Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47517 * 270.00145 * 3 2 1 5 5 H 1.48504 * 109.47391 * 30.00239 * 3 2 1 6 6 H 1.48496 * 109.46884 * 149.99969 * 3 2 1 7 7 C 1.37879 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99659 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99667 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00168 * 79.49569 * 10 9 7 12 12 C 1.50698 * 109.47654 * 89.99672 * 11 10 9 13 13 C 1.38228 * 119.61460 * 95.01892 * 12 11 10 14 14 C 1.38634 * 119.15531 * 179.70614 * 13 12 11 15 15 C 1.38671 * 118.42356 * 0.51458 * 14 13 12 16 16 C 1.38185 * 119.16129 * 359.50773 * 15 14 13 17 17 N 1.31851 * 119.61795 * 275.00099 * 12 11 10 18 18 C 1.34774 * 119.99888 * 259.49197 * 10 9 7 19 19 O 1.21558 * 120.00183 * 181.71435 * 18 10 9 20 20 C 1.47852 * 120.00065 * 1.70423 * 18 10 9 21 21 C 1.39573 * 120.14190 * 22.83726 * 20 18 10 22 22 C 1.37953 * 119.85317 * 179.78849 * 21 20 18 23 23 C 1.38366 * 120.14483 * 0.48174 * 22 21 20 24 24 C 1.50693 * 119.85487 * 179.76766 * 23 22 21 25 25 F 1.39900 * 109.47214 * 269.97908 * 24 23 22 26 26 F 1.39900 * 109.47506 * 29.97847 * 24 23 22 27 27 F 1.39902 * 109.47254 * 149.98120 * 24 23 22 28 28 C 1.38352 * 120.29008 * 359.74431 * 23 22 21 29 29 C 1.37956 * 120.14877 * 0.02562 * 28 23 22 30 30 H 0.96991 * 119.99978 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47789 * 59.99649 * 9 7 2 32 32 H 1.08999 * 109.47098 * 299.99232 * 9 7 2 33 33 H 1.09003 * 109.46763 * 329.99234 * 11 10 9 34 34 H 1.09000 * 109.46917 * 210.00314 * 11 10 9 35 35 H 1.07992 * 120.42442 * 359.96299 * 13 12 11 36 36 H 1.07996 * 120.78508 * 180.27578 * 14 13 12 37 37 H 1.07994 * 120.42288 * 179.78214 * 15 14 13 38 38 H 1.08000 * 119.61822 * 180.24840 * 16 15 14 39 39 H 1.08004 * 120.07236 * 359.97438 * 21 20 18 40 40 H 1.08004 * 119.92893 * 180.22665 * 22 21 20 41 41 H 1.08000 * 119.92748 * 180.02562 * 28 23 22 42 42 H 1.07999 * 120.08071 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.0265 -3.3427 -1.2477 12 6 5.3527 -3.1401 -1.9340 13 6 6.3715 -4.0529 -1.7346 14 6 7.5856 -3.8605 -2.3756 15 6 7.7339 -2.7467 -3.1881 16 6 6.6707 -1.8770 -3.3391 17 7 5.5278 -2.0945 -2.7180 18 6 4.4248 -3.1398 1.1476 19 8 4.8591 -4.2752 1.1421 20 6 4.3628 -2.3783 2.4134 21 6 3.4704 -1.3136 2.5478 22 6 3.4145 -0.6098 3.7330 23 6 4.2476 -0.9510 4.7836 24 6 4.1847 -0.1745 6.0736 25 9 5.0817 0.8976 6.0167 26 9 2.8869 0.3129 6.2618 27 9 4.5272 -1.0130 7.1398 28 6 5.1378 -2.0023 4.6553 29 6 5.2005 -2.7172 3.4771 30 1 -0.4849 0.8400 0.0004 31 1 3.8746 -0.6807 0.8904 32 1 3.8752 -0.6797 -0.8895 33 1 3.2234 -3.0018 -1.9011 34 1 3.8899 -4.4011 -1.0261 35 1 6.2222 -4.9071 -1.0911 36 1 8.3980 -4.5596 -2.2421 37 1 8.6670 -2.5635 -3.7000 38 1 6.7768 -1.0094 -3.9734 39 1 2.8228 -1.0432 1.7267 40 1 2.7217 0.2119 3.8396 41 1 5.7852 -2.2638 5.4793 42 1 5.8961 -3.5374 3.3780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069744845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = -88.449776 kcal Electronic energy + Delta-G solvation = -32708.035624 eV Core-core repulsion = 27818.571604 eV Total energy + Delta-G solvation = -4889.464019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.11302 -47.62715 -47.57389 -40.45871 -39.77239 -38.07696 -35.69179 -33.25333 -32.38809 -32.21488 -31.34325 -30.77258 -28.44044 -27.16817 -25.64369 -23.42912 -22.95646 -22.78121 -22.25773 -21.58450 -19.30727 -18.44280 -18.31215 -18.26711 -17.35253 -16.89599 -16.68743 -16.09000 -15.85487 -15.42696 -14.83322 -14.63675 -14.62352 -14.57925 -14.39307 -14.21484 -14.03808 -13.85745 -13.77262 -13.73614 -13.48245 -13.37746 -13.22021 -12.98398 -12.89583 -12.50353 -12.40329 -12.00501 -11.71677 -11.52573 -11.40650 -11.10920 -10.96489 -10.45047 -10.12208 -9.86159 -9.76957 -9.52740 -9.30208 -9.01572 -8.97714 -8.89400 -8.61332 -8.02163 -6.42797 -4.46975 0.77587 1.17133 1.39238 1.49875 2.71478 3.02624 3.09087 3.16303 3.19967 3.47096 3.77405 3.91440 4.07601 4.10055 4.10373 4.46327 4.49362 4.84268 4.86712 4.91807 4.95983 5.01699 5.04014 5.14789 5.26645 5.49566 5.59853 5.65925 5.70160 5.87232 5.89372 6.11722 6.12908 6.19515 6.25155 6.25800 6.32385 6.49557 6.62653 6.65775 6.80749 7.01080 7.05667 7.24683 7.83891 8.15676 8.20926 8.56834 8.67112 9.12901 10.67660 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.003761 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.513502 B = 7443.314168 C = 9282.866348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.085 3.915 3 Si 0.859 3.141 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.549 4.549 8 H 0.087 0.913 9 C 0.177 3.823 10 N -0.570 5.570 11 C 0.168 3.832 12 C 0.118 3.882 13 C -0.150 4.150 14 C -0.083 4.083 15 C -0.179 4.179 16 C 0.094 3.906 17 N -0.466 5.466 18 C 0.557 3.443 19 O -0.558 6.558 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.088 4.088 23 C -0.169 4.169 24 C 0.507 3.493 25 F -0.179 7.179 26 F -0.176 7.176 27 F -0.180 7.180 28 C -0.098 4.098 29 C -0.070 4.070 30 H 0.272 0.728 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.217 0.783 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -2.493 2.702 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.122 4.122 3 Si 0.684 3.316 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.105 0.895 9 C 0.057 3.943 10 N -0.298 5.298 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.171 4.171 14 C -0.109 4.109 15 C -0.200 4.200 16 C -0.064 4.064 17 N -0.175 5.175 18 C 0.346 3.654 19 O -0.439 6.439 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.170 4.170 24 C 0.453 3.547 25 F -0.160 7.160 26 F -0.157 7.157 27 F -0.161 7.161 28 C -0.116 4.116 29 C -0.088 4.088 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.233 0.767 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.866 -2.335 2.595 12.369 hybrid contribution 1.117 0.629 0.342 1.327 sum 12.983 -1.706 2.936 13.420 Atomic orbital electron populations 1.69870 1.06197 1.27812 1.46827 1.24900 0.94790 0.98905 0.93579 0.87094 0.80733 0.83964 0.79819 1.19175 1.20319 1.18347 1.21265 0.88734 0.95544 1.53095 0.89547 1.20792 0.95794 0.78299 0.99422 1.47708 1.60624 1.15688 1.05812 1.20231 0.92632 0.97447 0.85287 1.21835 0.96948 0.90023 0.93327 1.22153 0.93629 1.01288 0.99981 1.21566 0.97326 0.96951 0.95040 1.22104 1.00503 0.96420 1.00925 1.22768 0.88474 0.98433 0.96726 1.67581 1.24176 1.19190 1.06601 1.18234 0.77608 0.85914 0.83636 1.90676 1.48069 1.18463 1.86679 1.20211 0.98363 0.97274 0.94707 1.24041 0.97202 0.91411 0.99831 1.21079 0.97323 1.00335 0.91866 1.20199 1.03072 1.00094 0.93685 1.18402 0.73700 0.77741 0.84836 1.93213 1.68370 1.57808 1.96621 1.93199 1.37968 1.88687 1.95830 1.93170 1.92148 1.71364 1.59428 1.20702 0.98009 0.94524 0.98352 1.21153 0.97945 0.98514 0.91235 0.91809 0.92515 0.94170 0.87620 0.88770 0.84250 0.85173 0.85221 0.83009 0.76746 0.84488 0.84774 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.50 13.96 55.43 0.77 -22.72 16 2 C 0.09 2.13 5.31 -17.81 -0.09 2.03 16 3 Si 0.86 18.68 27.33 -169.99 -4.65 14.04 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 7 C -0.55 -13.28 7.86 -34.44 -0.27 -13.55 16 8 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.18 3.76 3.70 -5.20 -0.02 3.74 16 10 N -0.57 -11.20 2.46 -177.55 -0.44 -11.63 16 11 C 0.17 2.97 5.68 -5.20 -0.03 2.94 16 12 C 0.12 1.94 6.36 -82.59 -0.53 1.41 16 13 C -0.15 -2.16 9.72 -39.44 -0.38 -2.54 16 14 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 15 C -0.18 -2.03 10.11 -39.44 -0.40 -2.43 16 16 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 17 N -0.47 -7.81 10.27 -9.47 -0.10 -7.90 16 18 C 0.56 10.90 7.53 -12.33 -0.09 10.81 16 19 O -0.56 -11.22 16.05 5.31 0.09 -11.14 16 20 C -0.10 -1.88 5.62 -104.96 -0.59 -2.47 16 21 C -0.11 -2.05 7.53 -39.19 -0.30 -2.34 16 22 C -0.09 -1.48 9.38 -39.64 -0.37 -1.86 16 23 C -0.17 -2.56 5.46 -104.54 -0.57 -3.13 16 24 C 0.51 7.11 3.36 36.00 0.12 7.23 16 25 F -0.18 -2.51 17.30 2.25 0.04 -2.48 16 26 F -0.18 -2.55 16.45 2.25 0.04 -2.51 16 27 F -0.18 -2.38 16.45 2.25 0.04 -2.34 16 28 C -0.10 -1.37 9.38 -39.64 -0.37 -1.74 16 29 C -0.07 -1.08 9.59 -39.18 -0.38 -1.46 16 30 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.20 3.28 -51.94 -0.17 1.03 16 32 H 0.04 0.88 7.57 -51.93 -0.39 0.49 16 33 H 0.11 1.93 8.05 -51.93 -0.42 1.51 16 34 H 0.09 1.56 7.34 -51.93 -0.38 1.18 16 35 H 0.14 1.96 7.94 -52.49 -0.42 1.54 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 39 H 0.22 4.56 2.37 -52.48 -0.12 4.44 16 40 H 0.14 2.18 7.59 -52.48 -0.40 1.78 16 41 H 0.13 1.51 7.59 -52.49 -0.40 1.12 16 42 H 0.14 1.95 7.82 -52.49 -0.41 1.54 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -27.74 369.09 -7.48 -35.22 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -3.97 Total: 9.58 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.86 Total: -3.67 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.24 Total: -42.26 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.11 Total: -7.33 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.65 Total: 14.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.74 -7.48 -35.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.227 kcal (2) G-P(sol) polarization free energy of solvation -27.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds