Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.36836 * 125.03216 * 2 1 4 4 H 0.96996 * 125.06604 * 0.03798 * 3 2 1 5 5 C 1.37691 * 109.86825 * 180.29647 * 3 2 1 6 6 C 1.39118 * 133.50763 * 179.71305 * 5 3 2 7 7 C 1.37743 * 119.78277 * 180.02562 * 6 5 3 8 8 C 1.38836 * 120.66449 * 0.02562 * 7 6 5 9 9 C 1.36623 * 120.52598 * 359.97438 * 8 7 6 10 10 C 1.39627 * 119.76622 * 0.02562 * 9 8 7 11 11 C 1.34234 * 125.03316 * 179.82924 * 2 1 3 12 12 C 1.50693 * 126.50198 * 359.97438 * 11 2 1 13 13 C 1.50702 * 109.47405 * 269.68192 * 12 11 2 14 14 O 1.21284 * 119.99591 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00521 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99777 * 0.02562 * 15 13 12 17 17 C 1.50698 * 109.47176 * 269.99289 * 16 15 13 18 18 H 1.08006 * 120.00072 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99876 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99890 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46928 * 89.99909 * 21 19 17 23 23 H 1.48495 * 109.47091 * 209.99806 * 21 19 17 24 24 H 1.48495 * 109.47182 * 329.99856 * 21 19 17 25 25 C 1.46500 * 120.00149 * 180.02562 * 15 13 12 26 26 C 1.50706 * 109.46949 * 270.00461 * 25 15 13 27 27 C 1.38227 * 119.61528 * 94.73245 * 26 25 15 28 28 C 1.38631 * 119.15972 * 179.75508 * 27 26 25 29 29 C 1.38676 * 118.41875 * 0.50238 * 28 27 26 30 30 C 1.38177 * 119.16268 * 359.73245 * 29 28 27 31 31 N 1.31850 * 119.62066 * 274.99786 * 26 25 15 32 32 H 1.08998 * 109.47076 * 270.17063 * 1 2 3 33 33 H 1.09006 * 109.47075 * 30.16663 * 1 2 3 34 34 H 1.08997 * 109.47343 * 150.16843 * 1 2 3 35 35 H 1.08003 * 120.10933 * 0.02562 * 6 5 3 36 36 H 1.08004 * 119.67052 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.73677 * 180.02562 * 8 7 6 38 38 H 1.08005 * 120.11876 * 179.97438 * 9 8 7 39 39 H 1.09011 * 109.47321 * 149.68573 * 12 11 2 40 40 H 1.08996 * 109.47559 * 29.68897 * 12 11 2 41 41 H 1.09001 * 109.47706 * 29.99452 * 16 15 13 42 42 H 1.09005 * 109.47718 * 149.99223 * 16 15 13 43 43 H 0.97004 * 119.99996 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46609 * 150.00640 * 25 15 13 45 45 H 1.09000 * 109.47175 * 30.00435 * 25 15 13 46 46 H 1.07998 * 120.41943 * 359.97438 * 27 26 25 47 47 H 1.07996 * 120.79296 * 180.26097 * 28 27 26 48 48 H 1.08002 * 120.41883 * 179.71533 * 29 28 27 49 49 H 1.08006 * 119.62074 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.1205 0.0000 4 1 1.9623 2.0325 0.0005 5 6 3.6215 0.7603 -0.0067 6 6 4.8098 1.4836 -0.0146 7 6 6.0158 0.8182 -0.0206 8 6 6.0589 -0.5695 -0.0194 9 6 4.9041 -1.2996 -0.0116 10 6 3.6705 -0.6455 -0.0055 11 6 2.2776 -1.0991 0.0033 12 6 1.8003 -2.5285 0.0081 13 6 1.6492 -3.0029 1.4305 14 8 1.9036 -2.2538 2.3498 15 7 1.2304 -4.2592 1.6810 16 6 0.9226 -5.1638 0.5706 17 6 -0.5304 -5.0236 0.1964 18 1 -1.1615 -4.3297 0.7320 19 6 -1.0541 -5.7804 -0.8303 20 7 -2.3221 -5.6577 -1.1570 21 14 0.0374 -6.9800 -1.7570 22 1 -0.0062 -8.3059 -1.0897 23 1 -0.4477 -7.1129 -3.1542 24 1 1.4338 -6.4750 -1.7638 25 6 1.0830 -4.7201 3.0638 26 6 2.3801 -5.3286 3.5314 27 6 3.2872 -4.5518 4.2273 28 6 4.4751 -5.1225 4.6575 29 6 4.7118 -6.4564 4.3611 30 6 3.7602 -7.1688 3.6568 31 7 2.6387 -6.5942 3.2675 32 1 -0.3633 0.0031 1.0276 33 1 -0.3633 0.8885 -0.5164 34 1 -0.3634 -0.8914 -0.5112 35 1 4.7868 2.5634 -0.0161 36 1 6.9373 1.3816 -0.0272 37 1 7.0127 -1.0759 -0.0237 38 1 4.9452 -2.3789 -0.0111 39 1 2.5266 -3.1558 -0.5089 40 1 0.8383 -2.5921 -0.5003 41 1 1.5449 -4.9104 -0.2878 42 1 1.1224 -6.1918 0.8732 43 1 -2.6906 -6.1904 -1.8791 44 1 0.2916 -5.4679 3.1150 45 1 0.8267 -3.8753 3.7030 46 1 3.0717 -3.5144 4.4364 47 1 5.2007 -4.5411 5.2069 48 1 5.6286 -6.9323 4.6766 49 1 3.9371 -8.2080 3.4216 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069629649.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = 39.939866 kcal Electronic energy + Delta-G solvation = -32552.654401 eV Core-core repulsion = 28444.166272 eV Total energy + Delta-G solvation = -4108.488130 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.31514 -41.31817 -40.27558 -37.96479 -36.80301 -34.72811 -34.20593 -33.38484 -32.85949 -31.88763 -31.08515 -29.91666 -29.27585 -27.70340 -26.63452 -24.58796 -24.18712 -23.24927 -23.07023 -22.26418 -20.79912 -19.46626 -19.09973 -18.50911 -18.01656 -17.77024 -17.34489 -17.01173 -16.96510 -16.52164 -16.12484 -15.97321 -15.75125 -15.52469 -15.09860 -14.76818 -14.68769 -14.64239 -14.28821 -14.07567 -14.03630 -13.88162 -13.82603 -13.69685 -13.41731 -13.17170 -13.07817 -12.77690 -12.73863 -12.58828 -12.41292 -12.31438 -12.19480 -11.98753 -11.69497 -11.65918 -10.90051 -10.80104 -10.74645 -10.45011 -10.37104 -9.94283 -9.43624 -9.02348 -8.49417 -8.27495 -6.32827 0.13043 0.23288 0.38819 0.74888 1.39796 1.41633 1.50049 1.62755 1.79099 2.19161 2.34944 2.36241 2.98323 3.04775 3.06931 3.37339 3.74411 3.78542 3.88720 3.97587 4.03805 4.06098 4.19153 4.20577 4.26077 4.29323 4.38781 4.46692 4.53382 4.57949 4.59411 4.63854 4.71005 4.77279 4.78576 4.82752 4.87929 4.89510 4.96350 5.08981 5.10827 5.24068 5.25708 5.28316 5.47028 5.60285 5.65239 5.73545 5.81391 5.83191 5.91455 6.21556 6.27776 6.62492 6.72304 6.75136 7.10500 7.28192 7.38806 8.88201 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006758 B = 0.004276 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.376879 B = 6546.434514 C = 9091.922207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.093 3.907 3 N -0.582 5.582 4 H 0.428 0.572 5 C 0.081 3.919 6 C -0.131 4.131 7 C -0.104 4.104 8 C -0.148 4.148 9 C -0.096 4.096 10 C -0.118 4.118 11 C -0.177 4.177 12 C -0.054 4.054 13 C 0.522 3.478 14 O -0.573 6.573 15 N -0.589 5.589 16 C 0.224 3.776 17 C -0.533 4.533 18 H 0.039 0.961 19 C 0.028 3.972 20 N -0.937 5.937 21 Si 0.931 3.069 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.246 1.246 25 C 0.168 3.832 26 C 0.098 3.902 27 C -0.161 4.161 28 C -0.078 4.078 29 C -0.163 4.163 30 C 0.082 3.918 31 N -0.505 5.505 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.036 0.964 43 H 0.268 0.732 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.128 0.872 47 H 0.162 0.838 48 H 0.172 0.828 49 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.760 9.306 5.045 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.016 4.016 3 N -0.187 5.187 4 H 0.267 0.733 5 C -0.025 4.025 6 C -0.152 4.152 7 C -0.123 4.123 8 C -0.167 4.167 9 C -0.114 4.114 10 C -0.122 4.122 11 C -0.184 4.184 12 C -0.094 4.094 13 C 0.312 3.688 14 O -0.453 6.453 15 N -0.319 5.319 16 C 0.102 3.898 17 C -0.572 4.572 18 H 0.057 0.943 19 C -0.172 4.172 20 N -0.577 5.577 21 Si 0.754 3.246 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.169 1.169 25 C 0.045 3.955 26 C -0.040 4.040 27 C -0.181 4.181 28 C -0.104 4.104 29 C -0.182 4.182 30 C -0.075 4.075 31 N -0.215 5.215 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.146 0.854 47 H 0.180 0.820 48 H 0.190 0.810 49 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 17.030 9.263 4.931 20.004 hybrid contribution -0.139 -0.086 -0.067 0.177 sum 16.892 9.177 4.863 19.829 Atomic orbital electron populations 1.20502 0.86596 1.04548 1.03287 1.20239 0.93983 0.85549 1.01785 1.41517 1.03436 1.08227 1.65506 0.73274 1.18480 0.85597 0.93673 1.04796 1.20370 0.88997 1.00202 1.05611 1.21161 0.97696 0.94089 0.99375 1.20888 0.97789 0.94751 1.03245 1.20394 0.91394 0.99451 1.00206 1.19295 0.93138 0.93295 1.06493 1.19530 0.91669 0.93070 1.14124 1.19817 1.03221 0.92880 0.93524 1.20810 0.75449 0.80682 0.91883 1.90551 1.52454 1.55051 1.47294 1.47875 1.64815 1.12671 1.06550 1.19559 0.94863 0.90139 0.85288 1.21455 0.94593 1.23747 1.17394 0.94306 1.25601 0.95962 0.98164 0.97438 1.70024 1.14565 1.42250 1.30822 0.85956 0.80478 0.79975 0.78149 1.19370 1.20639 1.16911 1.20099 0.93314 0.98760 0.83365 1.21539 0.97085 0.90141 0.95209 1.22106 0.95573 1.01017 0.99424 1.21955 0.95956 0.95730 0.96791 1.22516 1.01599 0.94855 0.99262 1.23309 0.88719 1.01368 0.94140 1.67480 1.22487 1.11839 1.19672 0.90869 0.88463 0.90667 0.83575 0.82560 0.84063 0.87451 0.89023 0.88227 0.94232 0.94555 0.92298 0.90012 0.89372 0.85436 0.82025 0.81007 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 10.18 71.24 0.72 -1.80 16 2 C 0.09 2.91 7.08 40.86 0.29 3.20 16 3 N -0.58 -15.03 6.07 -175.91 -1.07 -16.10 16 4 H 0.43 7.66 8.96 -92.71 -0.83 6.83 16 5 C 0.08 2.33 7.28 39.03 0.28 2.61 16 6 C -0.13 -2.91 10.08 22.36 0.23 -2.68 16 7 C -0.10 -2.12 10.01 22.30 0.22 -1.90 16 8 C -0.15 -3.51 9.97 22.03 0.22 -3.29 16 9 C -0.10 -2.94 10.05 22.23 0.22 -2.72 16 10 C -0.12 -3.99 6.35 -20.20 -0.13 -4.12 16 11 C -0.18 -6.39 4.81 -18.63 -0.09 -6.48 16 12 C -0.05 -2.12 4.54 29.10 0.13 -1.99 16 13 C 0.52 22.23 7.66 87.66 0.67 22.90 16 14 O -0.57 -25.78 15.54 -3.04 -0.05 -25.82 16 15 N -0.59 -25.43 2.44 -830.50 -2.03 -27.45 16 16 C 0.22 10.36 4.03 85.63 0.35 10.70 16 17 C -0.53 -28.94 9.83 25.60 0.25 -28.69 16 18 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 19 C 0.03 1.52 5.47 84.66 0.46 1.99 16 20 N -0.94 -55.65 13.96 21.45 0.30 -55.35 16 21 Si 0.93 41.87 27.47 68.60 1.88 43.75 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 24 H -0.25 -10.22 6.54 99.48 0.65 -9.57 16 25 C 0.17 6.71 5.71 85.63 0.49 7.20 16 26 C 0.10 3.50 6.36 42.56 0.27 3.77 16 27 C -0.16 -4.97 9.72 22.36 0.22 -4.75 16 28 C -0.08 -1.82 10.18 22.47 0.23 -1.59 16 29 C -0.16 -3.34 10.11 22.36 0.23 -3.11 16 30 C 0.08 2.12 11.18 84.67 0.95 3.07 16 31 N -0.50 -17.59 10.27 -183.88 -1.89 -19.48 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.07 2.32 7.03 -2.39 -0.02 2.31 16 35 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.11 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.09 3.45 7.40 -2.38 -0.02 3.43 16 40 H 0.10 4.08 6.90 -2.39 -0.02 4.06 16 41 H 0.04 1.78 5.50 -2.39 -0.01 1.77 16 42 H 0.04 1.71 7.50 -2.38 -0.02 1.69 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.08 3.40 8.07 -2.39 -0.02 3.38 16 45 H 0.09 3.43 7.32 -2.39 -0.02 3.42 16 46 H 0.13 4.13 7.99 -2.91 -0.02 4.10 16 47 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 48 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 49 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.46 412.87 3.46 -70.99 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: 0.09 Total: 37.14 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 6.22 Total: -7.68 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.68 Total: -118.38 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -74.46 3.46 -70.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069629649.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.933 kcal (2) G-P(sol) polarization free energy of solvation -74.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds