Wall clock time and date at job start Tue Mar 31 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97661 * 2 1 4 4 C 1.38176 * 120.02583 * 179.97438 * 3 2 1 5 5 C 1.38482 * 119.97403 * 0.02562 * 4 3 2 6 6 F 1.35104 * 120.02604 * 179.97438 * 5 4 3 7 7 C 1.38446 * 119.95057 * 0.02562 * 5 4 3 8 8 S 1.76193 * 120.01235 * 180.02562 * 7 5 4 9 9 O 1.42101 * 106.40011 * 181.45577 * 8 7 5 10 10 O 1.42106 * 106.40543 * 48.53717 * 8 7 5 11 11 N 1.65597 * 107.22140 * 294.99554 * 8 7 5 12 12 C 1.46506 * 119.99791 * 89.99909 * 11 8 7 13 13 C 1.50695 * 109.46747 * 95.00454 * 12 11 8 14 14 H 1.07999 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99744 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47160 * 89.99643 * 17 15 13 19 19 H 1.48495 * 109.46933 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99916 * 17 15 13 21 21 C 1.46498 * 119.99910 * 270.28133 * 11 8 7 22 22 C 1.50703 * 109.46964 * 264.71709 * 21 11 8 23 23 C 1.38228 * 119.61316 * 94.73040 * 22 21 11 24 24 C 1.38628 * 119.15879 * 179.75662 * 23 22 21 25 25 C 1.38676 * 118.42271 * 0.50757 * 24 23 22 26 26 C 1.38189 * 119.16011 * 359.73137 * 25 24 23 27 27 N 1.31851 * 119.62181 * 275.00127 * 22 21 11 28 28 C 1.38215 * 119.96839 * 0.26857 * 7 5 4 29 29 H 1.09003 * 109.47054 * 89.99547 * 1 2 3 30 30 H 1.08987 * 109.47345 * 209.99823 * 1 2 3 31 31 H 1.09004 * 109.46976 * 329.99909 * 1 2 3 32 32 H 1.07994 * 119.98920 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.01474 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47194 * 215.00137 * 12 11 8 35 35 H 1.08998 * 109.47440 * 335.00346 * 12 11 8 36 36 H 0.97008 * 120.00034 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.47572 * 24.71903 * 21 11 8 38 38 H 1.09003 * 109.47280 * 144.72260 * 21 11 8 39 39 H 1.07997 * 120.42564 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.78982 * 180.26072 * 24 23 22 41 41 H 1.07994 * 120.42096 * 179.71082 * 25 24 23 42 42 H 1.07998 * 119.61512 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.98141 * 179.72658 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 -0.0001 0.0005 7 6 3.5797 -1.1987 -0.0005 8 16 4.4597 -2.7252 0.0001 9 8 3.4794 -3.7534 -0.0359 10 8 5.4409 -2.6224 1.0229 11 7 5.2852 -2.8158 -1.4325 12 6 6.6460 -2.2817 -1.5288 13 6 7.6388 -3.3923 -1.3008 14 1 7.2910 -4.3957 -1.1043 15 6 8.9913 -3.1277 -1.3441 16 7 9.8576 -4.0968 -1.1446 17 14 9.5930 -1.3924 -1.6847 18 1 9.7430 -0.6597 -0.4018 19 1 10.9049 -1.4506 -2.3779 20 1 8.6093 -0.6874 -2.5452 21 6 4.6525 -3.4245 -2.6052 22 6 5.0591 -4.8725 -2.7006 23 6 4.2449 -5.8479 -2.1561 24 6 4.6256 -7.1773 -2.2536 25 6 5.8216 -7.4766 -2.8886 26 6 6.5861 -6.4474 -3.4043 27 7 6.1900 -5.1939 -3.2975 28 6 2.1976 -1.1973 -0.0072 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6573 2.1327 -0.0004 33 1 4.1190 2.1345 0.0001 34 1 6.7996 -1.8550 -2.5200 35 1 6.7869 -1.5079 -0.7742 36 1 10.8092 -3.9105 -1.1747 37 1 3.5689 -3.3570 -2.5096 38 1 4.9714 -2.8977 -3.5047 39 1 3.3222 -5.5781 -1.6641 40 1 4.0074 -7.9611 -1.8413 41 1 6.1516 -8.5009 -2.9786 42 1 7.5189 -6.6720 -3.8999 43 1 1.6570 -2.1323 -0.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069630663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:31 Heat of formation + Delta-G solvation = -37.675628 kcal Electronic energy + Delta-G solvation = -31646.593775 eV Core-core repulsion = 27313.171874 eV Total energy + Delta-G solvation = -4333.421901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.104 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.10450 -39.56707 -39.34643 -36.75468 -35.89141 -35.31847 -32.74791 -32.43351 -31.81175 -31.59178 -30.97626 -27.99657 -26.91929 -25.48746 -23.73283 -22.91289 -22.13160 -21.99590 -21.38868 -18.56378 -17.99199 -17.28807 -17.07605 -16.62346 -16.34365 -16.24449 -15.72601 -15.46037 -15.30187 -14.94498 -14.70372 -14.31045 -14.26038 -13.95256 -13.73890 -13.60952 -13.24486 -12.91969 -12.67499 -12.50249 -12.48309 -12.32976 -12.19652 -12.03734 -11.74875 -11.70310 -11.66218 -11.55294 -11.23902 -11.10205 -10.64618 -10.56731 -10.35611 -10.17166 -9.65459 -9.47152 -9.19251 -8.80013 -8.70362 -8.48382 -8.38949 -8.12715 -5.90023 -3.84534 0.47022 0.81148 0.92685 1.68523 1.92132 3.07227 3.38342 3.43499 3.45684 3.53020 3.97261 4.10381 4.35758 4.47573 4.48769 4.54227 4.77447 4.86713 4.87878 4.97970 5.12894 5.20128 5.30244 5.33805 5.41055 5.46629 5.49221 5.57479 5.63353 5.66607 5.73343 5.77769 5.88030 5.93122 6.10277 6.11640 6.23520 6.38233 6.57403 6.67883 6.70714 6.84417 7.11929 7.27663 7.33056 7.73481 8.65709 8.74891 9.15937 9.69877 11.23987 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.005077 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.653081 B = 5513.492435 C = 7714.567613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.171 4.171 5 C 0.194 3.806 6 F -0.112 7.112 7 C -0.712 4.712 8 S 2.682 3.318 9 O -0.963 6.963 10 O -0.927 6.927 11 N -0.967 5.967 12 C 0.218 3.782 13 C -0.502 4.502 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.899 5.899 17 Si 0.863 3.137 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.183 3.817 22 C 0.114 3.886 23 C -0.163 4.163 24 C -0.089 4.089 25 C -0.179 4.179 26 C 0.106 3.894 27 N -0.428 5.428 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.150 0.850 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.318 6.082 -2.274 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.191 4.191 5 C 0.173 3.827 6 F -0.090 7.090 7 C -0.795 4.795 8 S 2.769 3.231 9 O -0.953 6.953 10 O -0.917 6.917 11 N -0.805 5.805 12 C 0.096 3.904 13 C -0.541 4.541 14 H 0.096 0.904 15 C -0.126 4.126 16 N -0.538 5.538 17 Si 0.690 3.310 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.190 1.190 21 C 0.057 3.943 22 C -0.026 4.026 23 C -0.183 4.183 24 C -0.115 4.115 25 C -0.199 4.199 26 C -0.052 4.052 27 N -0.136 5.136 28 C -0.018 4.018 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.158 0.842 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.167 0.833 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.556 6.189 -1.951 19.658 hybrid contribution 0.277 0.826 0.080 0.875 sum -18.279 7.015 -1.871 19.668 Atomic orbital electron populations 1.20787 0.90067 1.03274 1.02778 1.20084 0.96873 0.92933 1.02561 1.21145 0.93067 0.98218 0.93871 1.21247 0.95184 0.97190 1.05463 1.17164 0.77242 0.93516 0.94786 1.91657 1.27738 1.97094 1.92500 1.31609 1.07241 1.20975 1.19656 1.02531 0.73072 0.73582 0.73964 1.93490 1.62156 1.52921 1.86782 1.93652 1.57796 1.85922 1.54299 1.57267 1.25623 1.71654 1.25996 1.19770 0.77059 0.95594 0.98018 1.21167 0.89679 0.95802 1.47446 0.90427 1.24732 0.96618 0.96275 0.94984 1.69883 1.01627 1.31638 1.50657 0.87064 0.78675 0.86297 0.78976 1.20055 1.21219 1.19004 1.19931 0.95692 0.88529 0.90193 1.21494 0.90416 0.96205 0.94468 1.22138 1.02219 0.93476 1.00487 1.21433 0.96322 0.96488 0.97269 1.22087 0.96316 1.00688 1.00823 1.22698 0.98552 0.87744 0.96231 1.67546 1.12181 1.20172 1.13726 1.20770 0.90822 0.99311 0.90863 0.90766 0.90982 0.91265 0.84465 0.83847 0.94571 0.94146 0.92943 0.89748 0.88798 0.84213 0.85632 0.85636 0.83291 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 2 C -0.12 -1.24 5.88 -104.62 -0.62 -1.85 16 3 C -0.04 -0.43 9.70 -39.59 -0.38 -0.81 16 4 C -0.17 -2.03 10.03 -39.51 -0.40 -2.43 16 5 C 0.19 3.06 7.21 -39.42 -0.28 2.78 16 6 F -0.11 -2.09 13.74 2.25 0.03 -2.06 16 7 C -0.71 -11.30 5.91 -39.51 -0.23 -11.54 16 8 S 2.68 53.04 5.24 -107.50 -0.56 52.48 16 9 O -0.96 -18.08 14.51 -57.17 -0.83 -18.91 16 10 O -0.93 -22.52 16.40 -57.17 -0.94 -23.46 16 11 N -0.97 -19.89 2.78 -116.95 -0.33 -20.21 16 12 C 0.22 5.28 4.07 -5.19 -0.02 5.26 16 13 C -0.50 -14.43 8.82 -34.44 -0.30 -14.74 16 14 H 0.08 2.46 7.21 -52.49 -0.38 2.08 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 17 Si 0.86 21.96 27.47 -169.99 -4.67 17.29 16 18 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.18 3.20 5.68 -5.19 -0.03 3.17 16 22 C 0.11 2.21 5.66 -82.59 -0.47 1.74 16 23 C -0.16 -2.82 9.31 -39.44 -0.37 -3.19 16 24 C -0.09 -1.40 10.18 -39.28 -0.40 -1.80 16 25 C -0.18 -2.87 10.11 -39.44 -0.40 -3.27 16 26 C 0.11 1.99 11.18 -17.55 -0.20 1.79 16 27 N -0.43 -9.05 9.01 -9.47 -0.09 -9.14 16 28 C 0.00 0.02 9.20 -39.59 -0.36 -0.35 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.09 -51.94 -0.42 0.02 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.04 0.85 7.06 -51.93 -0.37 0.48 16 35 H 0.04 1.00 4.50 -51.93 -0.23 0.77 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.08 1.14 7.51 -51.93 -0.39 0.75 16 38 H 0.09 1.52 8.00 -51.93 -0.42 1.10 16 39 H 0.14 2.22 7.04 -52.49 -0.37 1.85 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.15 2.57 8.06 -52.49 -0.42 2.14 16 43 H 0.15 1.65 7.33 -52.49 -0.38 1.27 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -36.88 373.84 -10.25 -47.13 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.08 Total: 2.05 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -4.20 Total: -23.48 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.36 Total: -56.67 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.77 Total: -42.37 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.03 Total: -2.06 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.56 Total: 52.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.88 -10.25 -47.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069630663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.454 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds