Wall clock time and date at job start Tue Mar 31 2020 06:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.97661 * 2 1 4 4 C 1.38176 * 120.02583 * 179.97438 * 3 2 1 5 5 C 1.38482 * 119.97403 * 0.02562 * 4 3 2 6 6 F 1.35104 * 120.02604 * 179.97438 * 5 4 3 7 7 C 1.38446 * 119.95057 * 0.02562 * 5 4 3 8 8 S 1.76193 * 120.01235 * 180.02562 * 7 5 4 9 9 O 1.42101 * 106.40011 * 181.45577 * 8 7 5 10 10 O 1.42106 * 106.40543 * 48.53717 * 8 7 5 11 11 N 1.65597 * 107.22140 * 294.99554 * 8 7 5 12 12 C 1.46506 * 119.99791 * 89.99909 * 11 8 7 13 13 C 1.50695 * 109.46747 * 95.00454 * 12 11 8 14 14 H 1.07999 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99744 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47160 * 89.99643 * 17 15 13 19 19 H 1.48495 * 109.46933 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99916 * 17 15 13 21 21 C 1.46498 * 119.99910 * 270.28133 * 11 8 7 22 22 C 1.50703 * 109.46964 * 264.71709 * 21 11 8 23 23 C 1.38228 * 119.61316 * 94.73040 * 22 21 11 24 24 C 1.38628 * 119.15879 * 179.75662 * 23 22 21 25 25 C 1.38676 * 118.42271 * 0.50757 * 24 23 22 26 26 C 1.38189 * 119.16011 * 359.73137 * 25 24 23 27 27 N 1.31851 * 119.62181 * 275.00127 * 22 21 11 28 28 C 1.38215 * 119.96839 * 0.26857 * 7 5 4 29 29 H 1.09003 * 109.47054 * 89.99547 * 1 2 3 30 30 H 1.08987 * 109.47345 * 209.99823 * 1 2 3 31 31 H 1.09004 * 109.46976 * 329.99909 * 1 2 3 32 32 H 1.07994 * 119.98920 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.01474 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47194 * 215.00137 * 12 11 8 35 35 H 1.08998 * 109.47440 * 335.00346 * 12 11 8 36 36 H 0.97008 * 120.00034 * 180.02562 * 16 15 13 37 37 H 1.08990 * 109.47572 * 24.71903 * 21 11 8 38 38 H 1.09003 * 109.47280 * 144.72260 * 21 11 8 39 39 H 1.07997 * 120.42564 * 359.97438 * 23 22 21 40 40 H 1.07999 * 120.78982 * 180.26072 * 24 23 22 41 41 H 1.07994 * 120.42096 * 179.71082 * 25 24 23 42 42 H 1.07998 * 119.61512 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.98141 * 179.72658 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1977 0.0000 4 6 3.5796 1.1989 0.0005 5 6 4.2725 -0.0001 0.0005 6 9 5.6235 -0.0001 0.0005 7 6 3.5797 -1.1987 -0.0005 8 16 4.4597 -2.7252 0.0001 9 8 3.4794 -3.7534 -0.0359 10 8 5.4409 -2.6224 1.0229 11 7 5.2852 -2.8158 -1.4325 12 6 6.6460 -2.2817 -1.5288 13 6 7.6388 -3.3923 -1.3008 14 1 7.2910 -4.3957 -1.1043 15 6 8.9913 -3.1277 -1.3441 16 7 9.8576 -4.0968 -1.1446 17 14 9.5930 -1.3924 -1.6847 18 1 9.7430 -0.6597 -0.4018 19 1 10.9049 -1.4506 -2.3779 20 1 8.6093 -0.6874 -2.5452 21 6 4.6525 -3.4245 -2.6052 22 6 5.0591 -4.8725 -2.7006 23 6 4.2449 -5.8479 -2.1561 24 6 4.6256 -7.1773 -2.2536 25 6 5.8216 -7.4766 -2.8886 26 6 6.5861 -6.4474 -3.4043 27 7 6.1900 -5.1939 -3.2975 28 6 2.1976 -1.1973 -0.0072 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5139 32 1 1.6573 2.1327 -0.0004 33 1 4.1190 2.1345 0.0001 34 1 6.7996 -1.8550 -2.5200 35 1 6.7869 -1.5079 -0.7742 36 1 10.8092 -3.9105 -1.1747 37 1 3.5689 -3.3570 -2.5096 38 1 4.9714 -2.8977 -3.5047 39 1 3.3222 -5.5781 -1.6641 40 1 4.0074 -7.9611 -1.8413 41 1 6.1516 -8.5009 -2.9786 42 1 7.5189 -6.6720 -3.8999 43 1 1.6570 -2.1323 -0.0125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069630663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:30 Heat of formation + Delta-G solvation = -63.576747 kcal Electronic energy + Delta-G solvation = -31647.716932 eV Core-core repulsion = 27313.171874 eV Total energy + Delta-G solvation = -4334.545057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.104 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.32525 -40.95330 -40.25057 -38.34672 -37.51208 -36.94484 -34.55957 -33.55126 -33.19691 -32.57665 -32.49135 -29.86271 -27.64990 -27.05772 -24.72949 -24.33109 -23.92684 -23.06604 -22.81580 -19.96775 -19.26378 -19.10903 -18.55704 -17.91004 -17.80293 -17.59992 -17.01270 -16.90567 -16.78942 -16.33529 -16.14670 -15.55283 -15.38453 -15.22618 -14.82410 -14.78672 -14.57624 -14.54831 -14.12707 -14.08553 -13.80588 -13.48382 -13.38370 -13.31739 -13.20091 -13.04823 -12.97751 -12.90791 -12.60391 -12.56332 -12.35416 -12.20084 -12.06500 -11.78119 -11.58480 -10.69707 -10.61105 -10.59673 -10.25654 -9.90041 -9.76063 -9.67652 -8.17661 -6.15754 -0.78776 -0.41705 0.01270 0.30375 0.57367 1.33511 1.37272 1.44043 1.89949 2.30273 2.39361 2.65628 2.95925 3.05053 3.18020 3.22552 3.54342 3.64827 3.77092 3.81014 4.06352 4.07142 4.11276 4.12583 4.34364 4.37410 4.40905 4.56044 4.67487 4.69845 4.79518 4.83806 4.86261 4.90253 4.90652 4.99170 5.01742 5.22111 5.27304 5.34921 5.36616 5.39023 5.55088 5.64759 5.73083 5.95853 6.40343 6.82538 7.34052 7.41457 8.99846 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.009532 B = 0.005077 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.653081 B = 5513.492435 C = 7714.567613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 C -0.028 4.028 4 C -0.166 4.166 5 C 0.152 3.848 6 F -0.140 7.140 7 C -0.718 4.718 8 S 2.685 3.315 9 O -0.964 6.964 10 O -0.988 6.988 11 N -0.974 5.974 12 C 0.228 3.772 13 C -0.495 4.495 14 H 0.035 0.965 15 C 0.012 3.988 16 N -0.947 5.947 17 Si 0.923 3.077 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.238 1.238 21 C 0.175 3.825 22 C 0.089 3.911 23 C -0.170 4.170 24 C -0.089 4.089 25 C -0.173 4.173 26 C 0.075 3.925 27 N -0.471 5.471 28 C -0.009 4.009 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.261 0.739 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.150 0.850 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.329 8.551 -2.698 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.111 4.111 3 C -0.046 4.046 4 C -0.185 4.185 5 C 0.131 3.869 6 F -0.118 7.118 7 C -0.807 4.807 8 S 2.778 3.222 9 O -0.954 6.954 10 O -0.979 6.979 11 N -0.811 5.811 12 C 0.104 3.896 13 C -0.535 4.535 14 H 0.053 0.947 15 C -0.185 4.185 16 N -0.589 5.589 17 Si 0.747 3.253 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.161 1.161 21 C 0.050 3.950 22 C -0.051 4.051 23 C -0.191 4.191 24 C -0.114 4.114 25 C -0.192 4.192 26 C -0.082 4.082 27 N -0.180 5.180 28 C -0.028 4.028 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.203 0.797 33 H 0.185 0.815 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.172 0.828 40 H 0.183 0.817 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.569 8.596 -2.397 24.269 hybrid contribution 1.277 0.032 0.255 1.302 sum -21.292 8.628 -2.142 23.074 Atomic orbital electron populations 1.20926 0.87011 1.04790 1.04250 1.20562 0.98897 0.91932 0.99749 1.21749 0.92072 1.00024 0.90737 1.21623 0.96380 0.96466 1.04000 1.17652 0.76401 0.95089 0.97743 1.91572 1.29862 1.97254 1.93154 1.30848 1.08263 1.18312 1.23282 1.01883 0.72723 0.74707 0.72901 1.93462 1.61325 1.54084 1.86536 1.93576 1.60421 1.87368 1.56499 1.57125 1.24607 1.72320 1.27050 1.19423 0.78165 0.93900 0.98108 1.21377 0.90846 0.95310 1.45965 0.94664 1.25617 0.96948 1.00694 0.95240 1.70046 1.01909 1.34104 1.52874 0.86081 0.78822 0.81160 0.79268 1.20043 1.20572 1.16094 1.20279 0.97648 0.87672 0.89437 1.21839 0.90525 0.97538 0.95198 1.22400 1.02478 0.94074 1.00121 1.21932 0.96404 0.96887 0.96227 1.22420 0.95886 1.01598 0.99341 1.22955 0.99449 0.88249 0.97561 1.67452 1.13527 1.21604 1.15393 1.21067 0.89406 1.01342 0.91018 0.89118 0.90485 0.88898 0.79681 0.81484 0.93623 0.94357 0.93011 0.85903 0.88074 0.82826 0.81750 0.82210 0.83273 0.81956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 71.24 0.71 -0.14 16 2 C -0.11 -1.70 5.88 -19.86 -0.12 -1.82 16 3 C -0.03 -0.39 9.70 22.26 0.22 -0.17 16 4 C -0.17 -3.39 10.03 22.31 0.22 -3.17 16 5 C 0.15 4.69 7.21 22.38 0.16 4.85 16 6 F -0.14 -5.37 13.74 44.97 0.62 -4.75 16 7 C -0.72 -22.33 5.91 22.31 0.13 -22.20 16 8 S 2.68 109.07 5.24 -56.49 -0.30 108.77 16 9 O -0.96 -36.35 14.51 -128.00 -1.86 -38.21 16 10 O -0.99 -50.88 16.40 -128.00 -2.10 -52.98 16 11 N -0.97 -41.16 2.78 -523.92 -1.46 -42.62 16 12 C 0.23 11.41 4.07 85.63 0.35 11.76 16 13 C -0.50 -29.97 8.82 25.60 0.23 -29.74 16 14 H 0.04 2.38 7.21 -2.91 -0.02 2.36 16 15 C 0.01 0.71 5.47 84.66 0.46 1.17 16 16 N -0.95 -62.25 13.96 21.45 0.30 -61.95 16 17 Si 0.92 46.45 27.47 68.60 1.88 48.34 16 18 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 21 C 0.18 6.17 5.68 85.63 0.49 6.66 16 22 C 0.09 3.52 5.66 42.55 0.24 3.76 16 23 C -0.17 -5.87 9.31 22.36 0.21 -5.67 16 24 C -0.09 -2.69 10.18 22.47 0.23 -2.46 16 25 C -0.17 -5.49 10.11 22.36 0.23 -5.27 16 26 C 0.08 2.97 11.18 84.67 0.95 3.91 16 27 N -0.47 -20.90 9.01 -183.88 -1.66 -22.56 16 28 C -0.01 -0.21 9.20 22.26 0.20 0.00 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.09 0.34 8.09 -2.38 -0.02 0.32 16 32 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.05 2.17 7.06 -2.39 -0.02 2.16 16 35 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 36 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 37 H 0.12 3.22 7.51 -2.39 -0.02 3.21 16 38 H 0.10 3.32 8.00 -2.39 -0.02 3.30 16 39 H 0.15 4.73 7.04 -2.91 -0.02 4.71 16 40 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 41 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 42 H 0.15 5.54 8.06 -2.91 -0.02 5.52 16 43 H 0.16 3.17 7.33 -2.91 -0.02 3.15 16 Total: -1.00 -88.20 373.84 1.33 -86.86 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.99 Total: 17.61 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.91 Total: -38.52 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -2.82 Total: -127.13 kcal Atomic # 8 Polarization: -87.23 SS G_CDS: -3.96 Total: -91.19 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.62 Total: -4.75 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.88 Total: 48.34 kcal Atomic # 16 Polarization: 109.07 SS G_CDS: -0.30 Total: 108.77 kcal Total: -88.20 1.33 -86.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069630663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.287 kcal (2) G-P(sol) polarization free energy of solvation -88.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds