Wall clock time and date at job start Tue Mar 31 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47139 * 2 1 4 4 C 1.53001 * 109.46916 * 239.99913 * 2 1 3 5 5 C 1.52999 * 109.46997 * 120.00089 * 2 1 3 6 6 N 1.46903 * 109.47308 * 35.66213 * 5 2 1 7 7 C 1.46898 * 110.99870 * 287.40907 * 6 5 2 8 8 C 1.50701 * 109.47114 * 313.26772 * 7 6 5 9 9 H 1.07996 * 120.00053 * 4.77519 * 8 7 6 10 10 C 1.37877 * 120.00067 * 184.78068 * 8 7 6 11 11 N 1.31520 * 119.99941 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00247 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47102 * 60.00158 * 12 10 8 14 14 H 1.48504 * 109.47103 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47133 * 300.00041 * 12 10 8 16 16 C 1.46903 * 111.00013 * 51.36414 * 6 5 2 17 17 C 1.50693 * 109.47063 * 66.75064 * 16 6 5 18 18 N 1.30378 * 126.18384 * 89.98040 * 17 16 6 19 19 N 1.28663 * 109.53000 * 180.02562 * 18 17 16 20 20 C 1.31249 * 109.25026 * 359.97438 * 19 18 17 21 21 C 1.47816 * 126.38244 * 179.73566 * 20 19 18 22 22 C 1.39579 * 120.14840 * 0.03010 * 21 20 19 23 23 C 1.37934 * 119.86429 * 179.97438 * 22 21 20 24 24 C 1.38387 * 120.17810 * 0.02562 * 23 22 21 25 25 C 1.38301 * 120.30321 * 359.97438 * 24 23 22 26 26 C 1.38130 * 120.12646 * 359.70864 * 25 24 23 27 27 Cl 1.73599 * 120.08470 * 180.27463 * 26 25 24 28 28 O 1.34426 * 126.19002 * 270.01482 * 17 16 6 29 29 H 1.09000 * 109.46830 * 299.36003 * 1 2 3 30 30 H 1.08998 * 109.47103 * 59.35673 * 1 2 3 31 31 H 1.08996 * 109.47084 * 179.36074 * 1 2 3 32 32 H 1.09005 * 109.47279 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47517 * 299.99806 * 3 2 1 34 34 H 1.08993 * 109.47517 * 60.00283 * 3 2 1 35 35 H 1.09006 * 109.47366 * 318.96112 * 4 2 1 36 36 H 1.09003 * 109.47439 * 78.95989 * 4 2 1 37 37 H 1.09001 * 109.47318 * 198.95829 * 4 2 1 38 38 H 1.09000 * 109.47314 * 275.65821 * 5 2 1 39 39 H 1.09005 * 109.46930 * 155.65911 * 5 2 1 40 40 H 1.09007 * 109.47087 * 73.26654 * 7 6 5 41 41 H 1.09000 * 109.47116 * 193.26578 * 7 6 5 42 42 H 0.96998 * 120.00616 * 180.02562 * 11 10 8 43 43 H 1.09003 * 109.46785 * 306.75354 * 16 6 5 44 44 H 1.08995 * 109.46729 * 186.75398 * 16 6 5 45 45 H 1.08004 * 120.06610 * 359.95883 * 22 21 20 46 46 H 1.08003 * 119.91183 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.85019 * 179.97438 * 24 23 22 48 48 H 1.07996 * 119.93414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.1423 -1.8389 1.5702 7 6 -0.1324 -1.3511 2.1133 8 6 0.1370 -0.3068 3.1660 9 1 1.1482 0.0229 3.3532 10 6 -0.9076 0.2276 3.8900 11 7 -2.1391 -0.1736 3.6618 12 14 -0.5737 1.5215 5.1953 13 1 0.0693 2.7037 4.5673 14 1 -1.8547 1.9315 5.8249 15 1 0.3295 0.9585 6.2308 16 6 0.9217 -2.6914 0.3942 17 6 2.2098 -3.3805 0.0247 18 7 2.6182 -4.5372 0.4664 19 7 3.7596 -4.8187 -0.0564 20 6 4.1213 -3.8434 -0.8568 21 6 5.3692 -3.7740 -1.6461 22 6 6.2982 -4.8137 -1.5816 23 6 7.4605 -4.7431 -2.3210 24 6 7.7075 -3.6445 -3.1255 25 6 6.7919 -2.6103 -3.1949 26 6 5.6209 -2.6710 -2.4648 27 17 4.4690 -1.3756 -2.5581 28 8 3.1459 -2.9136 -0.8196 29 1 -0.3633 0.5039 0.8957 30 1 -0.3633 0.5238 -0.8841 31 1 -0.3633 -1.0276 -0.0115 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.4303 -1.6061 -1.4323 36 1 1.9756 -0.0519 -2.1071 37 1 3.0774 -1.0197 -1.0985 38 1 2.0656 -0.0238 2.0865 39 1 3.0439 -1.1033 1.0638 40 1 -0.7256 -0.9132 1.3105 41 1 -0.6798 -2.1822 2.5578 42 1 -2.8741 0.2026 4.1709 43 1 0.5852 -2.0776 -0.4414 44 1 0.1627 -3.4389 0.6247 45 1 6.1076 -5.6716 -0.9537 46 1 8.1797 -5.5473 -2.2719 47 1 8.6194 -3.5945 -3.7019 48 1 6.9909 -1.7557 -3.8243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069699729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:27 Heat of formation + Delta-G solvation = 131.772061 kcal Electronic energy + Delta-G solvation = -31942.918089 eV Core-core repulsion = 27835.979253 eV Total energy + Delta-G solvation = -4106.938837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.95930 -39.69997 -39.49416 -36.82442 -35.94586 -34.04377 -33.31159 -32.44200 -31.24443 -30.43634 -28.19178 -27.89864 -26.57007 -25.98139 -24.63659 -24.31312 -23.06740 -21.91908 -21.77792 -20.41231 -18.69320 -18.11190 -17.30770 -16.84239 -16.59654 -16.13449 -15.78035 -15.22393 -15.21953 -14.66527 -14.46012 -14.19113 -14.14820 -13.95347 -13.88612 -13.18071 -12.95820 -12.65270 -12.34317 -12.24812 -12.12838 -11.91599 -11.85858 -11.80977 -11.49157 -11.42177 -11.32622 -11.07776 -10.92595 -10.89488 -10.77901 -10.74088 -10.39283 -10.26686 -10.20982 -10.09517 -9.71744 -9.59587 -9.24312 -9.05066 -8.66589 -8.50287 -7.08718 -6.09639 -4.09607 0.20253 0.76025 1.64374 1.77056 2.34761 2.59828 3.27033 3.28918 3.34184 3.36944 3.74378 4.26231 4.37590 4.44375 4.66510 4.71929 4.83571 4.90085 5.02343 5.20864 5.25536 5.28780 5.31606 5.32532 5.39516 5.50330 5.57353 5.76510 5.80442 5.83990 5.86734 5.93953 5.96689 5.98209 6.05708 6.10153 6.25242 6.26305 6.37085 6.40537 6.47947 6.65809 6.72979 6.83904 7.11778 7.25521 7.33478 7.66150 7.95837 8.09163 8.42560 8.49469 8.94788 9.52992 11.01072 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002983 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.741022 B = 9382.716224 C =10054.989922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.132 4.132 4 C -0.171 4.171 5 C 0.061 3.939 6 N -0.522 5.522 7 C 0.149 3.851 8 C -0.511 4.511 9 H 0.065 0.935 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.110 3.890 17 C 0.203 3.797 18 N -0.281 5.281 19 N -0.268 5.268 20 C 0.168 3.832 21 C -0.001 4.001 22 C -0.063 4.063 23 C -0.117 4.117 24 C -0.091 4.091 25 C -0.113 4.113 26 C -0.025 4.025 27 Cl -0.026 7.026 28 O -0.193 6.193 29 H 0.099 0.901 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.262 0.738 43 H 0.096 0.904 44 H 0.110 0.890 45 H 0.148 0.852 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.795 -4.037 -17.039 24.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.096 4.096 3 C -0.190 4.190 4 C -0.227 4.227 5 C -0.067 4.067 6 N -0.246 5.246 7 C 0.026 3.974 8 C -0.549 4.549 9 H 0.083 0.917 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.019 4.019 17 C -0.007 4.007 18 N -0.128 5.128 19 N -0.116 5.116 20 C -0.040 4.040 21 C -0.003 4.003 22 C -0.082 4.082 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.054 4.054 27 Cl 0.003 6.997 28 O -0.072 6.072 29 H 0.118 0.882 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.166 0.834 46 H 0.157 0.843 47 H 0.155 0.845 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 16.670 -5.298 -15.924 23.655 hybrid contribution -0.343 2.341 -0.406 2.401 sum 16.327 -2.957 -16.329 23.280 Atomic orbital electron populations 1.22888 0.94126 1.02255 1.02637 1.21178 0.96515 0.95872 0.96027 1.21783 0.99919 0.95671 1.01622 1.23049 1.02635 0.99635 0.97366 1.22469 0.94303 0.93099 0.96825 1.62400 1.18432 1.19590 1.24198 1.20918 0.84547 0.95983 0.95988 1.21147 0.93460 1.21126 1.19163 0.91713 1.24916 0.95046 0.97054 0.97073 1.69931 0.98764 1.43142 1.41375 0.86643 0.77458 0.81793 0.82058 1.20286 1.21334 1.20192 1.21465 0.85595 0.97733 0.97095 1.28437 0.93409 0.91229 0.87583 1.74436 1.04754 1.13336 1.20276 1.74647 1.06772 1.22488 1.07737 1.25115 0.92214 0.86446 1.00248 1.17112 0.90123 0.95791 0.97307 1.21249 0.91978 0.97158 0.97847 1.21210 0.96998 0.98813 0.96473 1.21346 0.98981 0.92898 0.97793 1.21051 0.92214 1.00287 0.99625 1.21337 0.93704 0.91334 0.99004 1.98462 1.56587 1.48063 1.96542 1.85418 1.26284 1.42481 1.53029 0.88234 0.94849 0.91268 0.93551 0.93600 0.91935 0.92198 0.93852 0.90082 0.87997 0.93745 0.93510 0.94952 0.92788 0.88712 0.87171 0.83428 0.84337 0.84505 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 6.19 37.16 0.23 -2.69 16 2 C -0.09 -1.56 0.77 -154.51 -0.12 -1.68 16 3 C -0.13 -2.04 8.26 37.15 0.31 -1.73 16 4 C -0.17 -2.53 5.28 37.16 0.20 -2.34 16 5 C 0.06 1.17 4.58 -3.82 -0.02 1.15 16 6 N -0.52 -10.72 4.84 -237.51 -1.15 -11.87 16 7 C 0.15 3.51 4.17 -4.98 -0.02 3.49 16 8 C -0.51 -13.17 7.53 -34.44 -0.26 -13.43 16 9 H 0.06 1.67 5.61 -52.49 -0.29 1.37 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 12 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 C 0.11 1.94 4.47 -4.98 -0.02 1.92 16 17 C 0.20 3.59 6.60 -12.90 -0.09 3.50 16 18 N -0.28 -5.35 12.22 32.58 0.40 -4.95 16 19 N -0.27 -4.67 11.92 32.07 0.38 -4.29 16 20 C 0.17 2.59 7.89 -13.88 -0.11 2.49 16 21 C 0.00 -0.01 5.87 -104.95 -0.62 -0.63 16 22 C -0.06 -0.60 9.70 -39.19 -0.38 -0.98 16 23 C -0.12 -0.79 10.03 -39.64 -0.40 -1.19 16 24 C -0.09 -0.57 10.04 -39.50 -0.40 -0.96 16 25 C -0.11 -0.89 9.82 -39.60 -0.39 -1.28 16 26 C -0.03 -0.28 6.35 -39.10 -0.25 -0.52 16 27 Cl -0.03 -0.31 22.49 -51.86 -1.17 -1.47 16 28 O -0.19 -3.10 4.57 3.98 0.02 -3.08 16 29 H 0.10 2.13 5.74 -51.93 -0.30 1.83 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.25 3.34 -51.93 -0.17 1.08 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.06 0.90 4.24 -51.93 -0.22 0.68 16 36 H 0.04 0.60 7.99 -51.93 -0.42 0.18 16 37 H 0.08 1.21 2.59 -51.93 -0.13 1.07 16 38 H 0.10 2.14 4.99 -51.93 -0.26 1.88 16 39 H 0.04 0.84 6.81 -51.93 -0.35 0.49 16 40 H 0.05 1.09 3.26 -58.91 -0.19 0.90 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 1.55 2.42 -51.93 -0.13 1.43 16 44 H 0.11 1.90 8.07 -51.93 -0.42 1.48 16 45 H 0.15 1.37 7.87 -52.48 -0.41 0.96 16 46 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -29.53 369.25 -8.47 -38.00 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.81 Total: 3.89 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -2.42 Total: -13.36 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.37 Total: -45.34 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.02 Total: -3.08 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.17 Total: -1.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.53 -8.47 -38.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069699729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.771 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds