Wall clock time and date at job start Tue Mar 31 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31557 * 122.22940 * 2 1 4 4 C 1.29992 * 117.14037 * 179.97438 * 3 2 1 5 5 N 1.38724 * 125.36535 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00112 * 179.97438 * 5 4 3 7 7 O 1.21553 * 119.99829 * 0.02562 * 6 5 4 8 8 C 1.47939 * 120.00329 * 179.97438 * 6 5 4 9 9 C 1.39599 * 120.00515 * 179.97438 * 8 6 5 10 10 C 1.37795 * 119.99654 * 179.69764 * 9 8 6 11 11 C 1.39575 * 120.00368 * 0.28918 * 10 9 8 12 12 C 1.48005 * 119.99695 * 179.97438 * 11 10 9 13 13 N 1.34774 * 120.00337 * 179.97438 * 12 11 10 14 14 O 1.21534 * 120.00295 * 359.97438 * 12 11 10 15 15 C 1.39577 * 120.00548 * 359.96685 * 11 10 9 16 16 C 1.37788 * 120.00348 * 0.02562 * 15 11 10 17 17 S 1.76144 * 109.26724 * 0.23541 * 4 3 2 18 18 C 1.34695 * 122.23545 * 179.97438 * 2 1 3 19 19 S 1.76205 * 125.92750 * 0.02663 * 18 2 1 20 20 C 1.76197 * 100.00219 * 179.97438 * 19 18 2 21 21 H 1.08009 * 119.99583 * 0.02562 * 20 19 18 22 22 C 1.38441 * 120.00191 * 179.97438 * 20 19 18 23 23 N 1.31798 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99832 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47045 * 90.00595 * 24 22 20 26 26 H 1.48501 * 109.46984 * 210.00251 * 24 22 20 27 27 H 1.48497 * 109.47419 * 330.00209 * 24 22 20 28 28 H 1.09001 * 109.47179 * 90.02964 * 1 2 3 29 29 H 1.09000 * 109.46669 * 210.02586 * 1 2 3 30 30 H 1.08997 * 109.47265 * 330.02634 * 1 2 3 31 31 H 0.97001 * 119.99986 * 359.97438 * 5 4 3 32 32 H 1.08002 * 120.00314 * 359.97438 * 9 8 6 33 33 H 1.08000 * 119.99783 * 180.30187 * 10 9 8 34 34 H 0.97004 * 119.99715 * 0.02562 * 13 12 11 35 35 H 0.97005 * 120.00696 * 179.97438 * 13 12 11 36 36 H 1.08001 * 119.99871 * 180.02562 * 15 11 10 37 37 H 1.07994 * 120.00326 * 180.02562 * 16 15 11 38 38 H 0.96998 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2086 1.1129 0.0000 4 6 3.5034 0.9976 0.0005 5 7 4.4035 2.0531 0.0001 6 6 5.7289 1.8086 0.0012 7 8 6.1355 0.6631 0.0022 8 6 6.6888 2.9343 0.0002 9 6 8.0616 2.6810 0.0019 10 6 8.9556 3.7296 -0.0053 11 6 8.4886 5.0449 -0.0083 12 6 9.4489 6.1711 -0.0155 13 7 8.9981 7.4412 -0.0189 14 8 10.6441 5.9506 -0.0183 15 6 7.1160 5.2983 -0.0046 16 6 6.2219 4.2500 0.0025 17 16 3.9348 -0.7102 -0.0057 18 6 2.2254 -1.1393 0.0005 19 16 1.5700 -2.7750 0.0006 20 6 3.0669 -3.7045 0.0006 21 1 4.0191 -3.1946 0.0010 22 6 3.0225 -5.0882 0.0012 23 7 1.8605 -5.7102 0.0012 24 14 4.6095 -6.0735 0.0019 25 1 5.0297 -6.3341 1.4021 26 1 4.3906 -7.3650 -0.6977 27 1 5.6698 -5.3049 -0.6982 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.0790 2.9673 -0.0010 32 1 8.4231 1.6633 0.0044 33 1 10.0177 3.5337 -0.0089 34 1 8.0442 7.6173 -0.0162 35 1 9.6275 8.1794 -0.0232 36 1 6.7548 6.3161 -0.0073 37 1 5.1599 4.4460 0.0049 38 1 1.8295 -6.6797 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069740873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:12 Heat of formation + Delta-G solvation = -7.016774 kcal Electronic energy + Delta-G solvation = -25423.973966 eV Core-core repulsion = 21484.147182 eV Total energy + Delta-G solvation = -3939.826784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.050 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.94604 -40.05939 -38.72222 -38.07853 -34.98418 -34.40717 -32.85034 -31.98372 -31.41496 -30.36230 -27.16395 -25.95605 -25.76280 -23.66740 -22.95331 -21.76010 -20.85835 -19.96955 -18.88233 -18.27578 -17.79091 -17.32260 -16.93520 -16.02512 -15.62311 -15.61185 -15.49926 -15.22463 -15.12936 -14.81333 -14.41705 -14.09800 -14.06700 -13.91585 -13.22324 -12.96339 -12.92723 -12.70757 -12.13536 -11.91658 -11.66318 -11.41452 -11.28113 -11.12295 -10.91996 -10.65306 -10.62378 -10.28502 -10.26763 -10.01522 -9.60116 -9.57882 -9.53374 -9.12738 -8.79339 -8.69852 -7.84472 -6.62687 -6.53982 -4.30509 -0.07740 0.80381 1.35555 1.82643 2.05979 2.47561 2.73500 2.74787 2.91591 3.06002 3.09133 3.16172 3.32877 3.36840 3.63397 3.95820 4.09392 4.15093 4.33044 4.47029 4.73137 4.80252 4.84551 5.00404 5.08250 5.18042 5.39483 5.59160 5.73791 5.79459 5.94110 6.06993 6.18722 6.20344 6.25319 6.40630 6.43602 6.74542 6.89014 7.08785 7.30669 7.68668 7.82488 8.01549 8.45922 8.85883 10.42901 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.015439 B = 0.002201 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.163160 B =12716.992879 C =14514.988678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.472 5.472 4 C 0.181 3.819 5 N -0.607 5.607 6 C 0.546 3.454 7 O -0.496 6.496 8 C -0.095 4.095 9 C -0.062 4.062 10 C -0.064 4.064 11 C -0.117 4.117 12 C 0.563 3.437 13 N -0.850 5.850 14 O -0.535 6.535 15 C -0.092 4.092 16 C -0.094 4.094 17 S 0.204 5.796 18 C -0.250 4.250 19 S 0.154 5.846 20 C -0.557 4.557 21 H 0.089 0.911 22 C 0.082 3.918 23 N -0.862 5.862 24 Si 0.925 3.075 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.264 1.264 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.413 0.587 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.407 0.593 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 23.376 0.001 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.193 5.193 4 C -0.189 4.189 5 N -0.256 5.256 6 C 0.332 3.668 7 O -0.370 6.370 8 C -0.098 4.098 9 C -0.081 4.081 10 C -0.083 4.083 11 C -0.121 4.121 12 C 0.348 3.652 13 N -0.414 5.414 14 O -0.412 6.412 15 C -0.111 4.111 16 C -0.112 4.112 17 S 0.448 5.552 18 C -0.487 4.487 19 S 0.405 5.595 20 C -0.706 4.706 21 H 0.107 0.893 22 C -0.129 4.129 23 N -0.495 5.495 24 Si 0.749 3.251 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.188 1.188 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.252 0.748 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.232 0.768 35 H 0.238 0.762 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.950 21.410 -0.011 22.838 hybrid contribution 0.795 0.911 0.008 1.209 sum 8.745 22.321 -0.003 23.972 Atomic orbital electron populations 1.20118 0.87989 1.02144 1.01821 1.19027 0.96702 0.84537 1.12148 1.65795 1.02738 1.32476 1.18320 1.23661 0.89863 0.92769 1.12629 1.42170 1.04253 1.08243 1.70893 1.18349 0.81324 0.89375 0.77785 1.90800 1.77043 1.21605 1.47581 1.19909 0.94025 0.92546 1.03355 1.21358 0.90952 1.00798 0.95004 1.21305 1.01151 0.90439 0.95395 1.20093 0.93382 0.94156 1.04442 1.18302 0.87996 0.83324 0.75531 1.43756 1.12234 1.07543 1.77862 1.90841 1.16253 1.84844 1.49218 1.21175 0.91763 0.99438 0.98706 1.21283 1.00316 0.91347 0.98293 1.85854 1.01718 0.95234 1.72387 1.28811 1.01291 1.06805 1.11819 1.83077 1.11008 0.84335 1.81041 1.23277 0.93591 0.94054 1.59666 0.89290 1.25038 0.98325 0.96682 0.92863 1.70004 1.24421 1.10375 1.44658 0.86024 0.81213 0.78769 0.79049 1.19592 1.20263 1.18844 0.91848 0.91024 0.91913 0.74841 0.83258 0.83590 0.76827 0.76203 0.84775 0.84589 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.04 10.02 36.00 0.36 -0.68 16 2 C 0.02 0.38 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.14 10.55 -9.81 -0.10 -9.24 16 4 C 0.18 3.37 8.39 -87.32 -0.73 2.64 16 5 N -0.61 -8.44 5.34 -12.63 -0.07 -8.50 16 6 C 0.55 7.60 7.74 -12.29 -0.10 7.50 16 7 O -0.50 -8.79 13.84 5.32 0.07 -8.71 16 8 C -0.09 -0.95 5.88 -104.90 -0.62 -1.57 16 9 C -0.06 -0.61 9.58 -39.24 -0.38 -0.98 16 10 C -0.06 -0.56 9.58 -39.24 -0.38 -0.94 16 11 C -0.12 -0.90 5.88 -104.90 -0.62 -1.51 16 12 C 0.56 4.57 8.05 -12.26 -0.10 4.47 16 13 N -0.85 -3.21 8.82 30.57 0.27 -2.94 16 14 O -0.53 -6.53 17.17 5.34 0.09 -6.44 16 15 C -0.09 -0.50 9.53 -39.25 -0.37 -0.88 16 16 C -0.09 -0.64 9.53 -39.23 -0.37 -1.01 16 17 S 0.20 4.41 18.34 -107.50 -1.97 2.44 16 18 C -0.25 -5.66 6.68 29.48 0.20 -5.47 16 19 S 0.15 3.82 20.74 -107.50 -2.23 1.59 16 20 C -0.56 -15.00 9.26 30.81 0.29 -14.71 16 21 H 0.09 2.38 5.97 -52.48 -0.31 2.07 16 22 C 0.08 2.17 5.49 -17.49 -0.10 2.08 16 23 N -0.86 -23.49 13.22 55.47 0.73 -22.76 16 24 Si 0.92 20.53 29.55 -169.99 -5.02 15.51 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.22 7.38 -51.93 -0.38 0.83 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.41 4.16 6.84 -40.82 -0.28 3.88 16 32 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 33 H 0.15 1.24 7.64 -52.49 -0.40 0.83 16 34 H 0.40 0.35 6.85 -40.82 -0.28 0.07 16 35 H 0.41 1.10 8.93 -40.82 -0.36 0.74 16 36 H 0.13 0.23 6.39 -52.49 -0.34 -0.11 16 37 H 0.14 0.60 6.39 -52.49 -0.34 0.26 16 38 H 0.28 7.02 8.32 -40.82 -0.34 6.68 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -34.61 359.85 -9.35 -43.96 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -3.07 Total: 0.92 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.48 Total: -11.24 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.83 Total: -43.44 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: 0.17 Total: -15.16 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 8.23 SS G_CDS: -4.20 Total: 4.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.61 -9.35 -43.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069740873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.943 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds