Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00315 * 2 1 4 4 C 1.52994 * 109.47445 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47132 * 65.00227 * 4 3 2 6 6 C 1.46496 * 119.99756 * 275.00195 * 5 4 3 7 7 C 1.50706 * 109.46877 * 274.99586 * 6 5 4 8 8 H 1.07998 * 120.00131 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00040 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99743 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47071 * 60.00338 * 11 9 7 13 13 H 1.48498 * 109.47181 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47220 * 300.00247 * 11 9 7 15 15 S 1.65595 * 120.00126 * 94.99683 * 5 4 3 16 16 O 1.42101 * 106.40353 * 156.45826 * 15 5 4 17 17 O 1.42103 * 106.40182 * 23.54278 * 15 5 4 18 18 C 1.76200 * 107.21958 * 270.00265 * 15 5 4 19 19 C 1.38282 * 119.93965 * 270.01821 * 18 15 5 20 20 C 1.38150 * 120.07704 * 180.02562 * 19 18 15 21 21 C 1.38707 * 119.95366 * 359.95953 * 20 19 18 22 22 O 1.35930 * 120.05650 * 180.29946 * 21 20 19 23 23 C 1.42905 * 116.99986 * 359.72179 * 22 21 20 24 24 C 1.38815 * 119.88508 * 0.02562 * 21 20 19 25 25 Cl 1.73601 * 120.03662 * 180.02562 * 24 21 20 26 26 C 1.38249 * 119.93997 * 90.00304 * 18 15 5 27 27 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47471 * 300.00190 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.46846 * 59.99495 * 3 2 1 31 31 H 1.08999 * 109.46879 * 300.00185 * 3 2 1 32 32 H 1.08995 * 109.47538 * 305.00202 * 4 3 2 33 33 H 1.09002 * 109.47222 * 184.99437 * 4 3 2 34 34 H 1.09001 * 109.47493 * 34.99819 * 6 5 4 35 35 H 1.08999 * 109.47203 * 154.99795 * 6 5 4 36 36 H 0.96994 * 119.99733 * 179.97438 * 10 9 7 37 37 H 1.07993 * 119.95939 * 0.02562 * 19 18 15 38 38 H 1.07998 * 120.02187 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.46894 * 300.00228 * 23 22 21 40 40 H 1.09001 * 109.46908 * 60.00014 * 23 22 21 41 41 H 1.09002 * 109.46907 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.97937 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.3000 -1.4249 -0.8240 8 1 6.0333 -0.7425 -0.4202 9 6 5.5519 -2.7804 -0.8346 10 7 4.6587 -3.6114 -1.3258 11 14 7.1612 -3.4367 -0.1499 12 1 7.2799 -3.0610 1.2819 13 1 7.1864 -4.9160 -0.2766 14 1 8.2965 -2.8549 -0.9100 15 16 4.4473 1.5121 -2.5244 16 8 5.3032 0.7103 -3.3268 17 8 4.8441 2.7593 -1.9710 18 6 3.0118 1.8325 -3.4946 19 6 2.6694 0.9755 -4.5244 20 6 1.5448 1.2243 -5.2873 21 6 0.7578 2.3346 -5.0192 22 8 -0.3525 2.5781 -5.7646 23 6 -0.6463 1.6521 -6.8126 24 6 1.1030 3.1936 -3.9849 25 17 0.1206 4.5841 -3.6455 26 6 2.2297 2.9401 -3.2248 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0901 34 1 3.1683 -1.3222 -0.8172 35 1 3.9136 -1.1717 -2.4266 36 1 4.8361 -4.5650 -1.3336 37 1 3.2818 0.1107 -4.7326 38 1 1.2784 0.5546 -6.0916 39 1 0.1823 1.6294 -7.5202 40 1 -0.7899 0.6579 -6.3892 41 1 -1.5553 1.9628 -7.3277 42 1 2.4993 3.6080 -2.4201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069739602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = -126.238231 kcal Electronic energy + Delta-G solvation = -29619.298710 eV Core-core repulsion = 25332.656719 eV Total energy + Delta-G solvation = -4286.641991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.079 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.46592 -37.88979 -37.71954 -36.70661 -36.52523 -35.39095 -35.20487 -32.50100 -31.16388 -30.63999 -29.52202 -27.70861 -26.75827 -25.68343 -23.16439 -22.90715 -22.77339 -21.74009 -18.90942 -18.38524 -17.49347 -16.89928 -16.77858 -16.27862 -16.18316 -15.92094 -15.69195 -15.21025 -15.04787 -14.59968 -14.47117 -14.26785 -14.19504 -13.59757 -13.49560 -13.35287 -12.59865 -12.40148 -12.28003 -12.07051 -11.94788 -11.81033 -11.65356 -11.55737 -11.54962 -11.41625 -11.24976 -11.18732 -11.01162 -10.84128 -10.63035 -10.59011 -10.32483 -9.97491 -9.70946 -9.40115 -9.14113 -8.68469 -8.35711 -8.03033 -5.98678 -4.01640 0.63742 0.93517 1.00944 1.96035 2.78657 3.11629 3.38473 3.41545 3.46044 3.68928 4.11576 4.29502 4.40176 4.50709 4.53459 4.79239 4.81730 4.86979 5.04130 5.14572 5.24283 5.30746 5.34800 5.37187 5.44624 5.52094 5.54355 5.59834 5.62085 5.73455 5.87228 5.88932 5.96168 6.29140 6.30842 6.53540 6.84841 7.38800 7.45116 7.49598 7.75384 7.98980 8.29305 8.99865 9.62173 11.09842 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.003596 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.507235 B = 7785.497760 C = 8037.768497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.039 3.961 4 C 0.121 3.879 5 N -0.971 5.971 6 C 0.256 3.744 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.684 3.316 16 O -0.937 6.937 17 O -0.975 6.975 18 C -0.698 4.698 19 C 0.033 3.967 20 C -0.218 4.218 21 C 0.181 3.819 22 O -0.303 6.303 23 C 0.022 3.978 24 C -0.093 4.093 25 Cl -0.056 7.056 26 C 0.022 3.978 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.262 0.738 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 11.672 -6.129 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.040 4.040 4 C -0.006 4.006 5 N -0.811 5.811 6 C 0.135 3.865 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.771 3.229 16 O -0.928 6.928 17 O -0.966 6.966 18 C -0.781 4.781 19 C 0.014 3.986 20 C -0.238 4.238 21 C 0.134 3.866 22 O -0.215 6.215 23 C -0.073 4.073 24 C -0.121 4.121 25 Cl -0.027 7.027 26 C 0.002 3.998 27 H 0.101 0.899 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.430 11.873 -6.329 18.318 hybrid contribution -0.339 -0.408 -0.065 0.534 sum -12.769 11.465 -6.394 18.313 Atomic orbital electron populations 1.22695 0.82436 1.02431 0.99057 1.88127 1.18320 1.26744 1.95095 1.23203 0.95698 0.85502 0.99569 1.21355 0.90745 0.99447 0.89051 1.57369 1.81571 1.19013 1.23116 1.19206 0.98374 0.70968 0.97943 1.21466 1.02633 0.92118 1.40423 0.92260 1.24885 0.96842 0.96744 0.95366 1.69920 1.34525 1.03109 1.45859 0.86625 0.84124 0.77577 0.79504 1.20235 1.21311 1.20070 1.02350 0.73997 0.72998 0.73562 1.93611 1.61289 1.68693 1.69157 1.93498 1.80723 1.44021 1.78309 1.31542 1.25727 1.04819 1.16043 1.20934 0.93016 0.95716 0.88977 1.21344 0.98366 0.99062 1.04991 1.18893 0.86092 0.92287 0.89369 1.86170 1.40074 1.50752 1.44489 1.23211 1.02282 0.93150 0.88637 1.20156 0.97784 0.93723 1.00446 1.98359 1.69644 1.40080 1.94630 1.20633 0.89335 0.93992 0.95850 0.89859 0.94711 0.94826 0.92829 0.94151 0.88190 0.88607 0.92500 0.94892 0.92803 0.82899 0.83700 0.92047 0.91919 0.87720 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.36 -6.20 9.02 -35.23 -0.32 -6.52 16 3 C 0.04 0.57 6.28 37.15 0.23 0.81 16 4 C 0.12 2.02 6.13 -4.04 -0.02 2.00 16 5 N -0.97 -19.55 2.75 -115.66 -0.32 -19.87 16 6 C 0.26 6.28 4.94 -5.19 -0.03 6.25 16 7 C -0.53 -14.48 9.38 -34.44 -0.32 -14.81 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 11 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 S 2.68 51.90 5.64 -107.50 -0.61 51.29 16 16 O -0.94 -21.39 16.25 -57.17 -0.93 -22.32 16 17 O -0.98 -19.04 15.83 -57.17 -0.91 -19.95 16 18 C -0.70 -11.19 5.97 -39.56 -0.24 -11.43 16 19 C 0.03 0.49 9.51 -39.60 -0.38 0.11 16 20 C -0.22 -2.70 9.04 -39.44 -0.36 -3.05 16 21 C 0.18 2.31 6.68 -39.19 -0.26 2.05 16 22 O -0.30 -3.35 9.96 -19.52 -0.19 -3.55 16 23 C 0.02 0.15 9.81 101.05 0.99 1.14 16 24 C -0.09 -1.26 6.33 -39.36 -0.25 -1.51 16 25 Cl -0.06 -0.68 28.50 -51.86 -1.48 -2.16 16 26 C 0.02 0.31 8.15 -39.57 -0.32 -0.01 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.56 6.95 -51.93 -0.36 0.20 16 32 H 0.10 1.74 8.11 -51.93 -0.42 1.32 16 33 H 0.10 1.41 6.91 -51.93 -0.36 1.05 16 34 H 0.06 1.46 6.60 -51.93 -0.34 1.12 16 35 H 0.03 0.85 7.61 -51.93 -0.40 0.45 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.15 2.27 7.61 -52.49 -0.40 1.87 16 38 H 0.15 1.34 6.30 -52.49 -0.33 1.01 16 39 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 40 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.15 1.98 7.61 -52.49 -0.40 1.58 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -33.74 380.67 -8.70 -42.44 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.46 Total: -1.39 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 0.06 Total: -15.25 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.42 Total: -44.95 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -2.35 Total: -52.34 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.61 Total: 51.29 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.74 -8.70 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.803 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds