Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99671 * 2 1 4 4 H 1.48497 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46704 * 299.99878 * 3 2 1 6 6 H 1.48499 * 109.47257 * 59.99685 * 3 2 1 7 7 C 1.37872 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46850 * 180.02562 * 10 9 7 12 12 C 1.35979 * 116.99758 * 180.02562 * 11 10 9 13 13 C 1.38792 * 120.49690 * 0.26198 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.26175 * 13 12 11 15 15 C 1.38091 * 119.35750 * 359.45641 * 14 13 12 16 16 N 1.31953 * 120.95463 * 0.30126 * 15 14 13 17 17 C 1.32288 * 121.69246 * 359.97352 * 16 15 14 18 18 N 1.39493 * 119.72938 * 179.97438 * 17 16 15 19 19 C 1.34770 * 120.00017 * 0.02562 * 18 17 16 20 20 O 1.21582 * 120.00405 * 359.97438 * 19 18 17 21 21 C 1.47617 * 120.00096 * 179.97438 * 19 18 17 22 22 C 1.39716 * 120.12902 * 359.72466 * 21 19 18 23 23 C 1.37775 * 119.89143 * 179.74610 * 22 21 19 24 24 C 1.38724 * 120.15392 * 0.52909 * 23 22 21 25 25 F 1.35097 * 119.86582 * 179.76903 * 24 23 22 26 26 C 1.38565 * 120.26793 * 359.74173 * 24 23 22 27 27 C 1.38031 * 120.10695 * 359.97438 * 26 24 23 28 28 Cl 1.73597 * 120.07884 * 179.97438 * 27 26 24 29 29 H 0.96996 * 120.00789 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46695 * 59.99892 * 9 7 2 31 31 H 1.09007 * 109.46755 * 300.00379 * 9 7 2 32 32 H 1.09007 * 109.46809 * 60.00355 * 10 9 7 33 33 H 1.08993 * 109.47155 * 300.00081 * 10 9 7 34 34 H 1.08001 * 120.77756 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 36 36 H 1.07996 * 119.52010 * 180.27913 * 15 14 13 37 37 H 0.96997 * 119.99551 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.05301 * 359.97438 * 22 21 19 39 39 H 1.07994 * 119.92279 * 180.27398 * 23 22 21 40 40 H 1.07998 * 119.94732 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0015 11 8 1.5311 -4.8996 0.0020 12 6 2.2718 -6.0399 0.0024 13 6 3.6583 -5.9792 0.0077 14 6 4.3722 -7.1694 0.0024 15 6 3.6883 -8.3690 0.0033 16 7 2.3691 -8.3983 0.0033 17 6 1.6494 -7.2883 0.0029 18 7 0.2567 -7.3669 0.0024 19 6 -0.3503 -8.5702 0.0028 20 8 0.3159 -9.5872 0.0032 21 6 -1.8241 -8.6534 0.0028 22 6 -2.5925 -7.4865 0.0082 23 6 -3.9677 -7.5699 0.0029 24 6 -4.5907 -8.8093 0.0033 25 9 -5.9396 -8.8843 0.0028 26 6 -3.8351 -9.9708 0.0036 27 6 -2.4566 -9.9000 0.0030 28 17 -1.5106 -11.3556 0.0041 29 1 -0.4851 0.8399 -0.0004 30 1 0.6242 -2.5575 -0.8880 31 1 0.6248 -2.5563 0.8920 32 1 2.8728 -3.6037 0.8910 33 1 2.8715 -3.6045 -0.8890 34 1 4.1698 -5.0280 0.0121 35 1 5.4522 -7.1575 0.0020 36 1 4.2412 -9.2967 0.0037 37 1 -0.2748 -6.5555 0.0017 38 1 -2.1091 -6.5207 0.0128 39 1 -4.5620 -6.6682 0.0026 40 1 -4.3255 -10.9330 0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069664236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -43.511153 kcal Electronic energy + Delta-G solvation = -28659.089444 eV Core-core repulsion = 24187.537696 eV Total energy + Delta-G solvation = -4471.551749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.41946 -41.07334 -39.98976 -38.45526 -37.73786 -36.68490 -34.94214 -33.51523 -32.01597 -31.49087 -31.15872 -30.42952 -29.00116 -25.49871 -24.77207 -23.66841 -23.20016 -22.66692 -21.19074 -20.46382 -18.97104 -18.15981 -17.78591 -17.55087 -16.66715 -16.24067 -16.15048 -16.07179 -15.85050 -15.37409 -15.10916 -14.98084 -14.75273 -14.60177 -14.18052 -13.94372 -13.84678 -13.77730 -13.27727 -13.06419 -12.85061 -12.44378 -12.07412 -11.97263 -11.81516 -11.66303 -11.41111 -11.08980 -11.04176 -10.78270 -10.70861 -10.09486 -10.08832 -9.80599 -9.50418 -9.43091 -9.28328 -9.14184 -9.04721 -8.55992 -7.71515 -6.21626 -4.26434 0.14066 0.57138 1.20742 1.40971 1.74480 2.49503 2.70932 3.19408 3.26720 3.29110 3.29539 3.47757 3.68171 3.98906 4.12498 4.17119 4.30973 4.42293 4.61432 4.67834 4.89804 4.91489 5.04130 5.15658 5.19261 5.26453 5.40566 5.42795 5.56721 5.59008 5.82038 5.85889 6.01298 6.12581 6.15995 6.28419 6.49441 6.57192 7.14122 7.29618 7.48059 7.59333 7.80350 7.97222 8.10594 8.25747 8.78893 9.38887 10.89806 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.002555 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.695362 B =10955.062103 C =13998.307801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.317 6.317 12 C 0.069 3.931 13 C -0.147 4.147 14 C -0.158 4.158 15 C 0.076 3.924 16 N -0.441 5.441 17 C 0.329 3.671 18 N -0.646 5.646 19 C 0.545 3.455 20 O -0.451 6.451 21 C -0.138 4.138 22 C -0.043 4.043 23 C -0.154 4.154 24 C 0.138 3.862 25 F -0.127 7.127 26 C -0.159 4.159 27 C 0.041 3.959 28 Cl -0.015 7.015 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.422 0.578 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.062 -18.978 0.019 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.230 6.230 12 C 0.017 3.983 13 C -0.174 4.174 14 C -0.179 4.179 15 C -0.081 4.081 16 N -0.156 5.156 17 C 0.097 3.903 18 N -0.295 5.295 19 C 0.330 3.670 20 O -0.320 6.320 21 C -0.143 4.143 22 C -0.062 4.062 23 C -0.173 4.173 24 C 0.118 3.882 25 F -0.106 7.106 26 C -0.179 4.179 27 C 0.013 3.987 28 Cl 0.015 6.985 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.261 0.739 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.411 -20.534 0.020 21.003 hybrid contribution 0.613 2.272 -0.001 2.353 sum -3.798 -18.262 0.019 18.653 Atomic orbital electron populations 1.69960 1.06093 1.27006 1.49602 1.24971 0.94911 0.99413 0.94767 0.86440 0.80006 0.83210 0.77800 1.19622 1.20790 1.20785 1.20977 0.93108 0.90101 1.52417 0.92289 1.19133 0.94135 0.88929 0.98866 1.23408 0.97275 0.80218 0.99903 1.86087 1.36326 1.12951 1.87600 1.19578 0.91162 0.87031 1.00521 1.21614 0.92199 1.00401 1.03185 1.21912 1.01244 0.92526 1.02258 1.22414 0.88749 0.97912 0.98984 1.67615 1.07900 1.26811 1.13320 1.17697 0.84428 0.87037 1.01176 1.43271 1.04019 1.09999 1.72242 1.18027 0.86775 0.83741 0.78417 1.90970 1.64886 1.33084 1.43082 1.19819 0.93950 0.92674 1.07814 1.21295 0.93052 0.97952 0.93866 1.21245 0.95305 0.97224 1.03479 1.17705 0.77176 0.93888 0.99417 1.91558 1.28558 1.97145 1.93309 1.20959 0.91934 0.99228 1.05760 1.20673 0.91194 0.88642 0.98227 1.98447 1.71484 1.32841 1.95757 0.92678 0.95342 0.95341 0.92891 0.92892 0.83684 0.84746 0.82561 0.73940 0.83131 0.82970 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -13.76 9.11 -34.44 -0.31 -14.08 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.63 5.34 -27.88 -0.15 0.48 16 10 C 0.07 1.25 4.70 37.16 0.17 1.42 16 11 O -0.32 -5.54 9.38 -19.67 -0.18 -5.72 16 12 C 0.07 1.09 6.72 -38.91 -0.26 0.83 16 13 C -0.15 -2.05 9.14 -39.17 -0.36 -2.41 16 14 C -0.16 -1.88 10.10 -39.43 -0.40 -2.28 16 15 C 0.08 0.99 11.17 -17.55 -0.20 0.79 16 16 N -0.44 -7.07 7.87 -12.24 -0.10 -7.17 16 17 C 0.33 5.22 7.44 -154.50 -1.15 4.07 16 18 N -0.65 -9.07 5.34 -12.22 -0.07 -9.14 16 19 C 0.54 7.70 7.72 -12.44 -0.10 7.60 16 20 O -0.45 -7.49 12.21 5.29 0.06 -7.43 16 21 C -0.14 -1.57 5.88 -104.94 -0.62 -2.19 16 22 C -0.04 -0.39 9.53 -39.20 -0.37 -0.76 16 23 C -0.15 -1.26 10.01 -39.57 -0.40 -1.65 16 24 C 0.14 1.21 7.30 -39.28 -0.29 0.93 16 25 F -0.13 -1.16 17.26 2.25 0.04 -1.12 16 26 C -0.16 -1.42 9.79 -39.54 -0.39 -1.80 16 27 C 0.04 0.45 6.35 -39.08 -0.25 0.20 16 28 Cl -0.02 -0.18 26.02 -51.86 -1.35 -1.53 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.96 7.69 -51.92 -0.40 0.56 16 33 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 34 H 0.15 1.87 6.44 -52.49 -0.34 1.53 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.42 5.13 6.07 -40.82 -0.25 4.88 16 38 H 0.15 1.14 6.40 -52.49 -0.34 0.81 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -31.30 366.88 -9.30 -40.61 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.80 Total: 2.22 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -5.15 Total: -7.29 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.57 Total: -40.55 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.12 Total: -13.15 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.30 -9.30 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069664236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.905 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds