Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 110.54427 * 2 1 4 4 O 1.42103 * 110.54205 * 223.24936 * 2 1 3 5 5 C 1.76203 * 104.45196 * 111.62811 * 2 1 3 6 6 C 1.38381 * 119.92531 * 270.02128 * 5 2 1 7 7 C 1.38334 * 120.29298 * 179.97438 * 6 5 2 8 8 C 1.37977 * 120.14430 * 359.72139 * 7 6 5 9 9 C 1.39561 * 119.85002 * 0.53341 * 8 7 6 10 10 C 1.47850 * 120.13976 * 179.74350 * 9 8 7 11 11 O 1.21556 * 119.99422 * 150.48497 * 10 9 8 12 12 N 1.34772 * 120.00521 * 330.48753 * 10 9 8 13 13 C 1.46500 * 119.99546 * 6.02280 * 12 10 9 14 14 C 1.50700 * 109.46981 * 97.95362 * 13 12 10 15 15 H 1.08003 * 120.00041 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00253 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99909 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47277 * 60.00420 * 18 16 14 20 20 H 1.48501 * 109.46951 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46999 * 300.00058 * 18 16 14 22 22 C 1.46499 * 120.00257 * 186.02906 * 12 10 9 23 23 C 1.50704 * 109.46857 * 89.99593 * 22 12 10 24 24 C 1.34508 * 125.78757 * 89.72152 * 23 22 12 25 25 C 1.41390 * 106.83870 * 179.88532 * 24 23 22 26 26 C 1.34505 * 106.84075 * 0.36963 * 25 24 23 27 27 O 1.34300 * 125.78803 * 270.01832 * 23 22 12 28 28 C 1.37929 * 119.93074 * 89.99838 * 5 2 1 29 29 H 1.09005 * 109.47100 * 308.37304 * 1 2 3 30 30 H 1.08998 * 109.47394 * 68.37199 * 1 2 3 31 31 H 1.09005 * 109.47178 * 188.37971 * 1 2 3 32 32 H 1.08001 * 119.85278 * 359.97438 * 6 5 2 33 33 H 1.07998 * 119.92714 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.07521 * 180.28245 * 8 7 6 35 35 H 1.09005 * 109.47266 * 217.95527 * 13 12 10 36 36 H 1.08996 * 109.47884 * 337.95462 * 13 12 10 37 37 H 0.96997 * 120.00400 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.46711 * 209.99221 * 22 12 10 39 39 H 1.09001 * 109.46869 * 329.99603 * 22 12 10 40 40 H 1.08000 * 126.58496 * 0.02562 * 24 23 22 41 41 H 1.07997 * 126.57500 * 180.16533 * 25 24 23 42 42 H 1.07998 * 125.79251 * 179.75533 * 26 25 24 43 43 H 1.08006 * 120.07429 * 0.02562 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2537 -0.6289 1.5861 6 6 2.4256 0.2395 2.6497 7 6 2.7703 -0.2460 3.8984 8 6 2.9394 -1.6016 4.0922 9 6 2.7728 -2.4823 3.0225 10 6 2.9580 -3.9356 3.2217 11 8 2.3383 -4.7266 2.5377 12 7 3.8139 -4.3834 4.1616 13 6 4.4607 -3.4369 5.0737 14 6 3.7084 -3.4032 6.3791 15 1 2.8359 -4.0251 6.5157 16 6 4.1344 -2.5794 7.3994 17 7 5.1970 -1.8226 7.2332 18 14 3.2022 -2.5383 9.0176 19 1 3.2057 -3.8932 9.6255 20 1 3.8578 -1.5788 9.9422 21 1 1.8019 -2.1098 8.7714 22 6 4.0975 -5.8165 4.2710 23 6 5.2733 -6.1641 3.3948 24 6 6.5655 -6.1428 3.7674 25 6 7.3231 -6.5392 2.6414 26 6 6.4491 -6.7711 1.6457 27 8 5.2089 -6.5424 2.1077 28 6 2.4254 -1.9857 1.7651 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3634 -1.0167 0.1498 32 1 2.2900 1.3011 2.5043 33 1 2.9025 0.4371 4.7244 34 1 3.2040 -1.9798 5.0686 35 1 5.4886 -3.7513 5.2548 36 1 4.4583 -2.4425 4.6274 37 1 5.4970 -1.2433 7.9510 38 1 4.3311 -6.0625 5.3069 39 1 3.2246 -6.3851 3.9504 40 1 6.9505 -5.8764 4.7407 41 1 8.3977 -6.6341 2.5897 42 1 6.7017 -7.0873 0.6444 43 1 2.2910 -2.6625 0.9342 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071186098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -29.439542 kcal Electronic energy + Delta-G solvation = -30575.458171 eV Core-core repulsion = 26295.446535 eV Total energy + Delta-G solvation = -4280.011636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20855 -40.00397 -37.92405 -37.07932 -35.92407 -35.58714 -33.17550 -32.58858 -31.70803 -30.87867 -29.91342 -29.55548 -27.69462 -25.84991 -23.69875 -22.84215 -22.63966 -21.36950 -20.45195 -19.63000 -18.67844 -17.51212 -17.27233 -16.55734 -16.41508 -16.22651 -16.11684 -15.80942 -15.45888 -15.19296 -14.78830 -14.61849 -14.27966 -13.89146 -13.63994 -13.46984 -13.31602 -13.04542 -12.83220 -12.62918 -12.50843 -12.40833 -12.37302 -12.21655 -12.07405 -11.98815 -11.54520 -11.35230 -11.23780 -11.10176 -11.08621 -10.75380 -10.45274 -10.08513 -10.02330 -9.60657 -9.37164 -9.03349 -8.79527 -8.63204 -8.22516 -8.02086 -6.46115 -4.57998 0.05927 1.03998 1.34732 1.99105 2.86050 2.88962 3.08845 3.10638 3.15729 3.18432 3.39244 3.76602 3.82076 4.07562 4.11532 4.17395 4.63180 4.78752 4.83945 4.97141 5.04672 5.12409 5.24052 5.33296 5.37733 5.48423 5.62475 5.68631 5.71717 5.95101 5.99350 6.09020 6.10732 6.19130 6.25768 6.39354 6.45893 6.68388 6.78009 6.80986 6.96377 7.12730 7.25125 7.47973 7.49287 7.71651 8.05618 8.50737 8.73467 9.11275 10.57917 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.007289 B = 0.004243 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3840.679616 B = 6596.775450 C = 9479.504286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.504 3.496 3 O -0.943 6.943 4 O -0.939 6.939 5 C -0.685 4.685 6 C -0.010 4.010 7 C -0.153 4.153 8 C -0.040 4.040 9 C -0.154 4.154 10 C 0.561 3.439 11 O -0.556 6.556 12 N -0.585 5.585 13 C 0.208 3.792 14 C -0.553 4.553 15 H 0.069 0.931 16 C 0.071 3.929 17 N -0.877 5.877 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.197 3.803 23 C -0.020 4.020 24 C -0.199 4.199 25 C -0.217 4.217 26 C -0.050 4.050 27 O -0.168 6.168 28 C 0.026 3.974 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.211 0.789 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.272 0.728 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 0.794 -7.857 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.684 3.316 3 O -0.940 6.940 4 O -0.937 6.937 5 C -0.773 4.773 6 C -0.030 4.030 7 C -0.172 4.172 8 C -0.057 4.057 9 C -0.158 4.158 10 C 0.350 3.650 11 O -0.437 6.437 12 N -0.315 5.315 13 C 0.089 3.911 14 C -0.591 4.591 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.512 5.512 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.073 3.927 23 C -0.071 4.071 24 C -0.219 4.219 25 C -0.236 4.236 26 C -0.118 4.118 27 O -0.063 6.063 28 C 0.006 3.994 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.227 0.773 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.214 0.786 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.237 0.754 -8.906 9.891 hybrid contribution -0.339 -0.105 1.758 1.794 sum -4.577 0.649 -7.147 8.512 Atomic orbital electron populations 1.30237 1.26193 1.12214 1.11461 1.04940 0.77677 0.74500 0.74438 1.93564 1.77344 1.36735 1.86339 1.93585 1.77222 1.61538 1.61329 1.30188 1.22734 1.02545 1.21836 1.21075 0.91216 0.98901 0.91769 1.21377 1.02293 0.96263 0.97225 1.23966 0.85142 0.93182 1.03440 1.20037 1.06847 0.93936 0.94939 1.18235 0.79362 0.87724 0.79706 1.90703 1.47988 1.57032 1.47960 1.48093 1.43327 1.07050 1.33012 1.20352 0.94017 0.89188 0.87532 1.21432 1.13825 1.25939 0.97873 0.91303 1.25021 0.94815 0.94776 0.98901 1.69924 1.22792 1.24563 1.33967 0.86512 0.80029 0.78416 0.82455 1.19780 1.20887 1.19754 1.19715 0.93121 0.82776 0.97042 1.23184 0.97682 1.03284 0.82981 1.21679 0.92276 1.06969 1.00971 1.21795 1.00461 1.07567 0.93805 1.23980 0.81516 1.06195 1.00101 1.84099 1.30862 1.66015 1.25348 1.20876 0.88866 0.92937 0.96738 0.85016 0.85325 0.84856 0.84468 0.84668 0.77289 0.94253 0.91832 0.91831 0.86609 0.88898 0.83302 0.83824 0.78620 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.76 10.80 101.05 1.09 -3.67 16 2 S 2.50 29.97 5.80 -107.50 -0.62 29.35 16 3 O -0.94 -13.47 17.12 -57.54 -0.98 -14.46 16 4 O -0.94 -14.47 17.12 -57.54 -0.98 -15.45 16 5 C -0.69 -10.11 5.65 -39.64 -0.22 -10.33 16 6 C -0.01 -0.15 9.47 -39.49 -0.37 -0.52 16 7 C -0.15 -2.49 10.03 -39.64 -0.40 -2.89 16 8 C -0.04 -0.77 7.49 -39.18 -0.29 -1.07 16 9 C -0.15 -3.01 5.58 -104.97 -0.59 -3.60 16 10 C 0.56 11.92 7.47 -12.33 -0.09 11.83 16 11 O -0.56 -12.65 16.25 5.32 0.09 -12.56 16 12 N -0.59 -11.99 2.45 -177.55 -0.43 -12.43 16 13 C 0.21 4.55 4.64 -5.19 -0.02 4.53 16 14 C -0.55 -12.66 7.46 -34.44 -0.26 -12.92 16 15 H 0.07 1.59 7.81 -52.48 -0.41 1.18 16 16 C 0.07 1.65 5.32 -17.82 -0.09 1.56 16 17 N -0.88 -21.43 13.29 55.43 0.74 -20.70 16 18 Si 0.90 18.42 29.54 -169.99 -5.02 13.39 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.20 3.59 5.99 -5.19 -0.03 3.55 16 23 C -0.02 -0.35 6.90 -35.62 -0.25 -0.60 16 24 C -0.20 -3.32 10.81 -39.70 -0.43 -3.75 16 25 C -0.22 -3.19 10.91 -39.70 -0.43 -3.62 16 26 C -0.05 -0.72 12.09 29.41 0.36 -0.37 16 27 O -0.17 -3.05 10.65 5.70 0.06 -2.99 16 28 C 0.03 0.45 9.02 -39.19 -0.35 0.09 16 29 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.14 1.58 7.56 -52.49 -0.40 1.19 16 33 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.21 4.43 2.98 -52.49 -0.16 4.28 16 35 H 0.04 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.06 1.45 4.09 -51.95 -0.21 1.23 16 37 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 38 H 0.12 1.94 8.07 -51.93 -0.42 1.52 16 39 H 0.09 1.67 7.35 -51.93 -0.38 1.29 16 40 H 0.15 2.37 8.06 -52.49 -0.42 1.94 16 41 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 43 H 0.14 2.42 7.42 -52.48 -0.39 2.03 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -32.29 381.52 -8.69 -40.98 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.88 Total: 10.88 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.39 Total: -21.76 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.30 Total: -33.12 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.82 Total: -45.46 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Atomic # 16 Polarization: 29.97 SS G_CDS: -0.62 Total: 29.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.29 -8.69 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071186098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.537 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds