Wall clock time and date at job start Tue Mar 31 2020 06:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99737 * 2 1 4 4 H 1.48501 * 109.47517 * 270.00145 * 3 2 1 5 5 H 1.48504 * 109.47391 * 30.00239 * 3 2 1 6 6 H 1.48496 * 109.46884 * 149.99969 * 3 2 1 7 7 C 1.37879 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99659 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99667 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00168 * 79.49569 * 10 9 7 12 12 C 1.50698 * 109.47654 * 89.99672 * 11 10 9 13 13 C 1.38228 * 119.61460 * 95.01892 * 12 11 10 14 14 C 1.38634 * 119.15531 * 179.70614 * 13 12 11 15 15 C 1.38671 * 118.42356 * 0.51458 * 14 13 12 16 16 C 1.38185 * 119.16129 * 359.50773 * 15 14 13 17 17 N 1.31851 * 119.61795 * 275.00099 * 12 11 10 18 18 C 1.34774 * 119.99888 * 259.49197 * 10 9 7 19 19 O 1.21558 * 120.00183 * 181.71435 * 18 10 9 20 20 C 1.47852 * 120.00065 * 1.70423 * 18 10 9 21 21 C 1.39573 * 120.14190 * 22.83726 * 20 18 10 22 22 C 1.37953 * 119.85317 * 179.78849 * 21 20 18 23 23 C 1.38366 * 120.14483 * 0.48174 * 22 21 20 24 24 C 1.50693 * 119.85487 * 179.76766 * 23 22 21 25 25 F 1.39900 * 109.47214 * 269.97908 * 24 23 22 26 26 F 1.39900 * 109.47506 * 29.97847 * 24 23 22 27 27 F 1.39902 * 109.47254 * 149.98120 * 24 23 22 28 28 C 1.38352 * 120.29008 * 359.74431 * 23 22 21 29 29 C 1.37956 * 120.14877 * 0.02562 * 28 23 22 30 30 H 0.96991 * 119.99978 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47789 * 59.99649 * 9 7 2 32 32 H 1.08999 * 109.47098 * 299.99232 * 9 7 2 33 33 H 1.09003 * 109.46763 * 329.99234 * 11 10 9 34 34 H 1.09000 * 109.46917 * 210.00314 * 11 10 9 35 35 H 1.07992 * 120.42442 * 359.96299 * 13 12 11 36 36 H 1.07996 * 120.78508 * 180.27578 * 14 13 12 37 37 H 1.07994 * 120.42288 * 179.78214 * 15 14 13 38 38 H 1.08000 * 119.61822 * 180.24840 * 16 15 14 39 39 H 1.08004 * 120.07236 * 359.97438 * 21 20 18 40 40 H 1.08004 * 119.92893 * 180.22665 * 22 21 20 41 41 H 1.08000 * 119.92748 * 180.02562 * 28 23 22 42 42 H 1.07999 * 120.08071 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0001 11 6 4.0265 -3.3427 -1.2477 12 6 5.3527 -3.1401 -1.9340 13 6 6.3715 -4.0529 -1.7346 14 6 7.5856 -3.8605 -2.3756 15 6 7.7339 -2.7467 -3.1881 16 6 6.6707 -1.8770 -3.3391 17 7 5.5278 -2.0945 -2.7180 18 6 4.4248 -3.1398 1.1476 19 8 4.8591 -4.2752 1.1421 20 6 4.3628 -2.3783 2.4134 21 6 3.4704 -1.3136 2.5478 22 6 3.4145 -0.6098 3.7330 23 6 4.2476 -0.9510 4.7836 24 6 4.1847 -0.1745 6.0736 25 9 5.0817 0.8976 6.0167 26 9 2.8869 0.3129 6.2618 27 9 4.5272 -1.0130 7.1398 28 6 5.1378 -2.0023 4.6553 29 6 5.2005 -2.7172 3.4771 30 1 -0.4849 0.8400 0.0004 31 1 3.8746 -0.6807 0.8904 32 1 3.8752 -0.6797 -0.8895 33 1 3.2234 -3.0018 -1.9011 34 1 3.8899 -4.4011 -1.0261 35 1 6.2222 -4.9071 -1.0911 36 1 8.3980 -4.5596 -2.2421 37 1 8.6670 -2.5635 -3.7000 38 1 6.7768 -1.0094 -3.9734 39 1 2.8228 -1.0432 1.7267 40 1 2.7217 0.2119 3.8396 41 1 5.7852 -2.2638 5.4793 42 1 5.8961 -3.5374 3.3780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069744845.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:03 Heat of formation + Delta-G solvation = -102.204460 kcal Electronic energy + Delta-G solvation = -32708.632072 eV Core-core repulsion = 27818.571604 eV Total energy + Delta-G solvation = -4890.060467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.22387 -48.72947 -48.68459 -41.82598 -40.92357 -39.44152 -37.28295 -34.89292 -33.82765 -33.31572 -32.60545 -32.02973 -30.14142 -28.46474 -26.90125 -24.76589 -24.35019 -24.01506 -23.60205 -22.80246 -20.74062 -19.55261 -19.48993 -19.42082 -19.19893 -18.34086 -17.84406 -17.47532 -17.03907 -16.59948 -16.26359 -16.12386 -15.94578 -15.89272 -15.60946 -15.42381 -15.26018 -15.13498 -14.97005 -14.83897 -14.75136 -14.61138 -14.55115 -14.29465 -14.06376 -14.00831 -13.70417 -13.37908 -13.20886 -12.85323 -12.70001 -12.64796 -12.50713 -12.09807 -11.78465 -11.62997 -11.02306 -10.88664 -10.80171 -10.42881 -10.32047 -10.04382 -9.94318 -9.57738 -8.38725 -6.46042 -0.54595 0.11889 0.21545 0.39193 1.34035 1.38031 1.44450 1.56391 1.59807 2.07310 2.26105 2.53256 2.62514 2.92270 2.95632 2.97843 3.32733 3.36000 3.51093 3.77861 3.81872 3.86070 4.03389 4.18054 4.21553 4.25861 4.30588 4.42681 4.57482 4.59791 4.61345 4.76906 4.85804 4.88212 4.89918 4.98419 5.15786 5.23266 5.25464 5.28672 5.34043 5.50267 5.68790 5.81189 6.05776 6.46012 6.61649 7.03665 7.10284 7.18799 8.75701 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.003761 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.513502 B = 7443.314168 C = 9282.866348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.041 3.959 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.240 1.240 7 C -0.539 4.539 8 H 0.045 0.955 9 C 0.193 3.807 10 N -0.575 5.575 11 C 0.168 3.832 12 C 0.094 3.906 13 C -0.159 4.159 14 C -0.078 4.078 15 C -0.163 4.163 16 C 0.080 3.920 17 N -0.505 5.505 18 C 0.552 3.448 19 O -0.568 6.568 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.166 4.166 24 C 0.516 3.484 25 F -0.176 7.176 26 F -0.179 7.179 27 F -0.171 7.171 28 C -0.079 4.079 29 C -0.064 4.064 30 H 0.273 0.727 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.191 0.809 40 H 0.141 0.859 41 H 0.172 0.828 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.347 -2.112 3.733 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.162 4.162 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.163 1.163 7 C -0.577 4.577 8 H 0.063 0.937 9 C 0.071 3.929 10 N -0.303 5.303 11 C 0.045 3.955 12 C -0.044 4.044 13 C -0.179 4.179 14 C -0.104 4.104 15 C -0.182 4.182 16 C -0.077 4.077 17 N -0.215 5.215 18 C 0.342 3.658 19 O -0.450 6.450 20 C -0.123 4.123 21 C -0.147 4.147 22 C -0.112 4.112 23 C -0.168 4.168 24 C 0.462 3.538 25 F -0.158 7.158 26 F -0.161 7.161 27 F -0.152 7.152 28 C -0.097 4.097 29 C -0.082 4.082 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.154 0.846 36 H 0.183 0.817 37 H 0.189 0.811 38 H 0.193 0.807 39 H 0.207 0.793 40 H 0.159 0.841 41 H 0.189 0.811 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.678 -1.972 3.627 16.213 hybrid contribution -0.006 0.401 0.031 0.402 sum 15.672 -1.571 3.659 16.170 Atomic orbital electron populations 1.69994 1.07929 1.28716 1.49152 1.25572 0.95294 1.02113 0.93203 0.86214 0.80386 0.79888 0.79936 1.19134 1.19858 1.16279 1.21256 0.90348 0.93894 1.52198 0.93697 1.20518 0.93489 0.79502 0.99351 1.47733 1.60601 1.15225 1.06762 1.20194 0.93685 0.97093 0.84573 1.21507 0.96666 0.91461 0.94757 1.22173 0.94369 1.00788 1.00594 1.21991 0.96954 0.97610 0.93818 1.22534 1.01213 0.94911 0.99562 1.23292 0.88119 0.99745 0.96587 1.67477 1.26404 1.19872 1.07766 1.18528 0.77287 0.85987 0.84006 1.90648 1.48706 1.18747 1.86897 1.20253 0.99601 0.97491 0.95005 1.23639 0.98032 0.92893 1.00184 1.21095 0.97942 1.00369 0.91775 1.20331 1.02511 1.00303 0.93657 1.18142 0.73605 0.77652 0.84432 1.93223 1.68243 1.57690 1.96603 1.93200 1.38325 1.88724 1.95810 1.93192 1.92043 1.71097 1.58897 1.21091 0.97165 0.92882 0.98553 1.21366 0.97292 0.98846 0.90718 0.91728 0.91431 0.94839 0.89667 0.88602 0.84597 0.81662 0.81083 0.80700 0.79312 0.84096 0.81064 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 13.96 21.45 0.30 -51.75 16 2 C 0.04 2.11 5.31 84.65 0.45 2.56 16 3 Si 0.91 39.11 27.33 68.60 1.87 40.98 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 7 C -0.54 -27.67 7.86 25.60 0.20 -27.47 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 9 C 0.19 8.49 3.70 85.63 0.32 8.80 16 10 N -0.58 -23.61 2.46 -833.93 -2.05 -25.66 16 11 C 0.17 6.33 5.68 85.63 0.49 6.82 16 12 C 0.09 3.16 6.36 42.55 0.27 3.43 16 13 C -0.16 -4.45 9.72 22.36 0.22 -4.23 16 14 C -0.08 -1.61 10.18 22.47 0.23 -1.39 16 15 C -0.16 -3.09 10.11 22.36 0.23 -2.87 16 16 C 0.08 1.98 11.18 84.67 0.95 2.93 16 17 N -0.51 -17.00 10.27 -183.88 -1.89 -18.89 16 18 C 0.55 22.03 7.53 86.79 0.65 22.68 16 19 O -0.57 -23.05 16.05 -3.90 -0.06 -23.11 16 20 C -0.12 -4.38 5.62 -20.09 -0.11 -4.49 16 21 C -0.13 -4.97 7.53 22.52 0.17 -4.80 16 22 C -0.09 -3.08 9.38 22.23 0.21 -2.88 16 23 C -0.17 -4.63 5.46 -19.81 -0.11 -4.74 16 24 C 0.52 13.02 3.36 71.23 0.24 13.25 16 25 F -0.18 -4.44 17.30 44.97 0.78 -3.66 16 26 F -0.18 -4.86 16.45 44.97 0.74 -4.12 16 27 F -0.17 -3.94 16.45 44.97 0.74 -3.20 16 28 C -0.08 -1.95 9.38 22.23 0.21 -1.74 16 29 C -0.06 -1.83 9.59 22.53 0.22 -1.61 16 30 H 0.27 14.45 8.31 -92.72 -0.77 13.68 16 31 H 0.07 2.90 3.28 -2.40 -0.01 2.90 16 32 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 33 H 0.08 3.44 8.05 -2.39 -0.02 3.42 16 34 H 0.10 3.44 7.34 -2.39 -0.02 3.42 16 35 H 0.14 3.80 7.94 -2.91 -0.02 3.78 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.19 8.31 2.37 -2.91 -0.01 8.31 16 40 H 0.14 4.42 7.59 -2.91 -0.02 4.40 16 41 H 0.17 2.99 7.59 -2.91 -0.02 2.97 16 42 H 0.16 3.94 7.82 -2.91 -0.02 3.92 16 Total: -1.00 -63.38 369.09 6.29 -57.09 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.04 Total: 28.05 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 4.82 Total: 4.27 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -3.64 Total: -96.30 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 2.26 Total: -10.98 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.87 Total: 40.98 kcal Total: -63.38 6.29 -57.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744845.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.112 kcal (2) G-P(sol) polarization free energy of solvation -63.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds