Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47098 * 275.82477 * 3 2 1 5 5 H 1.48494 * 109.47460 * 35.82606 * 3 2 1 6 6 H 1.48504 * 109.47227 * 155.82831 * 3 2 1 7 7 C 1.39080 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00292 * 344.36084 * 7 2 1 9 9 N 1.37101 * 119.99758 * 164.35296 * 7 2 1 10 10 C 1.36238 * 119.71460 * 135.95395 * 9 7 2 11 11 C 1.50703 * 118.34688 * 359.95663 * 10 9 7 12 12 N 1.46898 * 109.47171 * 173.58106 * 11 10 9 13 13 C 1.46770 * 111.00312 * 170.34841 * 12 11 10 14 14 C 1.52986 * 108.52206 * 52.43667 * 13 12 11 15 15 C 1.50425 * 109.82423 * 50.11177 * 14 13 12 16 16 C 1.38777 * 119.46715 * 163.44014 * 15 14 13 17 17 N 1.32297 * 119.07732 * 179.64223 * 16 15 14 18 18 C 1.31808 * 120.69155 * 0.02562 * 17 16 15 19 19 N 1.31689 * 121.78132 * 0.10399 * 18 17 16 20 20 C 1.32702 * 120.89004 * 359.94744 * 19 18 17 21 21 C 1.46713 * 110.99644 * 293.79837 * 12 11 10 22 22 N 1.29821 * 123.30419 * 180.23434 * 10 9 7 23 23 C 1.35638 * 121.62378 * 359.48662 * 22 10 9 24 24 C 1.39635 * 121.61528 * 180.23677 * 23 22 10 25 25 C 1.37712 * 119.68865 * 180.26644 * 24 23 22 26 26 C 1.38874 * 120.82780 * 359.97438 * 25 24 23 27 27 C 1.37792 * 120.57107 * 359.97438 * 26 25 24 28 28 C 1.39370 * 119.52016 * 0.02562 * 27 26 25 29 29 C 1.35342 * 119.72064 * 315.93295 * 9 7 2 30 30 O 1.21721 * 121.28485 * 359.97438 * 29 9 7 31 31 H 0.96998 * 120.00057 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47174 * 53.58096 * 11 10 9 33 33 H 1.08996 * 109.46977 * 293.57659 * 11 10 9 34 34 H 1.09000 * 109.67881 * 292.71079 * 13 12 11 35 35 H 1.09003 * 109.62402 * 172.13371 * 13 12 11 36 36 H 1.09000 * 109.41419 * 289.99699 * 14 13 12 37 37 H 1.09003 * 109.35351 * 170.17802 * 14 13 12 38 38 H 1.08002 * 120.46384 * 359.62405 * 16 15 14 39 39 H 1.07997 * 119.11052 * 180.02562 * 18 17 16 40 40 H 1.09006 * 109.32014 * 168.65922 * 21 12 11 41 41 H 1.08996 * 109.32148 * 49.03234 * 21 12 11 42 42 H 1.07996 * 120.15750 * 0.25776 * 24 23 22 43 43 H 1.08002 * 119.58219 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.71427 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.23811 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6176 0.0000 4 1 2.3710 2.1174 -1.3929 5 1 1.5111 2.6140 0.8194 6 1 3.6002 1.4076 0.5733 7 6 2.0079 -1.2045 0.0005 8 1 1.4979 -2.1224 0.2531 9 7 3.3408 -1.2266 -0.3197 10 6 4.2031 -1.9688 0.4297 11 6 3.6506 -2.7455 1.5970 12 7 4.7088 -3.5889 2.1689 13 6 4.2779 -4.1844 3.4392 14 6 2.9357 -4.8843 3.2174 15 6 3.0232 -5.7867 2.0171 16 6 2.0603 -6.7683 1.8294 17 7 2.1407 -7.5530 0.7673 18 6 3.1199 -7.4089 -0.1031 19 7 4.0509 -6.4896 0.0463 20 6 4.0355 -5.6672 1.0876 21 6 5.1187 -4.6321 1.2222 22 7 5.4776 -2.0365 0.1921 23 6 6.0444 -1.3684 -0.8434 24 6 7.4145 -1.4452 -1.1018 25 6 7.9491 -0.7459 -2.1609 26 6 7.1423 0.0358 -2.9773 27 6 5.7875 0.1268 -2.7435 28 6 5.2262 -0.5729 -1.6768 29 6 3.7886 -0.5114 -1.3778 30 8 3.0297 0.1555 -2.0568 31 1 -0.4850 0.8400 -0.0004 32 1 2.8279 -3.3750 1.2579 33 1 3.2887 -2.0522 2.3561 34 1 4.1635 -3.4032 4.1907 35 1 5.0188 -4.9110 3.7729 36 1 2.1600 -4.1364 3.0527 37 1 2.6870 -5.4762 4.0983 38 1 1.2567 -6.8901 2.5406 39 1 3.1606 -8.0633 -0.9613 40 1 6.0298 -5.1092 1.5836 41 1 5.3099 -4.1807 0.2487 42 1 8.0519 -2.0500 -0.4740 43 1 9.0091 -0.8062 -2.3589 44 1 7.5805 0.5764 -3.8033 45 1 5.1651 0.7367 -3.3816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069877057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = 95.753455 kcal Electronic energy + Delta-G solvation = -33287.585805 eV Core-core repulsion = 29077.977590 eV Total energy + Delta-G solvation = -4209.608214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54141 -40.87172 -38.54955 -37.90390 -36.56756 -34.09846 -33.93121 -32.72992 -32.29084 -30.70293 -30.34490 -29.71530 -27.60266 -25.94836 -25.33675 -24.19447 -23.21740 -23.05907 -22.26730 -21.29371 -19.82561 -18.94856 -18.09404 -17.69925 -17.54870 -16.82213 -16.17076 -15.58189 -15.44207 -15.35840 -15.03598 -14.61285 -14.43303 -14.29591 -14.04486 -13.91409 -13.66804 -13.50240 -13.29367 -13.13719 -12.96271 -12.76377 -12.65580 -12.44857 -12.18693 -11.91207 -11.59544 -11.42591 -11.38240 -11.21140 -10.90705 -10.72279 -10.60094 -10.39536 -10.31848 -9.49651 -9.37247 -9.24175 -9.12097 -9.03033 -8.87618 -8.55669 -8.25661 -7.31834 -6.79210 -4.68130 0.88007 1.04607 1.21961 1.37194 2.86046 3.08090 3.17965 3.30963 3.48633 3.56376 3.73518 3.99127 4.08020 4.12665 4.18470 4.45907 4.52877 4.59215 4.65659 4.71708 4.83507 5.00691 5.07953 5.13247 5.23617 5.34120 5.36481 5.45838 5.54507 5.56837 5.64615 5.69095 5.79215 5.84178 5.87528 5.90625 5.94349 6.11066 6.24323 6.40871 6.45145 6.58888 6.80578 6.83448 6.86283 7.02153 7.11438 7.16639 7.31294 7.35616 7.84392 8.08816 8.17793 8.57529 8.85690 9.00697 10.20727 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.004542 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.534135 B = 6163.234806 C = 7782.782006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.104 3.896 3 Si 0.906 3.094 4 H -0.248 1.248 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.380 4.380 8 H 0.116 0.884 9 N -0.370 5.370 10 C 0.367 3.633 11 C 0.117 3.883 12 N -0.499 5.499 13 C 0.052 3.948 14 C -0.116 4.116 15 C -0.186 4.186 16 C 0.150 3.850 17 N -0.525 5.525 18 C 0.287 3.713 19 N -0.513 5.513 20 C 0.149 3.851 21 C 0.101 3.899 22 N -0.533 5.533 23 C 0.167 3.833 24 C -0.124 4.124 25 C -0.086 4.086 26 C -0.168 4.168 27 C -0.041 4.041 28 C -0.212 4.212 29 C 0.494 3.506 30 O -0.511 6.511 31 H 0.285 0.715 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.193 0.807 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.411 -8.666 6.227 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.112 4.112 3 Si 0.734 3.266 4 H -0.173 1.173 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.506 4.506 8 H 0.134 0.866 9 N -0.075 5.075 10 C 0.104 3.896 11 C -0.012 4.012 12 N -0.219 5.219 13 C -0.076 4.076 14 C -0.156 4.156 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.239 5.239 18 C -0.002 4.002 19 N -0.227 5.227 20 C 0.002 3.998 21 C -0.029 4.029 22 N -0.259 5.259 23 C 0.052 3.948 24 C -0.143 4.143 25 C -0.106 4.106 26 C -0.187 4.187 27 C -0.061 4.061 28 C -0.219 4.219 29 C 0.292 3.708 30 O -0.390 6.390 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.183 0.817 39 H 0.210 0.790 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.706 -8.837 5.486 14.227 hybrid contribution -1.233 1.169 -0.194 1.710 sum 8.473 -7.668 5.293 12.594 Atomic orbital electron populations 1.69604 1.06836 1.29719 1.39387 1.25321 0.95192 0.99852 0.90849 0.86333 0.79324 0.81532 0.79362 1.17288 1.22106 1.19971 1.19236 0.81171 0.97345 1.52844 0.86619 1.42446 1.09600 1.35013 1.20397 1.22751 0.85450 0.91284 0.90097 1.20918 0.91551 0.95235 0.93542 1.62194 1.37750 1.18795 1.03199 1.22271 0.94171 0.98652 0.92494 1.21122 1.01251 0.98340 0.94887 1.21170 0.97911 1.00180 0.99748 1.23164 0.95802 0.88972 0.93713 1.68408 1.24388 1.27134 1.03923 1.24901 0.85518 0.93078 0.96657 1.68405 1.27292 1.05420 1.21570 1.22582 0.95103 0.93938 0.88150 1.21263 0.93535 0.87858 1.00200 1.68499 1.07932 1.28816 1.20672 1.18861 0.93893 0.91731 0.90359 1.20657 0.92665 1.02058 0.98953 1.21057 0.99337 0.95746 0.94427 1.20906 0.93392 1.02828 1.01582 1.20930 0.94825 0.95547 0.94761 1.20740 0.93405 1.05852 1.01949 1.18634 0.88272 0.83101 0.80825 1.90673 1.58220 1.41015 1.49066 0.90413 0.91602 0.86960 0.89005 0.89989 0.89022 0.89541 0.81670 0.79036 0.88012 0.86195 0.85171 0.86083 0.86228 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.54 13.95 55.50 0.77 -21.77 16 2 C 0.10 2.79 4.96 -17.49 -0.09 2.70 16 3 Si 0.91 22.84 24.56 -169.99 -4.18 18.66 16 4 H -0.25 -6.60 6.36 56.52 0.36 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.99 7.08 56.52 0.40 -6.59 16 7 C -0.38 -9.79 8.68 -14.88 -0.13 -9.92 16 8 H 0.12 3.00 7.15 -52.49 -0.38 2.63 16 9 N -0.37 -8.95 2.31 -59.56 -0.14 -9.09 16 10 C 0.37 7.58 6.95 -154.87 -1.08 6.50 16 11 C 0.12 1.94 3.21 -4.98 -0.02 1.93 16 12 N -0.50 -6.83 4.59 -237.96 -1.09 -7.92 16 13 C 0.05 0.52 6.02 -3.90 -0.02 0.50 16 14 C -0.12 -1.14 5.21 -28.02 -0.15 -1.29 16 15 C -0.19 -2.33 5.04 -104.66 -0.53 -2.86 16 16 C 0.15 1.84 10.98 -17.15 -0.19 1.66 16 17 N -0.52 -7.26 10.44 -14.56 -0.15 -7.41 16 18 C 0.29 3.92 12.28 -92.23 -1.13 2.79 16 19 N -0.51 -7.81 10.35 -10.98 -0.11 -7.93 16 20 C 0.15 2.15 6.10 -82.45 -0.50 1.64 16 21 C 0.10 1.42 5.41 -5.21 -0.03 1.39 16 22 N -0.53 -10.47 7.57 -8.10 -0.06 -10.54 16 23 C 0.17 3.33 6.63 -84.49 -0.56 2.77 16 24 C -0.12 -2.00 10.03 -39.25 -0.39 -2.40 16 25 C -0.09 -1.22 10.00 -39.54 -0.40 -1.62 16 26 C -0.17 -2.57 10.02 -39.51 -0.40 -2.96 16 27 C -0.04 -0.78 9.68 -39.32 -0.38 -1.16 16 28 C -0.21 -4.66 5.89 -104.77 -0.62 -5.28 16 29 C 0.49 12.51 5.77 -12.47 -0.07 12.43 16 30 O -0.51 -14.20 12.22 5.17 0.06 -14.13 16 31 H 0.29 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.15 5.04 -51.93 -0.26 0.89 16 33 H 0.11 1.80 8.08 -51.93 -0.42 1.38 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.09 0.98 7.07 -51.93 -0.37 0.61 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.12 2.03 5.85 -51.93 -0.30 1.73 16 42 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 45 H 0.13 2.37 7.83 -52.49 -0.41 1.96 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -32.21 361.50 -11.24 -43.45 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.12 Total: 4.40 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -6.67 Total: 6.84 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.78 Total: -64.66 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.06 Total: -14.13 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.18 Total: 18.66 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.21 -11.24 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069877057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.199 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds