470 3.2392 14 6 2.2618 -5.8222 3.1666 15 16 2.6460 -4.3233 -1.4280 16 8 3.0858 -5.6352 -1.1043 17 8 1.5964 -4.0607 -2.3493 18 6 4.0599 -3.4577 -2.0248 19 6 5.3281 -3.8731 -1.6619 20 6 6.4399 -3.1967 -2.1286 21 6 6.2868 -2.1031 -2.9588 22 6 5.0152 -1.6833 -3.3238 23 7 4.8565 -0.5737 -4.1670 24 6 5.8283 0.1348 -4.7818 25 7 5.2434 1.0806 -5.4692 26 7 3.9683 1.0187 -5.3306 27 7 3.6515 0.0365 -4.5576 28 6 3.9008 -2.3687 -2.8589 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 3.7240 -4.5762 1.0762 33 1 2.9023 -3.2583 1.9458 34 1 1.1940 -5.6789 1.1897 35 1 1.4453 -3.7866 3.6781 36 1 0.1521 -5.0768 3.4227 37 1 1.9540 -6.8590 3.3025 38 1 3.2472 -5.5688 3.5579 39 1 5.4503 -4.7274 -1.0127 40 1 7.4292 -3.5234 -1.8439 41 1 7.1557 -1.5754 -3.3234 42 1 6.8911 -0.0461 -4.7171 43 1 2.9102 -2.0472 -3.1452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069619473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = 112.451727 kcal Electronic energy + Delta-G solvation = -31034.589921 eV Core-core repulsion = 26825.316655 eV Total energy + Delta-G solvation = -4209.273266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.115 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.24873 -39.63376 -37.66194 -36.84649 -35.45552 -35.23996 -34.89684 -32.49832 -32.45487 -31.46589 -30.32969 -27.98388 -25.50156 -25.25939 -24.33125 -22.63409 -22.35200 -22.08879 -21.96489 -20.46432 -19.55266 -18.06991 -17.01680 -16.73388 -16.69671 -16.63338 -16.43647 -16.02562 -15.69549 -15.47909 -14.74335 -14.50979 -14.19562 -14.14630 -13.68623 -13.37877 -13.28568 -12.77177 -12.69601 -12.60519 -12.40131 -12.00718 -11.91929 -11.78428 -11.62193 -11.59859 -11.35121 -11.24161 -11.19748 -11.09133 -10.94893 -10.75368 -10.64369 -10.56471 -10.23571 -10.15164 -9.82319 -9.64586 -9.57987 -8.90140 -8.54756 -8.21082 -6.17440 -4.24207 0.13471 0.63467 0.89618 1.44477 1.65880 2.19501 3.11376 3.20260 3.27548 3.31261 3.50225 3.86530 4.02642 4.05023 4.15125 4.31576 4.46146 4.52662 4.62615 4.81273 4.87661 4.97939 5.13640 5.16332 5.19710 5.21623 5.26048 5.29012 5.55208 5.59271 5.72423 5.79901 5.82112 5.85395 5.95151 6.04479 6.05920 6.13400 6.32724 6.42957 6.54954 6.56202 7.23573 7.32500 7.51271 7.78408 8.06073 8.33151 8.79696 9.43004 10.90664 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.009386 B = 0.004599 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2982.540777 B = 6086.884170 C = 7894.365085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.243 3.757 10 N -0.973 5.973 11 C 0.162 3.838 12 C -0.161 4.161 13 C -0.175 4.175 14 C -0.181 4.181 15 S 2.685 3.315 16 O -0.968 6.968 17 O -0.948 6.948 18 C -0.647 4.647 19 C -0.015 4.015 20 C -0.121 4.121 21 C -0.075 4.075 22 C 0.103 3.897 23 N -0.323 5.323 24 C 0.217 3.783 25 N -0.333 5.333 26 N -0.038 5.038 27 N -0.055 5.055 28 C 0.022 3.978 29 H 0.265 0.735 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.238 0.762 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 -8.669 -0.030 16.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.122 3.878 10 N -0.812 5.812 11 C 0.035 3.965 12 C -0.181 4.181 13 C -0.212 4.212 14 C -0.219 4.219 15 S 2.772 3.228 16 O -0.958 6.958 17 O -0.939 6.939 18 C -0.730 4.730 19 C -0.035 4.035 20 C -0.141 4.141 21 C -0.096 4.096 22 C 0.010 3.990 23 N -0.114 5.114 24 C -0.080 4.080 25 N -0.181 5.181 26 N -0.033 5.033 27 N -0.040 5.040 28 C 0.001 3.999 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.157 0.843 42 H 0.254 0.746 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 12.731 -8.399 -0.998 15.285 hybrid contribution 1.751 1.169 0.518 2.168 sum 14.482 -7.230 -0.479 16.193 Atomic orbital electron populations 1.69910 1.05859 1.27135 1.49100 1.24845 0.94718 0.98854 0.94696 0.86678 0.79868 0.84283 0.78050 1.20190 1.20529 1.20690 1.21497 0.93358 0.90760 1.52804 0.92244 1.19328 0.87100 0.81304 1.00092 1.57380 1.56486 1.49390 1.17950 1.20687 0.93926 0.95776 0.86107 1.22783 1.02841 1.01517 0.90952 1.23023 0.97713 0.99749 1.00705 1.22922 0.99444 0.97444 1.02064 1.02295 0.73502 0.73388 0.73601 1.93542 1.83191 1.34750 1.84297 1.93590 1.52412 1.85436 1.62424 1.31500 1.18871 1.11598 1.11061 1.21123 0.90683 0.97113 0.94556 1.21081 0.99699 0.95287 0.98010 1.21063 0.94284 0.97116 0.97112 1.17587 0.95713 0.88395 0.97286 1.49086 1.06348 1.22683 1.33242 1.27352 0.98840 0.89734 0.92058 1.74441 1.00432 1.20846 1.22403 1.78113 1.06016 1.10196 1.09015 1.82923 1.02831 1.05555 1.12684 1.20789 0.99391 0.89752 0.90006 0.92473 0.93445 0.92807 0.91131 0.89527 0.87850 0.88456 0.89172 0.89129 0.88928 0.83411 0.83686 0.84342 0.74642 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 13.29 55.43 0.74 -24.10 16 2 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 3 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.54 -13.72 9.38 -34.44 -0.32 -14.05 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.24 5.67 5.44 -5.19 -0.03 5.64 16 10 N -0.97 -18.35 2.77 -115.66 -0.32 -18.67 16 11 C 0.16 2.53 5.62 -4.04 -0.02 2.51 16 12 C -0.16 -2.37 6.01 -90.62 -0.54 -2.91 16 13 C -0.17 -2.33 10.18 -26.70 -0.27 -2.60 16 14 C -0.18 -2.14 10.25 -26.69 -0.27 -2.41 16 15 S 2.69 48.90 5.65 -107.50 -0.61 48.30 16 16 O -0.97 -17.20 16.25 -57.17 -0.93 -18.13 16 17 O -0.95 -20.53 15.82 -57.17 -0.90 -21.44 16 18 C -0.65 -10.22 5.97 -39.61 -0.24 -10.46 16 19 C -0.01 -0.18 9.52 -39.55 -0.38 -0.56 16 20 C -0.12 -1.12 10.04 -39.61 -0.40 -1.52 16 21 C -0.07 -0.73 9.49 -39.41 -0.37 -1.10 16 22 C 0.10 1.46 6.70 -83.57 -0.56 0.90 16 23 N -0.32 -4.86 3.85 -11.74 -0.05 -4.91 16 24 C 0.22 2.53 12.15 -90.16 -1.10 1.43 16 25 N -0.33 -5.07 12.15 29.64 0.36 -4.71 16 26 N -0.04 -0.70 13.39 60.35 0.81 0.10 16 27 N -0.05 -1.04 13.35 60.35 0.81 -0.23 16 28 C 0.02 0.37 9.17 -39.41 -0.36 0.01 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.15 8.11 -51.93 -0.42 0.73 16 31 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 32 H 0.07 0.93 7.61 -51.93 -0.40 0.53 16 33 H 0.09 1.37 7.84 -51.93 -0.41 0.96 16 34 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.10 1.31 8.03 -51.93 -0.42 0.89 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.15 1.46 7.61 -52.49 -0.40 1.06 16 40 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.14 0.74 6.91 -52.48 -0.36 0.38 16 42 H 0.24 1.18 7.22 -52.49 -0.38 0.80 16 43 H 0.16 3.17 7.33 -52.48 -0.38 2.78 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -34.10 387.09 -9.43 -43.53 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.18 Total: 1.47 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -4.96 Total: -23.26 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 2.34 Total: -52.51 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -1.83 Total: -39.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 48.90 SS G_CDS: -0.61 Total: 48.30 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.10 -9.43 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069619473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.983 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds