Wall clock time and date at job start Tue Mar 31 2020 05:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47139 * 2 1 4 4 C 1.53001 * 109.46916 * 239.99913 * 2 1 3 5 5 C 1.52999 * 109.46997 * 120.00089 * 2 1 3 6 6 N 1.46903 * 109.47308 * 35.66213 * 5 2 1 7 7 C 1.46898 * 110.99870 * 287.40907 * 6 5 2 8 8 C 1.50701 * 109.47114 * 313.26772 * 7 6 5 9 9 H 1.07996 * 120.00053 * 4.77519 * 8 7 6 10 10 C 1.37877 * 120.00067 * 184.78068 * 8 7 6 11 11 N 1.31520 * 119.99941 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00247 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47102 * 60.00158 * 12 10 8 14 14 H 1.48504 * 109.47103 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47133 * 300.00041 * 12 10 8 16 16 C 1.46903 * 111.00013 * 51.36414 * 6 5 2 17 17 C 1.50693 * 109.47063 * 66.75064 * 16 6 5 18 18 N 1.30378 * 126.18384 * 89.98040 * 17 16 6 19 19 N 1.28663 * 109.53000 * 180.02562 * 18 17 16 20 20 C 1.31249 * 109.25026 * 359.97438 * 19 18 17 21 21 C 1.47816 * 126.38244 * 179.73566 * 20 19 18 22 22 C 1.39579 * 120.14840 * 0.03010 * 21 20 19 23 23 C 1.37934 * 119.86429 * 179.97438 * 22 21 20 24 24 C 1.38387 * 120.17810 * 0.02562 * 23 22 21 25 25 C 1.38301 * 120.30321 * 359.97438 * 24 23 22 26 26 C 1.38130 * 120.12646 * 359.70864 * 25 24 23 27 27 Cl 1.73599 * 120.08470 * 180.27463 * 26 25 24 28 28 O 1.34426 * 126.19002 * 270.01482 * 17 16 6 29 29 H 1.09000 * 109.46830 * 299.36003 * 1 2 3 30 30 H 1.08998 * 109.47103 * 59.35673 * 1 2 3 31 31 H 1.08996 * 109.47084 * 179.36074 * 1 2 3 32 32 H 1.09005 * 109.47279 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47517 * 299.99806 * 3 2 1 34 34 H 1.08993 * 109.47517 * 60.00283 * 3 2 1 35 35 H 1.09006 * 109.47366 * 318.96112 * 4 2 1 36 36 H 1.09003 * 109.47439 * 78.95989 * 4 2 1 37 37 H 1.09001 * 109.47318 * 198.95829 * 4 2 1 38 38 H 1.09000 * 109.47314 * 275.65821 * 5 2 1 39 39 H 1.09005 * 109.46930 * 155.65911 * 5 2 1 40 40 H 1.09007 * 109.47087 * 73.26654 * 7 6 5 41 41 H 1.09000 * 109.47116 * 193.26578 * 7 6 5 42 42 H 0.96998 * 120.00616 * 180.02562 * 11 10 8 43 43 H 1.09003 * 109.46785 * 306.75354 * 16 6 5 44 44 H 1.08995 * 109.46729 * 186.75398 * 16 6 5 45 45 H 1.08004 * 120.06610 * 359.95883 * 22 21 20 46 46 H 1.08003 * 119.91183 * 180.02562 * 23 22 21 47 47 H 1.08000 * 119.85019 * 179.97438 * 24 23 22 48 48 H 1.07996 * 119.93414 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2492 6 7 1.1423 -1.8389 1.5702 7 6 -0.1324 -1.3511 2.1133 8 6 0.1370 -0.3068 3.1660 9 1 1.1482 0.0229 3.3532 10 6 -0.9076 0.2276 3.8900 11 7 -2.1391 -0.1736 3.6618 12 14 -0.5737 1.5215 5.1953 13 1 0.0693 2.7037 4.5673 14 1 -1.8547 1.9315 5.8249 15 1 0.3295 0.9585 6.2308 16 6 0.9217 -2.6914 0.3942 17 6 2.2098 -3.3805 0.0247 18 7 2.6182 -4.5372 0.4664 19 7 3.7596 -4.8187 -0.0564 20 6 4.1213 -3.8434 -0.8568 21 6 5.3692 -3.7740 -1.6461 22 6 6.2982 -4.8137 -1.5816 23 6 7.4605 -4.7431 -2.3210 24 6 7.7075 -3.6445 -3.1255 25 6 6.7919 -2.6103 -3.1949 26 6 5.6209 -2.6710 -2.4648 27 17 4.4690 -1.3756 -2.5581 28 8 3.1459 -2.9136 -0.8196 29 1 -0.3633 0.5039 0.8957 30 1 -0.3633 0.5238 -0.8841 31 1 -0.3633 -1.0276 -0.0115 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.4303 -1.6061 -1.4323 36 1 1.9756 -0.0519 -2.1071 37 1 3.0774 -1.0197 -1.0985 38 1 2.0656 -0.0238 2.0865 39 1 3.0439 -1.1033 1.0638 40 1 -0.7256 -0.9132 1.3105 41 1 -0.6798 -2.1822 2.5578 42 1 -2.8741 0.2026 4.1709 43 1 0.5852 -2.0776 -0.4414 44 1 0.1627 -3.4389 0.6247 45 1 6.1076 -5.6716 -0.9537 46 1 8.1797 -5.5473 -2.2719 47 1 8.6194 -3.5945 -3.7019 48 1 6.9909 -1.7557 -3.8243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069699729.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:26 Heat of formation + Delta-G solvation = 111.069136 kcal Electronic energy + Delta-G solvation = -31943.815836 eV Core-core repulsion = 27835.979253 eV Total energy + Delta-G solvation = -4107.836583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.24939 -41.13274 -40.27496 -37.66453 -37.22158 -35.56847 -34.83363 -33.82658 -31.96501 -31.66092 -29.71088 -29.33255 -27.96987 -27.49330 -26.11522 -25.44036 -24.08961 -23.08220 -22.83345 -22.02928 -20.08217 -19.01319 -18.70517 -18.44279 -17.87202 -17.09879 -16.99075 -16.66587 -16.40029 -16.17882 -15.92346 -15.43656 -15.12105 -14.83981 -14.78515 -14.60918 -14.33974 -14.17605 -13.80028 -13.45923 -13.25654 -13.09290 -13.01189 -12.90797 -12.80156 -12.75142 -12.67745 -12.59751 -12.41765 -12.33695 -12.16874 -12.03203 -11.90368 -11.81137 -11.65444 -11.39658 -11.27466 -10.98289 -10.86130 -10.53399 -9.94758 -9.63427 -8.73378 -8.15519 -6.20096 -0.69166 0.11973 0.52823 0.93824 1.17429 1.36564 1.41679 1.43571 1.50250 2.41896 2.57368 2.62232 3.17195 3.21181 3.34800 3.60873 3.83094 3.89298 3.91742 3.98467 4.04515 4.17206 4.20417 4.24829 4.32983 4.40869 4.47145 4.52578 4.56301 4.62968 4.75967 4.78625 4.84213 4.87832 4.92964 5.02915 5.08417 5.13214 5.21326 5.22378 5.32553 5.34322 5.41109 5.41487 5.52392 5.65225 5.67901 5.69865 6.04395 6.28505 6.57321 6.92056 7.18699 7.45615 8.95399 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.017010 B = 0.002983 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.741022 B = 9382.716224 C =10054.989922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.162 4.162 5 C 0.069 3.931 6 N -0.538 5.538 7 C 0.163 3.837 8 C -0.515 4.515 9 H 0.063 0.937 10 C 0.014 3.986 11 N -0.926 5.926 12 Si 0.951 3.049 13 H -0.267 1.267 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.116 3.884 17 C 0.194 3.806 18 N -0.308 5.308 19 N -0.298 5.298 20 C 0.186 3.814 21 C -0.040 4.040 22 C -0.068 4.068 23 C -0.108 4.108 24 C -0.070 4.070 25 C -0.113 4.113 26 C -0.035 4.035 27 Cl -0.043 7.043 28 O -0.189 6.189 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.054 0.946 41 H -0.004 1.004 42 H 0.262 0.738 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.143 0.857 46 H 0.173 0.827 47 H 0.179 0.821 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.171 -3.395 -19.550 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.091 4.091 3 C -0.186 4.186 4 C -0.218 4.218 5 C -0.059 4.059 6 N -0.262 5.262 7 C 0.039 3.961 8 C -0.553 4.553 9 H 0.081 0.919 10 C -0.185 4.185 11 N -0.566 5.566 12 Si 0.777 3.223 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.203 1.203 16 C -0.012 4.012 17 C -0.017 4.017 18 N -0.155 5.155 19 N -0.146 5.146 20 C -0.022 4.022 21 C -0.042 4.042 22 C -0.088 4.088 23 C -0.125 4.125 24 C -0.088 4.088 25 C -0.131 4.131 26 C -0.063 4.063 27 Cl -0.013 7.013 28 O -0.068 6.068 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.014 0.986 42 H 0.071 0.929 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.161 0.839 46 H 0.191 0.809 47 H 0.197 0.803 48 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 20.073 -4.670 -18.440 27.655 hybrid contribution -1.147 2.053 0.232 2.363 sum 18.926 -2.617 -18.208 26.392 Atomic orbital electron populations 1.22691 0.95088 1.01651 1.01749 1.21103 0.95519 0.96814 0.95680 1.21739 1.00690 0.94468 1.01688 1.22942 1.02615 0.99510 0.96729 1.22338 0.93996 0.92293 0.97240 1.62181 1.17192 1.20489 1.26384 1.20647 0.85688 0.93991 0.95754 1.21432 0.93308 1.21225 1.19361 0.91943 1.25632 0.94882 0.98969 0.99031 1.70044 0.99490 1.44516 1.42562 0.85711 0.77206 0.79784 0.79584 1.19183 1.21160 1.20290 1.21391 0.85979 0.97329 0.96512 1.28140 0.93758 0.91236 0.88542 1.74351 1.05779 1.14201 1.21144 1.74582 1.06738 1.23728 1.09525 1.25889 0.92402 0.85174 0.98697 1.17351 0.89751 0.97972 0.99170 1.21417 0.92652 0.96373 0.98365 1.21636 0.96052 0.99899 0.94925 1.21882 0.99433 0.91226 0.96289 1.21425 0.91103 1.01608 0.98965 1.21495 0.94525 0.90543 0.99785 1.98441 1.57653 1.48664 1.96579 1.85417 1.26194 1.42509 1.52673 0.91833 0.92764 0.91833 0.92317 0.91773 0.93602 0.92548 0.92189 0.89847 0.90290 0.93737 0.92908 0.98641 0.92891 0.87088 0.87444 0.83890 0.80910 0.80338 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 6.19 71.98 0.45 -5.15 16 2 C -0.09 -2.94 0.77 -52.18 -0.04 -2.98 16 3 C -0.13 -3.79 8.26 71.98 0.59 -3.20 16 4 C -0.16 -4.61 5.28 71.98 0.38 -4.23 16 5 C 0.07 2.70 4.58 86.30 0.39 3.09 16 6 N -0.54 -23.02 4.84 -905.35 -4.38 -27.40 16 7 C 0.16 8.07 4.17 85.56 0.36 8.43 16 8 C -0.52 -27.51 7.53 25.60 0.19 -27.32 16 9 H 0.06 3.32 5.61 -2.91 -0.02 3.30 16 10 C 0.01 0.74 5.46 84.65 0.46 1.21 16 11 N -0.93 -53.34 13.29 21.45 0.28 -53.06 16 12 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 C 0.12 4.25 4.47 85.55 0.38 4.64 16 17 C 0.19 7.05 6.60 88.32 0.58 7.64 16 18 N -0.31 -12.18 12.22 -165.33 -2.02 -14.20 16 19 N -0.30 -10.71 11.92 -166.31 -1.98 -12.70 16 20 C 0.19 5.81 7.89 87.32 0.69 6.50 16 21 C -0.04 -0.93 5.87 -20.08 -0.12 -1.05 16 22 C -0.07 -1.19 9.70 22.52 0.22 -0.97 16 23 C -0.11 -1.00 10.03 22.23 0.22 -0.77 16 24 C -0.07 -0.50 10.04 22.32 0.22 -0.28 16 25 C -0.11 -1.34 9.82 22.26 0.22 -1.12 16 26 C -0.04 -0.69 6.35 22.58 0.14 -0.55 16 27 Cl -0.04 -0.94 22.49 -2.72 -0.06 -1.00 16 28 O -0.19 -6.09 4.57 -8.67 -0.04 -6.13 16 29 H 0.06 2.78 5.74 -2.39 -0.01 2.77 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 2.34 3.34 -2.39 -0.01 2.33 16 32 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 34 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.06 1.65 4.24 -2.38 -0.01 1.64 16 36 H 0.06 1.51 7.99 -2.39 -0.02 1.50 16 37 H 0.08 2.40 2.59 -2.39 -0.01 2.40 16 38 H 0.08 3.42 4.99 -2.39 -0.01 3.41 16 39 H 0.04 1.72 6.81 -2.38 -0.02 1.70 16 40 H 0.05 2.58 3.26 -8.95 -0.03 2.55 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.11 3.68 2.42 -2.39 -0.01 3.68 16 44 H 0.11 3.92 8.07 -2.39 -0.02 3.90 16 45 H 0.14 2.55 7.87 -2.91 -0.02 2.53 16 46 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 47 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 48 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -67.44 369.25 0.19 -67.25 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.00 Total: 17.84 kcal Atomic # 6 Polarization: -21.45 SS G_CDS: 5.35 Total: -16.10 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -8.10 Total: -107.35 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.04 Total: -6.13 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.06 Total: -1.00 kcal Total: -67.44 0.19 -67.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069699729.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.322 kcal (2) G-P(sol) polarization free energy of solvation -67.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds