Wall clock time and date at job start Tue Mar 31 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47000 * 212.37193 * 3 2 1 5 5 C 1.36902 * 119.99922 * 266.72319 * 4 3 2 6 6 H 1.08004 * 119.99493 * 202.40034 * 5 4 3 7 7 C 1.39018 * 120.00115 * 22.40066 * 5 4 3 8 8 N 1.31383 * 119.99996 * 24.10340 * 7 5 4 9 9 Si 1.86800 * 120.00171 * 204.10404 * 7 5 4 10 10 H 1.48504 * 109.47153 * 89.99866 * 9 7 5 11 11 H 1.48500 * 109.47353 * 209.99887 * 9 7 5 12 12 H 1.48500 * 109.46981 * 329.99993 * 9 7 5 13 13 C 1.34773 * 119.99953 * 86.72665 * 4 3 2 14 14 O 1.21618 * 120.00026 * 183.84837 * 13 4 3 15 15 C 1.47555 * 120.00042 * 3.85009 * 13 4 3 16 16 C 1.41572 * 126.44912 * 176.26039 * 15 13 4 17 17 C 1.35342 * 105.55865 * 179.73961 * 16 15 13 18 18 N 1.35879 * 107.13620 * 0.40829 * 17 16 15 19 19 C 1.40110 * 124.95342 * 179.83638 * 18 17 16 20 20 C 1.38893 * 120.05333 * 359.95320 * 19 18 17 21 21 C 1.38084 * 119.97021 * 180.23027 * 20 19 18 22 22 C 1.38391 * 120.06790 * 359.79427 * 21 20 19 23 23 Cl 1.73606 * 119.94739 * 179.97438 * 22 21 20 24 24 C 1.38484 * 120.10299 * 359.97311 * 22 21 20 25 25 Cl 1.73595 * 119.98635 * 180.02562 * 24 22 21 26 26 C 1.38234 * 120.03128 * 0.02562 * 24 22 21 27 27 N 1.28475 * 110.09020 * 359.56948 * 18 17 16 28 28 H 1.09003 * 109.46879 * 92.37399 * 3 2 1 29 29 H 1.09004 * 109.47384 * 332.37851 * 3 2 1 30 30 H 0.97002 * 119.99955 * 179.97438 * 8 7 5 31 31 H 1.08001 * 127.22332 * 0.02562 * 16 15 13 32 32 H 1.07995 * 126.43379 * 180.27541 * 17 16 15 33 33 H 1.07998 * 120.01044 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.96517 * 179.76457 * 21 20 19 35 35 H 1.07998 * 120.03507 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.1674 0.7395 5 6 3.3873 2.3273 0.0732 6 1 4.0640 3.0461 0.5112 7 6 2.8123 2.5798 -1.1670 8 7 1.6791 2.0019 -1.4957 9 14 3.6509 3.7407 -2.3664 10 1 4.5810 2.9715 -3.2316 11 1 2.6259 4.4060 -3.2102 12 1 4.4126 4.7675 -1.6109 13 6 3.2576 1.0989 2.0757 14 8 3.5952 2.0873 2.6988 15 6 3.0251 -0.1752 2.7827 16 6 3.2249 -0.4200 4.1627 17 6 2.8793 -1.7142 4.3556 18 7 2.5033 -2.2124 3.1486 19 6 2.0754 -3.5269 2.9208 20 6 2.0132 -4.4305 3.9738 21 6 1.5958 -5.7270 3.7464 22 6 1.2353 -6.1258 2.4712 23 17 0.7116 -7.7567 2.1888 24 6 1.2917 -5.2260 1.4201 25 17 0.8382 -5.7293 -0.1782 26 6 1.7089 -3.9271 1.6429 27 7 2.5921 -1.3006 2.2479 28 1 2.9713 0.0434 -1.0268 29 1 2.9718 -0.9097 0.4765 30 1 1.2777 2.1784 -2.3609 31 1 3.5747 0.2806 4.9066 32 1 2.9006 -2.2510 5.2925 33 1 2.2950 -4.1203 4.9691 34 1 1.5510 -6.4306 4.5646 35 1 1.7533 -3.2254 0.8232 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069743384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:21 Heat of formation + Delta-G solvation = 103.111944 kcal Electronic energy + Delta-G solvation = -26885.291408 eV Core-core repulsion = 22744.893745 eV Total energy + Delta-G solvation = -4140.397662 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 364.023 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.93281 -40.70651 -40.17563 -37.74525 -37.64835 -37.57680 -36.12991 -34.60917 -33.80936 -32.61736 -31.50806 -30.41910 -29.14787 -27.34354 -25.16098 -24.58287 -23.08327 -21.99797 -20.85947 -19.84898 -19.60495 -18.34986 -17.96222 -17.84974 -17.11376 -16.96194 -16.72924 -16.22264 -15.96490 -15.44358 -15.12854 -15.07414 -14.87938 -14.79041 -14.55029 -14.06093 -13.89050 -13.66872 -13.41997 -13.12175 -13.04369 -12.99720 -12.87774 -12.76517 -12.50306 -12.38575 -12.20158 -12.12174 -11.97341 -11.46039 -11.16896 -10.94228 -10.76082 -10.27190 -10.16556 -9.98961 -9.32402 -8.47939 -6.05071 -0.64397 -0.17559 0.67996 0.70137 0.96174 1.21569 1.38282 1.47234 1.48458 1.59609 1.92640 2.27146 2.27866 2.36532 2.47868 2.97106 3.02886 3.28130 3.49604 3.61771 3.67660 3.85487 3.89700 3.94950 4.20624 4.44582 4.53391 4.58875 4.67699 4.71469 4.77997 4.83390 4.93059 5.19966 5.36642 5.41716 5.90072 6.00991 6.30705 6.80353 7.00747 7.07535 7.23503 7.81927 8.55105 Molecular weight = 364.02amu Principal moments of inertia in cm(-1) A = 0.013585 B = 0.003028 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.619699 B = 9245.932922 C =10909.101616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.271 3.729 3 C 0.218 3.782 4 N -0.431 5.431 5 C -0.347 4.347 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.882 5.882 9 Si 0.995 3.005 10 H -0.257 1.257 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.514 3.486 14 O -0.605 6.605 15 C 0.001 3.999 16 C -0.190 4.190 17 C 0.016 3.984 18 N -0.248 5.248 19 C 0.146 3.854 20 C -0.094 4.094 21 C -0.058 4.058 22 C -0.042 4.042 23 Cl -0.039 7.039 24 C -0.021 4.021 25 Cl -0.046 7.046 26 C -0.113 4.113 27 N -0.293 5.293 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.277 0.723 31 H 0.174 0.826 32 H 0.245 0.755 33 H 0.194 0.806 34 H 0.194 0.806 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -22.689 10.734 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.046 4.046 3 C 0.091 3.909 4 N -0.149 5.149 5 C -0.475 4.475 6 H 0.109 0.891 7 C -0.198 4.198 8 N -0.518 5.518 9 Si 0.818 3.182 10 H -0.181 1.181 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.304 3.696 14 O -0.490 6.490 15 C -0.160 4.160 16 C -0.217 4.217 17 C -0.122 4.122 18 N -0.029 5.029 19 C 0.054 3.946 20 C -0.114 4.114 21 C -0.077 4.077 22 C -0.071 4.071 23 Cl -0.010 7.010 24 C -0.049 4.049 25 Cl -0.017 7.017 26 C -0.134 4.134 27 N -0.126 5.126 28 H 0.128 0.872 29 H 0.158 0.842 30 H 0.087 0.913 31 H 0.192 0.808 32 H 0.262 0.738 33 H 0.211 0.789 34 H 0.211 0.789 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.712 -22.912 9.668 24.878 hybrid contribution 0.489 1.429 -0.754 1.688 sum 1.200 -21.482 8.914 23.290 Atomic orbital electron populations 1.80807 1.14516 1.11967 1.11792 1.29256 0.95385 0.89757 0.90212 1.19204 0.81138 0.90517 1.00004 1.43649 1.54969 1.11563 1.04689 1.19750 1.26857 0.99424 1.01423 0.89067 1.26179 0.94256 0.99584 0.99742 1.69930 1.14410 1.44700 1.22776 0.84900 0.77925 0.77957 0.77391 1.18116 1.21089 1.19364 1.17385 0.84106 0.86503 0.81644 1.90599 1.54490 1.37512 1.66373 1.22251 1.05812 0.92272 0.95617 1.22076 1.07709 0.97342 0.94620 1.23727 1.02379 0.94482 0.91662 1.42999 1.45901 1.07553 1.06468 1.17800 1.00587 0.80989 0.95191 1.21356 0.99436 0.91271 0.99361 1.21300 0.95399 0.96088 0.94926 1.21054 1.04135 0.87431 0.94449 1.98409 1.88558 1.17463 1.96568 1.20532 1.03376 0.93461 0.87563 1.98414 1.90633 1.90802 1.21851 1.20695 1.00441 0.94897 0.97343 1.73613 1.21514 0.98035 1.19469 0.87175 0.84246 0.91307 0.80812 0.73845 0.78941 0.78866 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.51 18.54 20.01 0.37 -26.14 16 2 C 0.27 13.25 12.55 89.44 1.12 14.37 16 3 C 0.22 9.71 4.77 84.57 0.40 10.11 16 4 N -0.43 -21.91 2.58 -649.02 -1.67 -23.58 16 5 C -0.35 -18.79 9.17 84.09 0.77 -18.02 16 6 H 0.09 5.18 7.52 -2.91 -0.02 5.16 16 7 C 0.01 0.33 4.76 84.95 0.40 0.73 16 8 N -0.88 -46.62 9.69 21.68 0.21 -46.41 16 9 Si 1.00 40.53 29.62 68.60 2.03 42.57 16 10 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 11 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 13 C 0.51 25.76 7.59 86.70 0.66 26.42 16 14 O -0.61 -33.97 16.64 -4.09 -0.07 -34.04 16 15 C 0.00 0.03 6.84 42.41 0.29 0.33 16 16 C -0.19 -5.63 10.80 22.42 0.24 -5.39 16 17 C 0.02 0.32 10.78 83.40 0.90 1.22 16 18 N -0.25 -6.37 3.52 -187.29 -0.66 -7.03 16 19 C 0.15 2.97 6.66 38.12 0.25 3.22 16 20 C -0.09 -0.97 9.43 22.39 0.21 -0.76 16 21 C -0.06 -0.54 9.82 22.27 0.22 -0.32 16 22 C -0.04 -0.66 6.32 22.36 0.14 -0.52 16 23 Cl -0.04 -0.58 27.95 -2.72 -0.08 -0.66 16 24 C -0.02 -0.44 6.32 22.33 0.14 -0.30 16 25 Cl -0.05 -1.04 27.95 -2.72 -0.08 -1.12 16 26 C -0.11 -2.71 9.37 22.41 0.21 -2.50 16 27 N -0.29 -10.24 7.13 -48.19 -0.34 -10.58 16 28 H 0.11 4.82 7.04 -2.39 -0.02 4.80 16 29 H 0.14 5.43 5.04 -2.39 -0.01 5.42 16 30 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 31 H 0.17 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.25 1.53 6.96 -2.91 -0.02 1.51 16 33 H 0.19 0.31 6.64 -2.91 -0.02 0.29 16 34 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.14 3.90 7.64 -2.91 -0.02 3.88 16 Total: -1.00 -76.15 345.40 6.88 -69.27 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.19 Total: 9.12 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 5.97 Total: 28.60 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -2.09 Total: -113.74 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.07 Total: -34.04 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.15 Total: -1.78 kcal Total: -76.15 6.88 -69.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069743384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.386 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds