Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36866 * 125.02164 * 2 1 4 4 H 0.96997 * 125.00344 * 0.04617 * 3 2 1 5 5 C 1.37399 * 109.98148 * 180.02562 * 3 2 1 6 6 C 1.39366 * 133.24603 * 180.02562 * 5 3 2 7 7 C 1.36325 * 120.23243 * 179.72014 * 6 5 3 8 8 C 1.40201 * 120.66957 * 0.55531 * 7 6 5 9 9 C 1.47650 * 119.97219 * 179.71532 * 8 7 6 10 10 O 1.21588 * 120.00177 * 49.80360 * 9 8 7 11 11 N 1.34782 * 120.00352 * 229.80292 * 9 8 7 12 12 C 1.46501 * 119.99478 * 355.13454 * 11 9 8 13 13 C 1.50698 * 109.47075 * 264.11629 * 12 11 9 14 14 H 1.07994 * 120.00200 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00009 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99658 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00007 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47276 * 89.99784 * 17 15 13 19 19 H 1.48497 * 109.46903 * 209.99542 * 17 15 13 20 20 H 1.48497 * 109.47242 * 329.99579 * 17 15 13 21 21 C 1.46498 * 120.00112 * 175.13135 * 11 9 8 22 22 C 1.50702 * 109.46697 * 90.00512 * 21 11 9 23 23 C 1.38227 * 119.62059 * 94.97519 * 22 21 11 24 24 C 1.38626 * 119.15991 * 180.02562 * 23 22 21 25 25 C 1.38669 * 118.42448 * 0.02562 * 24 23 22 26 26 C 1.38185 * 119.16122 * 359.97438 * 25 24 23 27 27 N 1.31854 * 119.61785 * 274.99577 * 22 21 11 28 28 C 1.39150 * 120.05223 * 359.43955 * 8 7 6 29 29 C 1.39259 * 119.39917 * 0.27722 * 28 8 7 30 30 C 1.34191 * 125.01930 * 180.02562 * 2 1 3 31 31 C 1.50696 * 126.54464 * 359.95457 * 30 2 1 32 32 H 1.09000 * 109.47245 * 269.97333 * 1 2 3 33 33 H 1.09000 * 109.47011 * 29.97642 * 1 2 3 34 34 H 1.08999 * 109.46818 * 149.97332 * 1 2 3 35 35 H 1.07997 * 119.88187 * 0.02562 * 6 5 3 36 36 H 1.07999 * 119.65833 * 180.29577 * 7 6 5 37 37 H 1.09000 * 109.47295 * 24.11454 * 12 11 9 38 38 H 1.08999 * 109.46675 * 144.11370 * 12 11 9 39 39 H 0.97002 * 119.99735 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47604 * 330.00581 * 21 11 9 41 41 H 1.08993 * 109.46848 * 209.99687 * 21 11 9 42 42 H 1.08004 * 120.41828 * 359.97438 * 23 22 21 43 43 H 1.08007 * 120.78531 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.41823 * 180.02562 * 25 24 23 45 45 H 1.07994 * 119.61721 * 180.27836 * 26 25 24 46 46 H 1.08007 * 120.30150 * 180.25420 * 28 8 7 47 47 H 1.08998 * 109.47498 * 270.03335 * 31 30 2 48 48 H 1.09004 * 109.47012 * 30.02923 * 31 30 2 49 49 H 1.08997 * 109.47288 * 150.02397 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2924 1.1208 0.0000 4 1 1.9611 2.0325 0.0006 5 6 3.6194 0.7643 -0.0006 6 6 4.8049 1.4969 -0.0004 7 6 6.0080 0.8558 0.0046 8 6 6.0720 -0.5447 -0.0020 9 6 7.3834 -1.2232 -0.0028 10 8 8.2341 -0.9029 0.8047 11 7 7.6376 -2.1976 -0.8986 12 6 6.5788 -2.6575 -1.8008 13 6 5.9222 -3.8836 -1.2209 14 1 6.2600 -4.2810 -0.2752 15 6 4.8908 -4.4989 -1.8982 16 7 4.4798 -4.0154 -3.0501 17 14 4.0773 -6.0193 -1.1798 18 1 2.9379 -5.6112 -0.3192 19 1 3.5812 -6.8825 -2.2815 20 1 5.0661 -6.7727 -0.3675 21 6 8.9725 -2.7968 -0.9702 22 6 9.0420 -3.9809 -0.0405 23 6 8.8034 -5.2505 -0.5322 24 6 8.8694 -6.3328 0.3316 25 6 9.1736 -6.0966 1.6637 26 6 9.3999 -4.7994 2.0829 27 7 9.3293 -3.7937 1.2327 28 6 4.9007 -1.2959 -0.0021 29 6 3.6703 -0.6436 -0.0014 30 6 2.2770 -1.0990 -0.0005 31 6 1.8005 -2.5286 -0.0002 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3633 -0.8897 -0.5142 35 1 4.7704 2.5763 0.0008 36 1 6.9210 1.4327 0.0096 37 1 5.8354 -1.8693 -1.9201 38 1 7.0095 -2.9008 -2.7721 39 1 3.7540 -4.4480 -3.5264 40 1 9.7184 -2.0589 -0.6751 41 1 9.1694 -3.1244 -1.9909 42 1 8.5678 -5.3974 -1.5759 43 1 8.6881 -7.3362 -0.0246 44 1 9.2338 -6.9161 2.3645 45 1 9.6419 -4.6075 3.1177 46 1 4.9453 -2.3750 -0.0031 47 1 1.6857 -2.8731 1.0275 48 1 0.8412 -2.5919 -0.5139 49 1 2.5297 -3.1548 -0.5141 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069660179.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = 58.808931 kcal Electronic energy + Delta-G solvation = -33232.894654 eV Core-core repulsion = 29125.224748 eV Total energy + Delta-G solvation = -4107.669906 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98817 -39.80727 -38.77704 -36.20697 -35.03457 -33.01742 -32.62776 -31.91179 -31.29317 -30.75782 -29.61674 -27.71286 -27.52244 -25.90255 -25.46100 -23.13538 -22.94853 -22.39707 -21.55863 -20.86969 -19.13098 -18.27626 -17.29355 -16.73765 -16.45773 -16.32683 -15.61299 -15.49084 -15.08404 -15.03316 -14.67341 -14.46781 -14.20267 -13.67779 -13.49100 -13.21034 -13.04485 -12.83953 -12.79866 -12.68669 -12.44699 -12.34566 -12.31611 -12.19760 -12.07668 -11.73637 -11.59478 -11.37155 -11.26176 -11.19144 -10.95046 -10.81525 -10.58820 -10.26770 -10.08759 -9.75888 -9.35133 -9.02771 -8.95145 -8.87456 -8.58812 -8.39756 -7.71878 -7.59353 -7.09158 -6.17660 -4.23093 1.57602 1.65334 1.82809 1.88302 3.01689 3.18744 3.27258 3.31027 3.37436 3.61716 3.95120 4.29976 4.43732 4.59177 4.84109 4.92763 5.10881 5.16563 5.24542 5.27424 5.31845 5.39998 5.48620 5.50954 5.52927 5.59625 5.67853 5.78408 5.82570 5.93884 6.02454 6.05799 6.15342 6.22434 6.25577 6.28712 6.31270 6.35301 6.61804 6.68098 6.68658 6.72862 6.80560 6.89764 7.08112 7.20528 7.24883 7.27451 7.31938 7.58864 7.65172 7.76876 7.85887 8.08297 8.40260 8.60190 8.83005 9.14242 9.42452 10.87921 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.004242 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.075992 B = 6599.044221 C = 8341.376428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.048 3.952 3 N -0.595 5.595 4 H 0.408 0.592 5 C 0.112 3.888 6 C -0.156 4.156 7 C -0.050 4.050 8 C -0.159 4.159 9 C 0.564 3.436 10 O -0.548 6.548 11 N -0.589 5.589 12 C 0.230 3.770 13 C -0.532 4.532 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.879 5.879 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.174 3.826 22 C 0.125 3.875 23 C -0.130 4.130 24 C -0.086 4.086 25 C -0.182 4.182 26 C 0.086 3.914 27 N -0.458 5.458 28 C -0.005 4.005 29 C -0.112 4.112 30 C -0.140 4.140 31 C -0.083 4.083 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.137 0.863 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.146 0.854 46 H 0.165 0.835 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 3.540 3.502 5.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 N -0.199 5.199 4 H 0.244 0.756 5 C 0.005 3.995 6 C -0.177 4.177 7 C -0.070 4.070 8 C -0.163 4.163 9 C 0.352 3.648 10 O -0.427 6.427 11 N -0.320 5.320 12 C 0.110 3.890 13 C -0.571 4.571 14 H 0.079 0.921 15 C -0.130 4.130 16 N -0.517 5.517 17 Si 0.705 3.295 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.049 3.951 22 C -0.014 4.014 23 C -0.151 4.151 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.072 4.072 27 N -0.168 5.168 28 C -0.023 4.023 29 C -0.117 4.117 30 C -0.147 4.147 31 C -0.140 4.140 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.163 0.837 46 H 0.182 0.818 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.299 4.624 4.023 6.546 hybrid contribution -1.093 -1.476 -0.040 1.837 sum -3.392 3.148 3.983 6.106 Atomic orbital electron populations 1.20371 0.88281 1.03213 1.02473 1.19902 0.92876 0.85584 1.07402 1.41478 1.04059 1.07643 1.66684 0.75593 1.18339 0.84279 0.94354 1.02571 1.19429 0.89481 0.98384 1.10402 1.20381 0.96763 0.92899 0.96964 1.19527 0.93307 0.93553 1.09891 1.18243 0.86686 0.79435 0.80396 1.90729 1.47736 1.66161 1.38111 1.48098 1.11688 1.35306 1.36880 1.19661 0.85245 0.95677 0.88373 1.21417 1.17353 1.11466 1.06818 0.92072 1.24842 0.96563 0.96929 0.94670 1.69924 1.27666 1.40017 1.14057 0.86819 0.80245 0.83433 0.79021 1.19913 1.21159 1.19799 1.20072 0.86333 0.92064 0.96594 1.21649 0.93975 0.94429 0.91368 1.22001 0.98374 0.92935 1.01749 1.21481 0.96851 0.99337 0.93521 1.22018 1.03070 0.98472 0.96688 1.22632 0.96943 0.88456 0.99137 1.67581 1.11319 1.34806 1.03045 1.21698 0.88692 1.02706 0.89215 1.19026 0.93272 0.91443 1.07925 1.20077 0.90688 0.94596 1.09346 1.20207 1.01029 0.91583 1.01229 0.91080 0.91910 0.89939 0.86670 0.85852 0.93165 0.94980 0.92580 0.89523 0.89445 0.84501 0.85598 0.85781 0.83691 0.81826 0.92372 0.92464 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.18 36.01 0.37 -0.51 16 2 C 0.05 0.70 7.08 -81.77 -0.58 0.12 16 3 N -0.59 -8.37 6.05 -6.91 -0.04 -8.41 16 4 H 0.41 4.22 8.96 -40.82 -0.37 3.85 16 5 C 0.11 1.95 7.27 -83.95 -0.61 1.34 16 6 C -0.16 -2.55 10.00 -39.85 -0.40 -2.94 16 7 C -0.05 -0.92 9.64 -39.53 -0.38 -1.30 16 8 C -0.16 -3.36 4.89 -104.98 -0.51 -3.87 16 9 C 0.56 12.70 7.20 -12.42 -0.09 12.61 16 10 O -0.55 -13.35 16.66 5.29 0.09 -13.27 16 11 N -0.59 -12.68 2.45 -177.62 -0.44 -13.12 16 12 C 0.23 5.31 4.71 -5.19 -0.02 5.29 16 13 C -0.53 -12.88 6.06 -34.44 -0.21 -13.09 16 14 H 0.06 1.57 6.90 -52.49 -0.36 1.21 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.88 -22.75 13.29 55.43 0.74 -22.01 16 17 Si 0.88 19.51 29.54 -169.99 -5.02 14.49 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 C 0.17 3.33 5.71 -5.19 -0.03 3.30 16 22 C 0.13 2.43 5.79 -82.59 -0.48 1.95 16 23 C -0.13 -2.32 8.56 -39.44 -0.34 -2.66 16 24 C -0.09 -1.37 10.18 -39.28 -0.40 -1.77 16 25 C -0.18 -2.75 10.11 -39.44 -0.40 -3.15 16 26 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 27 N -0.46 -9.21 10.27 -9.47 -0.10 -9.31 16 28 C 0.00 -0.10 7.60 -38.86 -0.30 -0.40 16 29 C -0.11 -2.24 6.34 -105.15 -0.67 -2.91 16 30 C -0.14 -2.51 6.32 -102.69 -0.65 -3.16 16 31 C -0.08 -1.42 10.17 36.00 0.37 -1.06 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.82 7.04 -51.93 -0.37 0.45 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.05 1.25 5.48 -51.93 -0.28 0.97 16 38 H 0.03 0.77 7.98 -51.93 -0.41 0.35 16 39 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 40 H 0.09 1.66 7.49 -51.93 -0.39 1.27 16 41 H 0.09 1.46 7.85 -51.93 -0.41 1.05 16 42 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 43 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 46 H 0.16 3.91 4.94 -52.48 -0.26 3.65 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.83 7.06 -51.93 -0.37 0.46 16 49 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 406.96 15.07 6.13 6.13 Total: -1.00 -31.06 406.96 -10.84 -41.89 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -6.58 Total: 12.83 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -5.62 Total: -9.22 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.16 Total: -52.85 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.06 -10.84 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660179.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.702 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds