Wall clock time and date at job start Tue Mar 31 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39692 * 120.16379 * 183.87419 * 3 2 1 5 5 C 1.37879 * 119.86684 * 180.27688 * 4 3 2 6 6 S 1.76193 * 119.88760 * 179.97438 * 5 4 3 7 7 O 1.42107 * 106.40433 * 23.58313 * 6 5 4 8 8 O 1.42105 * 106.40171 * 156.50528 * 6 5 4 9 9 N 1.65596 * 107.21873 * 270.04249 * 6 5 4 10 10 C 1.46500 * 120.00150 * 90.00266 * 9 6 5 11 11 C 1.50694 * 109.47482 * 94.99976 * 10 9 6 12 12 H 1.08000 * 120.00240 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00773 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99509 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00726 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47043 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47477 * 119.99355 * 15 13 11 18 18 H 1.48496 * 109.47450 * 239.99971 * 15 13 11 19 19 C 1.46498 * 120.00449 * 270.00295 * 9 6 5 20 20 C 1.50699 * 109.47354 * 94.99581 * 19 9 6 21 21 C 1.34518 * 125.78492 * 89.72037 * 20 19 9 22 22 C 1.41386 * 106.83606 * 179.89327 * 21 20 19 23 23 C 1.34515 * 106.84021 * 0.36834 * 22 21 20 24 24 O 1.34295 * 125.79202 * 270.02907 * 20 19 9 25 25 C 1.38438 * 120.21803 * 0.02562 * 5 4 3 26 26 C 1.38234 * 120.34806 * 359.95522 * 25 5 4 27 27 C 1.38273 * 120.12555 * 0.04682 * 26 25 5 28 28 F 1.35105 * 120.11265 * 179.97438 * 27 26 25 29 29 H 1.07994 * 120.06973 * 0.25469 * 4 3 2 30 30 H 1.09005 * 109.47720 * 215.00335 * 10 9 6 31 31 H 1.09003 * 109.46762 * 335.00024 * 10 9 6 32 32 H 0.96996 * 120.00323 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47775 * 215.00473 * 19 9 6 34 34 H 1.09010 * 109.46918 * 334.99896 * 19 9 6 35 35 H 1.07988 * 126.58185 * 0.02562 * 21 20 19 36 36 H 1.07997 * 126.57848 * 180.16717 * 22 21 20 37 37 H 1.08002 * 125.78371 * 179.74923 * 23 22 21 38 38 H 1.08002 * 119.82668 * 179.97438 * 25 5 4 39 39 H 1.08006 * 119.93483 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 1.2060 0.0816 5 6 4.6481 1.1998 0.0754 6 16 5.5333 2.7198 0.1776 7 8 4.6570 3.6540 0.7931 8 8 6.8182 2.4019 0.6948 9 7 5.7719 3.2533 -1.3718 10 6 4.7806 4.1248 -2.0073 11 6 5.1908 5.5642 -1.8317 12 1 6.0994 5.8057 -1.3002 13 6 4.4063 6.5729 -2.3494 14 7 3.3001 6.2788 -2.9971 15 14 4.9153 8.3570 -2.1323 16 1 6.1901 8.4192 -1.3731 17 1 5.1015 8.9844 -3.4653 18 1 3.8589 9.0858 -1.3853 19 6 6.9744 2.8538 -2.1072 20 6 6.6673 1.6453 -2.9536 21 6 6.2134 1.6665 -4.2197 22 6 6.0669 0.3199 -4.6247 23 6 6.4322 -0.4435 -3.5792 24 8 6.7949 0.3647 -2.5698 25 6 5.3392 0.0035 -0.0120 26 6 4.6542 -1.1945 -0.0928 27 6 3.2715 -1.2050 -0.0877 28 9 2.6023 -2.3760 -0.1672 29 1 2.7328 2.1407 0.1491 30 1 4.7198 3.8915 -3.0704 31 1 3.8068 3.9655 -1.5442 32 1 2.7483 6.9884 -3.3617 33 1 7.2975 3.6739 -2.7483 34 1 7.7682 2.6105 -1.4008 35 1 6.0035 2.5437 -4.8135 36 1 5.7241 -0.0289 -5.5876 37 1 6.4332 -1.5233 -3.5554 38 1 6.4192 0.0061 -0.0168 39 1 5.2001 -2.1240 -0.1603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069619477.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:58 Heat of formation + Delta-G solvation = -33.290631 kcal Electronic energy + Delta-G solvation = -30856.008123 eV Core-core repulsion = 26386.943276 eV Total energy + Delta-G solvation = -4469.064847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.073 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.50485 -42.36798 -39.47005 -36.92751 -36.60232 -36.12927 -35.43327 -32.87343 -32.62589 -31.87518 -31.22718 -30.18973 -27.33140 -25.12103 -24.53934 -23.55695 -22.53043 -21.52456 -20.50499 -20.09470 -18.38188 -17.82245 -17.40725 -17.15106 -17.04045 -16.54672 -16.29424 -16.20711 -15.88068 -15.35189 -14.60816 -14.48526 -14.47613 -13.98575 -13.96746 -13.86706 -13.49985 -13.41401 -13.05337 -12.80670 -12.78048 -12.63221 -12.56184 -12.36326 -12.05291 -11.87497 -11.79781 -11.55789 -11.33215 -11.20918 -10.91973 -10.80111 -10.64050 -10.13640 -9.96248 -9.74243 -9.52777 -9.42375 -8.54315 -8.45204 -8.31032 -6.15711 -4.20715 0.13134 0.54165 0.75501 1.85232 2.42287 2.45774 2.78524 3.11637 3.26583 3.28832 3.35450 3.38987 3.43734 3.54350 3.62990 4.08857 4.24362 4.37345 4.49896 4.75618 4.85773 4.96337 5.11218 5.15244 5.21024 5.21544 5.35970 5.42277 5.49758 5.61918 5.70371 5.88085 5.96913 6.04600 6.18526 6.24620 6.29672 6.67525 7.02191 7.16811 7.24382 7.31500 7.36136 7.80877 8.05987 8.82076 9.45685 10.92853 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.009281 B = 0.004356 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.258882 B = 6426.215637 C = 7514.931866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.253 3.747 3 C -0.083 4.083 4 C 0.063 3.937 5 C -0.690 4.690 6 S 2.683 3.317 7 O -0.930 6.930 8 O -0.964 6.964 9 N -0.972 5.972 10 C 0.253 3.747 11 C -0.532 4.532 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.282 1.282 19 C 0.199 3.801 20 C -0.033 4.033 21 C -0.186 4.186 22 C -0.213 4.213 23 C -0.050 4.050 24 O -0.178 6.178 25 C 0.047 3.953 26 C -0.175 4.175 27 C 0.192 3.808 28 F -0.122 7.122 29 H 0.163 0.837 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.197 0.803 38 H 0.158 0.842 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.064 -15.836 0.761 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.063 4.063 3 C -0.088 4.088 4 C 0.042 3.958 5 C -0.773 4.773 6 S 2.770 3.230 7 O -0.920 6.920 8 O -0.955 6.955 9 N -0.810 5.810 10 C 0.131 3.869 11 C -0.571 4.571 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.208 1.208 19 C 0.073 3.927 20 C -0.085 4.085 21 C -0.206 4.206 22 C -0.232 4.232 23 C -0.118 4.118 24 O -0.075 6.075 25 C 0.027 3.973 26 C -0.195 4.195 27 C 0.170 3.830 28 F -0.100 7.100 29 H 0.181 0.819 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.213 0.787 38 H 0.175 0.825 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.438 -15.491 1.719 16.507 hybrid contribution -0.215 0.011 -0.810 0.839 sum 5.223 -15.480 0.908 16.362 Atomic orbital electron populations 1.81243 1.11536 1.06127 1.08262 1.25156 0.92101 0.94727 0.94280 1.15974 0.85365 0.93776 1.13724 1.20983 0.92203 0.97415 0.85228 1.31661 1.05853 1.22445 1.17300 1.02522 0.73779 0.73033 0.73680 1.93642 1.66826 1.58066 1.73474 1.93528 1.38875 1.85295 1.77762 1.57643 1.30427 1.59996 1.32923 1.19235 0.85368 0.87862 0.94395 1.21466 1.09031 0.90468 1.36174 0.91711 1.24914 0.94692 0.99396 0.94781 1.69921 1.13553 1.33166 1.36492 0.86461 0.78880 0.84432 0.77809 1.19493 1.20989 1.20815 1.19734 0.87422 0.90202 0.95380 1.23375 1.05246 0.83516 0.96349 1.21729 1.04824 0.98008 0.96037 1.21841 1.07254 0.93469 1.00631 1.23894 1.04846 0.96221 0.86853 1.83982 1.67545 1.16330 1.39618 1.21051 1.01168 0.89712 0.85379 1.21153 0.91227 1.00628 1.06464 1.17841 0.90306 0.79808 0.95032 1.91574 1.80694 1.45309 1.92451 0.81932 0.93937 0.94156 0.92606 0.85790 0.88149 0.83117 0.83917 0.78671 0.82459 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.41 18.54 41.84 0.78 -5.64 16 2 C 0.25 3.64 14.98 -22.47 -0.34 3.31 16 3 C -0.08 -1.06 5.74 -106.82 -0.61 -1.68 16 4 C 0.06 0.86 9.23 -39.17 -0.36 0.50 16 5 C -0.69 -9.48 5.97 -39.64 -0.24 -9.71 16 6 S 2.68 45.90 5.64 -107.50 -0.61 45.29 16 7 O -0.93 -19.27 16.24 -57.17 -0.93 -20.19 16 8 O -0.96 -16.60 15.82 -57.17 -0.90 -17.50 16 9 N -0.97 -17.21 2.75 -116.95 -0.32 -17.53 16 10 C 0.25 5.55 5.10 -5.20 -0.03 5.53 16 11 C -0.53 -13.39 9.38 -34.44 -0.32 -13.72 16 12 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.20 2.92 6.21 -5.20 -0.03 2.89 16 20 C -0.03 -0.45 6.90 -35.62 -0.25 -0.70 16 21 C -0.19 -2.56 10.81 -39.70 -0.43 -2.99 16 22 C -0.21 -2.49 10.91 -39.70 -0.43 -2.92 16 23 C -0.05 -0.52 12.09 29.42 0.36 -0.16 16 24 O -0.18 -2.17 9.16 5.74 0.05 -2.11 16 25 C 0.05 0.51 8.32 -39.51 -0.33 0.19 16 26 C -0.18 -1.62 10.01 -39.57 -0.40 -2.02 16 27 C 0.19 2.11 7.28 -38.96 -0.28 1.83 16 28 F -0.12 -1.35 16.81 2.25 0.04 -1.31 16 29 H 0.16 2.27 7.61 -52.49 -0.40 1.87 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 31 H 0.04 0.95 7.61 -51.93 -0.40 0.55 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.12 1.76 8.11 -51.93 -0.42 1.34 16 34 H 0.10 1.31 6.92 -51.92 -0.36 0.95 16 35 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.53 7.32 -52.49 -0.38 1.14 16 39 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -31.35 371.51 -7.99 -39.33 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.62 Total: 0.37 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -3.79 Total: -18.05 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 1.19 Total: -46.88 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.78 Total: -39.81 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 45.90 SS G_CDS: -0.61 Total: 45.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.35 -7.99 -39.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069619477.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.040 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds