Wall clock time and date at job start Tue Mar 31 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36836 * 125.03216 * 2 1 4 4 H 0.96996 * 125.06604 * 0.03798 * 3 2 1 5 5 C 1.37691 * 109.86825 * 180.29647 * 3 2 1 6 6 C 1.39118 * 133.50763 * 179.71305 * 5 3 2 7 7 C 1.37743 * 119.78277 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66449 * 0.02562 * 7 6 5 9 9 C 1.36623 * 120.52598 * 359.97438 * 8 7 6 10 10 C 1.39627 * 119.76622 * 0.02562 * 9 8 7 11 11 C 1.34234 * 125.03316 * 179.82924 * 2 1 3 12 12 C 1.50693 * 126.50198 * 359.97438 * 11 2 1 13 13 C 1.50702 * 109.47405 * 269.68192 * 12 11 2 14 14 O 1.21284 * 119.99591 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00521 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99777 * 0.02562 * 15 13 12 17 17 C 1.50698 * 109.47176 * 269.99289 * 16 15 13 18 18 H 1.08006 * 120.00072 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99876 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99890 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46928 * 89.99909 * 21 19 17 23 23 H 1.48495 * 109.47091 * 209.99806 * 21 19 17 24 24 H 1.48495 * 109.47182 * 329.99856 * 21 19 17 25 25 C 1.46500 * 120.00149 * 180.02562 * 15 13 12 26 26 C 1.50706 * 109.46949 * 270.00461 * 25 15 13 27 27 C 1.38227 * 119.61528 * 94.73245 * 26 25 15 28 28 C 1.38631 * 119.15972 * 179.75508 * 27 26 25 29 29 C 1.38676 * 118.41875 * 0.50238 * 28 27 26 30 30 C 1.38177 * 119.16268 * 359.73245 * 29 28 27 31 31 N 1.31850 * 119.62066 * 274.99786 * 26 25 15 32 32 H 1.08998 * 109.47076 * 270.17063 * 1 2 3 33 33 H 1.09006 * 109.47075 * 30.16663 * 1 2 3 34 34 H 1.08997 * 109.47343 * 150.16843 * 1 2 3 35 35 H 1.08003 * 120.10933 * 0.02562 * 6 5 3 36 36 H 1.08004 * 119.67052 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.73677 * 180.02562 * 8 7 6 38 38 H 1.08005 * 120.11876 * 179.97438 * 9 8 7 39 39 H 1.09011 * 109.47321 * 149.68573 * 12 11 2 40 40 H 1.08996 * 109.47559 * 29.68897 * 12 11 2 41 41 H 1.09001 * 109.47706 * 29.99452 * 16 15 13 42 42 H 1.09005 * 109.47718 * 149.99223 * 16 15 13 43 43 H 0.97004 * 119.99996 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46609 * 150.00640 * 25 15 13 45 45 H 1.09000 * 109.47175 * 30.00435 * 25 15 13 46 46 H 1.07998 * 120.41943 * 359.97438 * 27 26 25 47 47 H 1.07996 * 120.79296 * 180.26097 * 28 27 26 48 48 H 1.08002 * 120.41883 * 179.71533 * 29 28 27 49 49 H 1.08006 * 119.62074 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9623 2.0325 0.0005 5 6 3.6215 0.7603 -0.0067 6 6 4.8098 1.4836 -0.0146 7 6 6.0158 0.8182 -0.0206 8 6 6.0589 -0.5695 -0.0194 9 6 4.9041 -1.2996 -0.0116 10 6 3.6705 -0.6455 -0.0055 11 6 2.2776 -1.0991 0.0033 12 6 1.8003 -2.5285 0.0081 13 6 1.6492 -3.0029 1.4305 14 8 1.9036 -2.2538 2.3498 15 7 1.2304 -4.2592 1.6810 16 6 0.9226 -5.1638 0.5706 17 6 -0.5304 -5.0236 0.1964 18 1 -1.1615 -4.3297 0.7320 19 6 -1.0541 -5.7804 -0.8303 20 7 -2.3221 -5.6577 -1.1570 21 14 0.0374 -6.9800 -1.7570 22 1 -0.0062 -8.3059 -1.0897 23 1 -0.4477 -7.1129 -3.1542 24 1 1.4338 -6.4750 -1.7638 25 6 1.0830 -4.7201 3.0638 26 6 2.3801 -5.3286 3.5314 27 6 3.2872 -4.5518 4.2273 28 6 4.4751 -5.1225 4.6575 29 6 4.7118 -6.4564 4.3611 30 6 3.7602 -7.1688 3.6568 31 7 2.6387 -6.5942 3.2675 32 1 -0.3633 0.0031 1.0276 33 1 -0.3633 0.8885 -0.5164 34 1 -0.3634 -0.8914 -0.5112 35 1 4.7868 2.5634 -0.0161 36 1 6.9373 1.3816 -0.0272 37 1 7.0127 -1.0759 -0.0237 38 1 4.9452 -2.3789 -0.0111 39 1 2.5266 -3.1558 -0.5089 40 1 0.8383 -2.5921 -0.5003 41 1 1.5449 -4.9104 -0.2878 42 1 1.1224 -6.1918 0.8732 43 1 -2.6906 -6.1904 -1.8791 44 1 0.2916 -5.4679 3.1150 45 1 0.8267 -3.8753 3.7030 46 1 3.0717 -3.5144 4.4364 47 1 5.2007 -4.5411 5.2069 48 1 5.6286 -6.9323 4.6766 49 1 3.9371 -8.2080 3.4216 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069629649.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:24 Heat of formation + Delta-G solvation = 57.635473 kcal Electronic energy + Delta-G solvation = -32551.887062 eV Core-core repulsion = 28444.166272 eV Total energy + Delta-G solvation = -4107.720791 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19190 -40.07384 -38.78486 -36.92763 -35.12753 -33.13667 -32.61430 -32.21472 -31.52400 -30.81372 -29.94950 -28.25192 -27.89473 -26.44917 -25.32583 -23.32816 -22.41708 -22.12315 -21.92790 -21.20185 -19.46073 -18.04834 -17.37585 -17.11137 -16.59872 -16.47511 -16.23902 -15.69416 -15.44652 -15.28492 -14.96533 -14.51669 -14.48363 -14.04389 -13.84919 -13.71517 -13.46253 -13.15199 -12.92928 -12.83731 -12.75778 -12.65329 -12.31407 -12.25201 -12.00105 -11.84135 -11.66935 -11.47038 -11.39107 -11.28404 -11.01672 -10.90618 -10.60381 -10.55214 -10.21429 -9.71913 -9.60945 -9.45189 -9.24511 -9.10428 -8.75840 -8.64567 -7.95811 -7.75076 -7.35452 -6.17345 -4.18076 1.25704 1.29852 1.47227 1.79353 2.84198 3.24060 3.24739 3.31668 3.34273 3.40514 3.76305 4.08455 4.29174 4.32959 4.56300 4.84628 4.93323 4.94802 5.00378 5.10936 5.14734 5.21914 5.22866 5.34799 5.41141 5.45288 5.50166 5.52455 5.66747 5.75348 5.76386 5.87733 5.95512 5.99770 6.04675 6.06578 6.14152 6.22458 6.30285 6.33202 6.36626 6.38765 6.55685 6.63788 6.77533 6.79972 6.89663 6.92970 7.07003 7.34244 7.36638 7.51022 7.71684 8.14973 8.26438 8.45870 8.86276 8.99059 9.43299 10.95051 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006758 B = 0.004276 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.376879 B = 6546.434514 C = 9091.922207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.092 3.908 3 N -0.594 5.594 4 H 0.411 0.589 5 C 0.096 3.904 6 C -0.133 4.133 7 C -0.107 4.107 8 C -0.152 4.152 9 C -0.067 4.067 10 C -0.086 4.086 11 C -0.139 4.139 12 C -0.064 4.064 13 C 0.524 3.476 14 O -0.559 6.559 15 N -0.585 5.585 16 C 0.208 3.792 17 C -0.538 4.538 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.869 3.131 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.264 1.264 25 C 0.168 3.832 26 C 0.120 3.880 27 C -0.149 4.149 28 C -0.082 4.082 29 C -0.181 4.181 30 C 0.093 3.907 31 N -0.469 5.469 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.265 0.735 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.138 0.862 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 8.630 4.875 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.015 4.015 3 N -0.198 5.198 4 H 0.247 0.753 5 C -0.011 4.011 6 C -0.154 4.154 7 C -0.126 4.126 8 C -0.172 4.172 9 C -0.085 4.085 10 C -0.091 4.091 11 C -0.146 4.146 12 C -0.104 4.104 13 C 0.312 3.688 14 O -0.438 6.438 15 N -0.315 5.315 16 C 0.087 3.913 17 C -0.576 4.576 18 H 0.097 0.903 19 C -0.125 4.125 20 N -0.530 5.530 21 Si 0.696 3.304 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.189 1.189 25 C 0.044 3.956 26 C -0.019 4.019 27 C -0.170 4.170 28 C -0.109 4.109 29 C -0.201 4.201 30 C -0.065 4.065 31 N -0.178 5.178 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.156 0.844 47 H 0.147 0.853 48 H 0.147 0.853 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.987 8.552 4.741 16.257 hybrid contribution 1.053 0.074 -0.122 1.063 sum 14.040 8.627 4.619 17.114 Atomic orbital electron populations 1.20518 0.87519 1.03794 1.03457 1.20054 0.93293 0.85201 1.02922 1.41599 1.03932 1.07896 1.66363 0.75298 1.18152 0.84542 0.94089 1.04279 1.19929 0.89823 0.98562 1.07086 1.20685 0.96410 0.94365 1.01161 1.20532 0.97711 0.93924 1.05004 1.20259 0.90685 0.99454 0.98139 1.19041 0.93146 0.91864 1.05029 1.19487 0.90337 0.93424 1.11372 1.19965 1.03997 0.91406 0.95022 1.20482 0.76014 0.81088 0.91199 1.90583 1.51764 1.54850 1.46646 1.47865 1.64789 1.12646 1.06216 1.19870 0.97156 0.89913 0.84411 1.21365 0.93261 1.24977 1.18000 0.90308 1.24826 0.94776 0.96376 0.96522 1.69889 1.12564 1.40749 1.29792 0.86951 0.81467 0.82408 0.79591 1.19823 1.21058 1.18891 1.20138 0.92100 0.99193 0.84206 1.21917 0.97308 0.89436 0.93198 1.22142 0.94456 1.01523 0.98845 1.21556 0.96756 0.94959 0.97587 1.22078 1.00953 0.95510 1.01586 1.22741 0.89370 1.00016 0.94329 1.67576 1.20325 1.11739 1.18169 0.90310 0.91774 0.88885 0.86732 0.86254 0.86500 0.86566 0.89096 0.86824 0.95052 0.94347 0.92456 0.88427 0.89137 0.84379 0.85296 0.85322 0.83118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.18 36.01 0.37 -0.90 16 2 C 0.09 1.41 7.08 -81.77 -0.58 0.83 16 3 N -0.59 -7.94 6.07 -6.95 -0.04 -7.98 16 4 H 0.41 4.03 8.96 -40.82 -0.37 3.67 16 5 C 0.10 1.43 7.28 -83.99 -0.61 0.82 16 6 C -0.13 -1.67 10.08 -39.44 -0.40 -2.07 16 7 C -0.11 -1.28 10.01 -39.54 -0.40 -1.67 16 8 C -0.15 -1.98 9.97 -39.94 -0.40 -2.38 16 9 C -0.07 -1.03 10.05 -39.65 -0.40 -1.43 16 10 C -0.09 -1.44 6.35 -105.14 -0.67 -2.11 16 11 C -0.14 -2.42 4.81 -102.71 -0.49 -2.91 16 12 C -0.06 -1.17 4.54 -29.04 -0.13 -1.31 16 13 C 0.52 10.52 7.66 -10.99 -0.08 10.44 16 14 O -0.56 -11.95 15.54 5.55 0.09 -11.87 16 15 N -0.58 -11.93 2.44 -176.43 -0.43 -12.36 16 16 C 0.21 4.64 4.03 -5.20 -0.02 4.62 16 17 C -0.54 -13.85 9.83 -34.44 -0.34 -14.19 16 18 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 19 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 20 N -0.89 -25.51 13.96 55.43 0.77 -24.73 16 21 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 25 C 0.17 3.13 5.71 -5.19 -0.03 3.10 16 26 C 0.12 2.09 6.36 -82.59 -0.53 1.56 16 27 C -0.15 -2.31 9.72 -39.44 -0.38 -2.69 16 28 C -0.08 -1.06 10.18 -39.27 -0.40 -1.46 16 29 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 30 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 31 N -0.47 -8.18 10.27 -9.47 -0.10 -8.27 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 35 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 39 H 0.09 1.61 7.40 -51.92 -0.38 1.22 16 40 H 0.11 2.14 6.90 -51.93 -0.36 1.78 16 41 H 0.03 0.69 5.50 -51.93 -0.29 0.41 16 42 H 0.04 0.89 7.50 -51.93 -0.39 0.50 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.10 1.86 8.07 -51.93 -0.42 1.44 16 45 H 0.09 1.62 7.32 -51.93 -0.38 1.23 16 46 H 0.14 2.16 7.99 -52.49 -0.42 1.74 16 47 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 48 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 49 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 412.87 15.07 6.22 6.22 Total: -1.00 -32.44 412.87 -11.10 -43.54 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.76 Total: 11.25 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -6.18 Total: -11.23 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.20 Total: -53.35 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.44 -11.10 -43.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629649.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.174 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds