Wall clock time and date at job start Tue Mar 31 2020 05:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42901 * 114.00315 * 2 1 4 4 C 1.52994 * 109.47445 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47132 * 65.00227 * 4 3 2 6 6 C 1.46496 * 119.99756 * 275.00195 * 5 4 3 7 7 C 1.50706 * 109.46877 * 274.99586 * 6 5 4 8 8 H 1.07998 * 120.00131 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00040 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99743 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00172 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47071 * 60.00338 * 11 9 7 13 13 H 1.48498 * 109.47181 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47220 * 300.00247 * 11 9 7 15 15 S 1.65595 * 120.00126 * 94.99683 * 5 4 3 16 16 O 1.42101 * 106.40353 * 156.45826 * 15 5 4 17 17 O 1.42103 * 106.40182 * 23.54278 * 15 5 4 18 18 C 1.76200 * 107.21958 * 270.00265 * 15 5 4 19 19 C 1.38282 * 119.93965 * 270.01821 * 18 15 5 20 20 C 1.38150 * 120.07704 * 180.02562 * 19 18 15 21 21 C 1.38707 * 119.95366 * 359.95953 * 20 19 18 22 22 O 1.35930 * 120.05650 * 180.29946 * 21 20 19 23 23 C 1.42905 * 116.99986 * 359.72179 * 22 21 20 24 24 C 1.38815 * 119.88508 * 0.02562 * 21 20 19 25 25 Cl 1.73601 * 120.03662 * 180.02562 * 24 21 20 26 26 C 1.38249 * 119.93997 * 90.00304 * 18 15 5 27 27 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47471 * 300.00190 * 1 2 3 29 29 H 1.09000 * 109.47149 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.46846 * 59.99495 * 3 2 1 31 31 H 1.08999 * 109.46879 * 300.00185 * 3 2 1 32 32 H 1.08995 * 109.47538 * 305.00202 * 4 3 2 33 33 H 1.09002 * 109.47222 * 184.99437 * 4 3 2 34 34 H 1.09001 * 109.47493 * 34.99819 * 6 5 4 35 35 H 1.08999 * 109.47203 * 154.99795 * 6 5 4 36 36 H 0.96994 * 119.99733 * 179.97438 * 10 9 7 37 37 H 1.07993 * 119.95939 * 0.02562 * 19 18 15 38 38 H 1.07998 * 120.02187 * 179.97438 * 20 19 18 39 39 H 1.08997 * 109.46894 * 300.00228 * 23 22 21 40 40 H 1.09001 * 109.46908 * 60.00014 * 23 22 21 41 41 H 1.09002 * 109.46907 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.97937 * 0.02562 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0014 -0.8955 -1.3758 7 6 5.3000 -1.4249 -0.8240 8 1 6.0333 -0.7425 -0.4202 9 6 5.5519 -2.7804 -0.8346 10 7 4.6587 -3.6114 -1.3258 11 14 7.1612 -3.4367 -0.1499 12 1 7.2799 -3.0610 1.2819 13 1 7.1864 -4.9160 -0.2766 14 1 8.2965 -2.8549 -0.9100 15 16 4.4473 1.5121 -2.5244 16 8 5.3032 0.7103 -3.3268 17 8 4.8441 2.7593 -1.9710 18 6 3.0118 1.8325 -3.4946 19 6 2.6694 0.9755 -4.5244 20 6 1.5448 1.2243 -5.2873 21 6 0.7578 2.3346 -5.0192 22 8 -0.3525 2.5781 -5.7646 23 6 -0.6463 1.6521 -6.8126 24 6 1.1030 3.1936 -3.9849 25 17 0.1206 4.5841 -3.6455 26 6 2.2297 2.9401 -3.2248 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8508 0.5685 0.8426 33 1 3.9784 2.1765 0.0901 34 1 3.1683 -1.3222 -0.8172 35 1 3.9136 -1.1717 -2.4266 36 1 4.8361 -4.5650 -1.3336 37 1 3.2818 0.1107 -4.7326 38 1 1.2784 0.5546 -6.0916 39 1 0.1823 1.6294 -7.5202 40 1 -0.7899 0.6579 -6.3892 41 1 -1.5553 1.9628 -7.3277 42 1 2.4993 3.6080 -2.4201 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069739602.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:53 Heat of formation + Delta-G solvation = -149.861084 kcal Electronic energy + Delta-G solvation = -29620.323074 eV Core-core repulsion = 25332.656719 eV Total energy + Delta-G solvation = -4287.666355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 363.079 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41962 -39.07336 -38.74574 -38.29296 -37.53881 -36.96994 -36.81514 -34.52274 -32.22106 -31.67562 -31.01439 -28.46372 -28.38394 -26.96093 -24.59357 -24.26875 -23.88232 -23.19427 -20.15006 -19.58146 -18.91947 -18.42905 -18.12367 -17.88380 -17.21389 -17.03035 -16.95083 -16.49968 -16.28596 -16.22138 -15.79055 -15.37255 -15.17720 -15.00916 -14.54342 -14.50015 -14.34439 -13.86009 -13.53953 -13.37718 -13.24213 -13.19105 -13.06324 -12.88939 -12.80361 -12.72006 -12.51120 -12.46410 -12.38992 -12.25493 -12.19362 -11.98693 -11.83835 -11.75294 -11.64511 -10.54938 -10.46842 -10.19893 -9.77685 -9.64490 -8.11075 -6.21345 -0.63048 -0.34335 -0.12918 0.94299 1.43724 1.46822 1.53582 1.91598 1.97895 2.29408 2.47420 2.82029 3.01515 3.20447 3.27708 3.52891 3.61023 3.93197 4.00053 4.17423 4.20463 4.26766 4.34779 4.38992 4.43731 4.46722 4.48112 4.57410 4.62779 4.69610 4.79787 4.86321 4.87048 4.92805 5.10363 5.23942 5.42308 5.62726 5.77699 5.98509 5.98987 6.21526 6.42890 6.86831 7.45781 8.96323 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.012389 B = 0.003596 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.507235 B = 7785.497760 C = 8037.768497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.041 3.959 4 C 0.111 3.889 5 N -0.979 5.979 6 C 0.277 3.723 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.952 3.048 12 H -0.266 1.266 13 H -0.279 1.279 14 H -0.277 1.277 15 S 2.692 3.308 16 O -0.983 6.983 17 O -0.982 6.982 18 C -0.705 4.705 19 C 0.017 3.983 20 C -0.209 4.209 21 C 0.190 3.810 22 O -0.308 6.308 23 C 0.008 3.992 24 C -0.101 4.101 25 Cl -0.043 7.043 26 C 0.020 3.980 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.042 0.958 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.144 0.856 38 H 0.178 0.822 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 12.744 -6.580 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.037 4.037 4 C -0.014 4.014 5 N -0.817 5.817 6 C 0.154 3.846 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.185 4.185 10 N -0.563 5.563 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.204 1.204 14 H -0.202 1.202 15 S 2.785 3.215 16 O -0.973 6.973 17 O -0.973 6.973 18 C -0.793 4.793 19 C -0.002 4.002 20 C -0.228 4.228 21 C 0.142 3.858 22 O -0.220 6.220 23 C -0.085 4.085 24 C -0.129 4.129 25 Cl -0.014 7.014 26 C 0.000 4.000 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.195 0.805 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.147 0.853 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.069 12.956 -6.738 20.278 hybrid contribution -0.005 -0.640 -0.043 0.642 sum -14.074 12.316 -6.781 19.893 Atomic orbital electron populations 1.22837 0.80585 1.02998 1.00480 1.88070 1.20511 1.28179 1.95425 1.23216 0.93808 0.85151 1.01536 1.21608 0.92881 0.99752 0.87166 1.57203 1.82220 1.17295 1.25016 1.18656 0.96486 0.73440 0.96026 1.21845 1.03701 0.92526 1.40419 0.92855 1.25670 1.00011 0.97107 0.95735 1.70019 1.36151 1.03356 1.46798 0.85711 0.80084 0.77261 0.79257 1.19070 1.20408 1.20208 1.01625 0.74450 0.72312 0.73140 1.93549 1.63915 1.69810 1.70064 1.93473 1.81569 1.43625 1.78615 1.30826 1.25141 1.06663 1.16717 1.21000 0.94160 0.95555 0.89523 1.21587 0.96931 0.99335 1.04994 1.18992 0.86288 0.91626 0.88921 1.86187 1.38874 1.51931 1.45031 1.23607 1.03951 0.93044 0.87906 1.20232 0.97687 0.94382 1.00599 1.98362 1.69110 1.39324 1.94583 1.20711 0.89433 0.93472 0.96357 0.89863 0.92433 0.94115 0.89525 0.93239 0.89514 0.86633 0.93965 0.96964 0.92630 0.83805 0.80504 0.90750 0.90981 0.85264 0.81891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.40 -13.58 9.02 -148.98 -1.34 -14.92 16 3 C 0.04 1.16 6.28 71.98 0.45 1.61 16 4 C 0.11 3.75 6.13 86.38 0.53 4.28 16 5 N -0.98 -40.54 2.75 -519.84 -1.43 -41.97 16 6 C 0.28 14.14 4.94 85.64 0.42 14.56 16 7 C -0.55 -30.92 9.38 25.60 0.24 -30.68 16 8 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.01 0.80 5.46 84.65 0.46 1.26 16 10 N -0.92 -54.41 13.29 21.45 0.28 -54.12 16 11 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 S 2.69 106.93 5.64 -56.49 -0.32 106.61 16 16 O -0.98 -46.99 16.25 -128.00 -2.08 -49.07 16 17 O -0.98 -38.63 15.83 -128.00 -2.03 -40.65 16 18 C -0.70 -22.61 5.97 22.28 0.13 -22.48 16 19 C 0.02 0.51 9.51 22.26 0.21 0.72 16 20 C -0.21 -4.78 9.04 22.36 0.20 -4.57 16 21 C 0.19 4.40 6.68 22.52 0.15 4.55 16 22 O -0.31 -5.88 9.96 -92.76 -0.92 -6.80 16 23 C 0.01 0.09 9.81 113.37 1.11 1.20 16 24 C -0.10 -2.53 6.33 22.41 0.14 -2.39 16 25 Cl -0.04 -0.94 28.50 -2.72 -0.08 -1.02 16 26 C 0.02 0.56 8.15 22.28 0.18 0.74 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.30 6.95 -2.39 -0.02 1.28 16 32 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16 33 H 0.12 3.35 6.91 -2.39 -0.02 3.33 16 34 H 0.04 2.27 6.60 -2.39 -0.02 2.25 16 35 H 0.01 0.67 7.61 -2.39 -0.02 0.65 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.14 4.46 7.61 -2.91 -0.02 4.44 16 38 H 0.18 2.76 6.30 -2.91 -0.02 2.74 16 39 H 0.07 0.61 7.67 -2.39 -0.02 0.59 16 40 H 0.07 0.64 7.65 -2.39 -0.02 0.63 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.16 4.02 7.61 -2.91 -0.02 4.00 16 Total: -1.00 -73.99 380.67 0.64 -73.35 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.04 Total: 11.01 kcal Atomic # 6 Polarization: -34.76 SS G_CDS: 5.49 Total: -29.28 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -1.15 Total: -96.10 kcal Atomic # 8 Polarization: -105.07 SS G_CDS: -6.37 Total: -111.44 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 106.93 SS G_CDS: -0.32 Total: 106.61 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -73.99 0.64 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069739602.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.511 kcal (2) G-P(sol) polarization free energy of solvation -73.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds