Wall clock time and date at job start Tue Mar 31 2020 06:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86809 * 119.99671 * 2 1 4 4 H 1.48497 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46704 * 299.99878 * 3 2 1 6 6 H 1.48499 * 109.47257 * 59.99685 * 3 2 1 7 7 C 1.37872 * 120.00668 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00640 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46850 * 180.02562 * 10 9 7 12 12 C 1.35979 * 116.99758 * 180.02562 * 11 10 9 13 13 C 1.38792 * 120.49690 * 0.26198 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.26175 * 13 12 11 15 15 C 1.38091 * 119.35750 * 359.45641 * 14 13 12 16 16 N 1.31953 * 120.95463 * 0.30126 * 15 14 13 17 17 C 1.32288 * 121.69246 * 359.97352 * 16 15 14 18 18 N 1.39493 * 119.72938 * 179.97438 * 17 16 15 19 19 C 1.34770 * 120.00017 * 0.02562 * 18 17 16 20 20 O 1.21582 * 120.00405 * 359.97438 * 19 18 17 21 21 C 1.47617 * 120.00096 * 179.97438 * 19 18 17 22 22 C 1.39716 * 120.12902 * 359.72466 * 21 19 18 23 23 C 1.37775 * 119.89143 * 179.74610 * 22 21 19 24 24 C 1.38724 * 120.15392 * 0.52909 * 23 22 21 25 25 F 1.35097 * 119.86582 * 179.76903 * 24 23 22 26 26 C 1.38565 * 120.26793 * 359.74173 * 24 23 22 27 27 C 1.38031 * 120.10695 * 359.97438 * 26 24 23 28 28 Cl 1.73597 * 120.07884 * 179.97438 * 27 26 24 29 29 H 0.96996 * 120.00789 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.46695 * 59.99892 * 9 7 2 31 31 H 1.09007 * 109.46755 * 300.00379 * 9 7 2 32 32 H 1.09007 * 109.46809 * 60.00355 * 10 9 7 33 33 H 1.08993 * 109.47155 * 300.00081 * 10 9 7 34 34 H 1.08001 * 120.77756 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 36 36 H 1.07996 * 119.52010 * 180.27913 * 15 14 13 37 37 H 0.96997 * 119.99551 * 180.02562 * 18 17 16 38 38 H 1.08000 * 120.05301 * 359.97438 * 22 21 19 39 39 H 1.07994 * 119.92279 * 180.27398 * 23 22 21 40 40 H 1.07998 * 119.94732 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0015 11 8 1.5311 -4.8996 0.0020 12 6 2.2718 -6.0399 0.0024 13 6 3.6583 -5.9792 0.0077 14 6 4.3722 -7.1694 0.0024 15 6 3.6883 -8.3690 0.0033 16 7 2.3691 -8.3983 0.0033 17 6 1.6494 -7.2883 0.0029 18 7 0.2567 -7.3669 0.0024 19 6 -0.3503 -8.5702 0.0028 20 8 0.3159 -9.5872 0.0032 21 6 -1.8241 -8.6534 0.0028 22 6 -2.5925 -7.4865 0.0082 23 6 -3.9677 -7.5699 0.0029 24 6 -4.5907 -8.8093 0.0033 25 9 -5.9396 -8.8843 0.0028 26 6 -3.8351 -9.9708 0.0036 27 6 -2.4566 -9.9000 0.0030 28 17 -1.5106 -11.3556 0.0041 29 1 -0.4851 0.8399 -0.0004 30 1 0.6242 -2.5575 -0.8880 31 1 0.6248 -2.5563 0.8920 32 1 2.8728 -3.6037 0.8910 33 1 2.8715 -3.6045 -0.8890 34 1 4.1698 -5.0280 0.0121 35 1 5.4522 -7.1575 0.0020 36 1 4.2412 -9.2967 0.0037 37 1 -0.2748 -6.5555 0.0017 38 1 -2.1091 -6.5207 0.0128 39 1 -4.5620 -6.6682 0.0026 40 1 -4.3255 -10.9330 0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069664236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:53 Heat of formation + Delta-G solvation = -60.047984 kcal Electronic energy + Delta-G solvation = -28659.806535 eV Core-core repulsion = 24187.537696 eV Total energy + Delta-G solvation = -4472.268840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.14886 -42.15276 -40.97783 -39.49459 -38.91032 -37.53923 -36.04571 -35.43007 -33.01026 -32.66064 -32.09175 -31.78433 -30.16924 -27.15325 -25.82775 -24.60748 -24.32409 -23.66654 -22.69696 -21.57566 -19.99230 -19.25681 -18.77085 -18.63966 -18.03399 -17.48368 -17.23819 -17.17775 -16.86512 -16.49371 -16.27693 -16.19631 -15.93385 -15.65410 -15.19537 -14.92518 -14.89050 -14.61629 -14.35265 -14.21972 -14.05050 -13.99693 -13.58507 -13.28187 -12.77644 -12.76713 -12.54995 -12.48075 -12.42887 -12.30955 -11.87636 -11.69712 -11.60514 -11.38444 -11.09591 -10.59475 -10.40599 -10.25175 -10.13912 -9.96108 -8.85306 -8.24157 -6.35827 -0.69192 -0.15893 0.16160 0.30578 0.91160 1.43090 1.44206 1.56241 1.60136 1.69931 2.11977 2.39682 2.45525 2.90795 2.92620 3.11554 3.24407 3.39110 3.63610 3.75437 3.86668 3.87842 4.00595 4.13084 4.17644 4.32183 4.35765 4.47873 4.52452 4.66715 4.77391 4.85267 4.86285 4.97695 5.14264 5.23837 5.33739 5.43810 5.53897 5.54485 5.75481 6.10069 6.12186 6.33715 6.79080 6.88316 7.20283 7.34105 8.88431 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.009137 B = 0.002555 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.695362 B =10955.062103 C =13998.307801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.328 6.328 12 C 0.044 3.956 13 C -0.149 4.149 14 C -0.144 4.144 15 C 0.074 3.926 16 N -0.470 5.470 17 C 0.313 3.687 18 N -0.646 5.646 19 C 0.543 3.457 20 O -0.482 6.482 21 C -0.153 4.153 22 C -0.040 4.040 23 C -0.146 4.146 24 C 0.141 3.859 25 F -0.126 7.126 26 C -0.153 4.153 27 C 0.030 3.970 28 Cl -0.030 7.030 29 H 0.266 0.734 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.426 0.574 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -18.715 0.021 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.007 4.007 13 C -0.175 4.175 14 C -0.164 4.164 15 C -0.082 4.082 16 N -0.185 5.185 17 C 0.081 3.919 18 N -0.295 5.295 19 C 0.330 3.670 20 O -0.353 6.353 21 C -0.157 4.157 22 C -0.059 4.059 23 C -0.164 4.164 24 C 0.121 3.879 25 F -0.105 7.105 26 C -0.172 4.172 27 C 0.002 3.998 28 Cl 0.000 7.000 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.266 0.734 38 H 0.180 0.820 39 H 0.193 0.807 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.191 -20.276 0.023 20.526 hybrid contribution 0.226 2.093 -0.002 2.105 sum -2.965 -18.183 0.021 18.423 Atomic orbital electron populations 1.70085 1.07768 1.27997 1.50804 1.25902 0.95742 1.03248 0.94416 0.85367 0.79208 0.78597 0.77691 1.18258 1.20546 1.20534 1.21423 0.93832 0.91114 1.51702 0.91250 1.18947 0.94514 0.90816 0.96446 1.22963 0.95660 0.79602 1.00879 1.86013 1.36609 1.12992 1.88500 1.19716 0.92121 0.86161 1.02681 1.21903 0.91451 1.01832 1.02328 1.22286 1.03070 0.91094 0.99978 1.23040 0.88077 0.99738 0.97391 1.67671 1.09457 1.27085 1.14335 1.17888 0.85119 0.87132 1.01770 1.43333 1.03796 1.10348 1.72014 1.18433 0.87813 0.83264 0.77517 1.90935 1.65822 1.33868 1.44681 1.19734 0.92543 0.93773 1.09662 1.21416 0.93430 0.97679 0.93333 1.21484 0.94940 0.97976 1.02036 1.17764 0.77160 0.94025 0.98959 1.91567 1.28500 1.97149 1.93239 1.21098 0.91080 1.00307 1.04695 1.20759 0.91788 0.87949 0.99279 1.98436 1.72051 1.33598 1.95929 0.92557 0.97798 0.97791 0.91826 0.91843 0.82545 0.80779 0.79753 0.73369 0.82023 0.80707 0.81101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.90 13.29 21.45 0.28 -52.62 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -28.25 9.11 25.60 0.23 -28.01 16 8 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.46 5.34 29.85 0.16 1.62 16 10 C 0.08 3.12 4.70 71.98 0.34 3.46 16 11 O -0.33 -11.55 9.38 -93.31 -0.88 -12.43 16 12 C 0.04 1.38 6.72 22.70 0.15 1.53 16 13 C -0.15 -3.85 9.14 22.53 0.21 -3.65 16 14 C -0.14 -2.99 10.10 22.37 0.23 -2.76 16 15 C 0.07 1.79 11.17 84.64 0.95 2.73 16 16 N -0.47 -14.90 7.87 -192.63 -1.52 -16.42 16 17 C 0.31 9.99 7.44 133.02 0.99 10.98 16 18 N -0.65 -18.65 5.34 -310.84 -1.66 -20.31 16 19 C 0.54 15.78 7.72 86.72 0.67 16.45 16 20 O -0.48 -16.48 12.21 -3.97 -0.05 -16.53 16 21 C -0.15 -3.52 5.88 -20.07 -0.12 -3.63 16 22 C -0.04 -0.71 9.53 22.52 0.21 -0.49 16 23 C -0.15 -2.17 10.01 22.28 0.22 -1.95 16 24 C 0.14 2.26 7.30 22.46 0.16 2.43 16 25 F -0.13 -2.07 17.26 44.97 0.78 -1.30 16 26 C -0.15 -2.56 9.79 22.30 0.22 -2.34 16 27 C 0.03 0.66 6.35 22.60 0.14 0.80 16 28 Cl -0.03 -0.72 26.02 -2.72 -0.07 -0.79 16 29 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.06 2.23 7.69 -2.38 -0.02 2.21 16 33 H 0.06 2.22 7.71 -2.39 -0.02 2.21 16 34 H 0.16 3.64 6.44 -2.91 -0.02 3.62 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 36 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.43 10.80 6.07 -92.71 -0.56 10.24 16 38 H 0.16 2.43 6.40 -2.91 -0.02 2.41 16 39 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.54 366.88 4.70 -63.83 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.56 Total: 15.38 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.23 Total: -2.07 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.89 Total: -89.35 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.92 Total: -28.96 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.78 Total: -1.30 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -68.54 4.70 -63.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069664236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.786 kcal (2) G-P(sol) polarization free energy of solvation -68.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds