Wall clock time and date at job start Tue Mar 31 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47242 * 2 1 4 4 C 1.42898 * 114.00323 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47413 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47405 * 305.00183 * 5 4 3 7 7 O 1.42902 * 109.47237 * 65.00080 * 5 4 3 8 8 C 1.52997 * 109.47363 * 185.00153 * 5 4 3 9 9 N 1.46900 * 109.47315 * 180.02562 * 8 5 4 10 10 C 1.46902 * 110.99751 * 294.29824 * 9 8 5 11 11 C 1.53242 * 109.33712 * 172.74713 * 10 9 8 12 12 N 1.47078 * 108.52457 * 53.83361 * 11 10 9 13 13 C 1.34774 * 120.88368 * 128.79035 * 12 11 10 14 14 O 1.21554 * 119.99748 * 354.18430 * 13 12 11 15 15 C 1.47883 * 120.00128 * 174.18745 * 13 12 11 16 16 C 1.39922 * 120.02403 * 327.99040 * 15 13 12 17 17 C 1.38325 * 120.35786 * 179.71651 * 16 15 13 18 18 C 1.37759 * 120.41019 * 0.56217 * 17 16 15 19 19 C 1.40743 * 120.03935 * 359.71219 * 18 17 16 20 20 C 1.41439 * 120.17793 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99743 * 330.72322 * 20 19 18 22 22 C 1.39940 * 120.00211 * 150.71274 * 20 19 18 23 23 N 1.30828 * 119.99443 * 349.41303 * 22 20 19 24 24 Si 1.86799 * 120.00124 * 169.40710 * 22 20 19 25 25 H 1.48506 * 109.46702 * 60.00552 * 24 22 20 26 26 H 1.48505 * 109.46779 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47001 * 300.00571 * 24 22 20 28 28 C 1.38997 * 120.02676 * 148.26326 * 15 13 12 29 29 C 1.47081 * 118.23593 * 308.81575 * 12 11 10 30 30 C 1.46902 * 110.99897 * 170.00003 * 9 8 5 31 31 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46944 * 299.99652 * 1 2 3 33 33 H 1.08994 * 109.46975 * 59.99763 * 1 2 3 34 34 H 1.09003 * 109.47130 * 239.99956 * 2 1 3 35 35 H 1.09000 * 109.47176 * 120.00657 * 2 1 3 36 36 H 1.09003 * 109.46835 * 59.99877 * 4 3 2 37 37 H 1.09007 * 109.46951 * 300.00510 * 4 3 2 38 38 H 0.96701 * 113.99886 * 59.99994 * 7 5 4 39 39 H 1.09000 * 109.47232 * 299.99780 * 8 5 4 40 40 H 1.08998 * 109.47095 * 60.00110 * 8 5 4 41 41 H 1.08996 * 109.49442 * 292.70875 * 10 9 8 42 42 H 1.09004 * 109.49045 * 52.79142 * 10 9 8 43 43 H 1.08999 * 109.63138 * 294.11590 * 11 10 9 44 44 H 1.09006 * 109.78721 * 173.63870 * 11 10 9 45 45 H 1.07996 * 119.81755 * 359.97211 * 16 15 13 46 46 H 1.08001 * 119.79313 * 180.25233 * 17 16 15 47 47 H 1.08006 * 119.97541 * 179.69946 * 18 17 16 48 48 H 0.97007 * 119.99707 * 179.97438 * 23 22 20 49 49 H 1.08000 * 120.19937 * 0.02562 * 28 15 13 50 50 H 1.09007 * 109.62589 * 291.47634 * 29 12 11 51 51 H 1.08994 * 109.62835 * 170.89265 * 29 12 11 52 52 H 1.08993 * 109.49724 * 307.20688 * 30 9 8 53 53 H 1.08999 * 109.49478 * 67.29836 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.3499 3.4417 -0.8407 7 8 3.3977 3.5450 1.2223 8 6 5.3453 3.0606 -0.1240 9 7 5.7242 4.4799 -0.1228 10 6 5.2119 5.1625 -1.3185 11 6 5.4693 6.6679 -1.1928 12 7 6.9000 6.8764 -0.9228 13 6 7.6255 7.7373 -1.6636 14 8 7.1271 8.2738 -2.6338 15 6 9.0280 8.0290 -1.2963 16 6 9.4178 8.0122 0.0474 17 6 10.7290 8.2783 0.3984 18 6 11.6636 8.5742 -0.5695 19 6 11.2888 8.6015 -1.9258 20 6 12.2461 8.9045 -2.9220 21 1 13.0819 9.5478 -2.6898 22 6 12.1104 8.3705 -4.2084 23 7 11.2260 7.4340 -4.4378 24 14 13.1916 8.9949 -5.5978 25 1 14.6181 8.7577 -5.2596 26 1 12.8529 8.2736 -6.8509 27 1 12.9630 10.4498 -5.7873 28 6 9.9587 8.3258 -2.2851 29 6 7.5180 6.1200 0.1768 30 6 7.1799 4.6361 -0.0027 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8340 0.9764 -0.8892 37 1 3.8333 0.9766 0.8908 38 1 3.7822 3.1468 2.0151 39 1 5.8209 2.5574 0.7179 40 1 5.6716 2.5979 -1.0554 41 1 5.7212 4.7789 -2.2025 42 1 4.1405 4.9830 -1.4087 43 1 4.8787 7.0731 -0.3712 44 1 5.1954 7.1679 -2.1219 45 1 8.6918 7.7861 0.8144 46 1 11.0208 8.2588 1.4380 47 1 12.6844 8.7857 -0.2872 48 1 11.1316 7.0641 -5.3296 49 1 9.6611 8.3446 -3.3231 50 1 7.1243 6.4724 1.1303 51 1 8.5993 6.2548 0.1516 52 1 7.5359 4.0750 0.8612 53 1 7.6618 4.2600 -0.9051 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071881938.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:03 Heat of formation + Delta-G solvation = -114.711125 kcal Electronic energy + Delta-G solvation = -32656.157688 eV Core-core repulsion = 28299.080379 eV Total energy + Delta-G solvation = -4357.077309 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.204 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.48160 -39.99715 -39.10414 -38.62988 -37.46832 -35.79203 -35.25044 -32.81937 -32.59527 -31.61941 -31.33367 -30.88426 -28.45261 -27.32367 -25.55460 -25.06071 -23.82919 -23.67100 -22.86583 -22.36025 -21.73118 -20.27179 -19.30990 -18.18988 -17.60766 -17.58361 -17.39719 -16.99515 -16.76045 -16.62297 -16.45598 -16.31388 -16.07111 -15.69489 -15.42639 -15.30121 -15.03964 -14.78122 -14.51139 -14.31118 -14.19936 -13.95874 -13.82086 -13.58234 -13.24306 -13.18795 -12.95246 -12.83316 -12.80362 -12.58550 -12.41413 -12.38945 -12.25273 -12.21410 -12.12520 -12.08061 -11.89591 -11.60695 -11.46124 -11.10878 -10.90968 -10.70585 -10.57897 -9.86154 -9.45514 -9.31163 -9.27335 -8.62748 -6.40769 0.43080 1.00131 1.35450 1.46971 1.48142 1.89299 2.04642 2.19062 2.42842 2.75935 2.98508 3.60507 3.61899 3.66447 3.80945 3.88215 3.94851 4.06223 4.11184 4.15536 4.19278 4.26483 4.31716 4.37787 4.45403 4.47086 4.49085 4.50703 4.52188 4.61126 4.66991 4.70501 4.79717 4.82276 4.86313 4.91428 5.00908 5.02375 5.07664 5.08576 5.18847 5.26064 5.30213 5.49373 5.55546 5.83042 5.90328 5.92428 5.97019 6.04548 6.26181 6.27755 6.37615 6.60765 6.88713 6.93808 6.98536 7.18027 8.33467 Molecular weight = 362.20amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.001860 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.805831 B =15051.270548 C =15707.942718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.033 3.967 5 C 0.120 3.880 6 H 0.086 0.914 7 O -0.557 6.557 8 C 0.029 3.971 9 N -0.524 5.524 10 C 0.049 3.951 11 C 0.116 3.884 12 N -0.607 5.607 13 C 0.561 3.439 14 O -0.595 6.595 15 C -0.137 4.137 16 C -0.195 4.195 17 C -0.096 4.096 18 C -0.209 4.209 19 C 0.068 3.932 20 C -0.499 4.499 21 H 0.083 0.917 22 C 0.027 3.973 23 N -0.838 5.838 24 Si 0.984 3.016 25 H -0.252 1.252 26 H -0.273 1.273 27 H -0.262 1.262 28 C -0.124 4.124 29 C 0.095 3.905 30 C 0.045 3.955 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.384 0.616 39 H 0.107 0.893 40 H 0.045 0.955 41 H 0.021 0.979 42 H 0.102 0.898 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.111 0.889 48 H 0.283 0.717 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.107 0.893 52 H 0.119 0.881 53 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 -17.338 12.199 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.327 6.327 4 C -0.045 4.045 5 C 0.060 3.940 6 H 0.104 0.896 7 O -0.363 6.363 8 C -0.099 4.099 9 N -0.248 5.248 10 C -0.079 4.079 11 C -0.006 4.006 12 N -0.339 5.339 13 C 0.353 3.647 14 O -0.477 6.477 15 C -0.140 4.140 16 C -0.214 4.214 17 C -0.113 4.113 18 C -0.229 4.229 19 C 0.066 3.934 20 C -0.529 4.529 21 H 0.101 0.899 22 C -0.186 4.186 23 N -0.465 5.465 24 Si 0.805 3.195 25 H -0.176 1.176 26 H -0.198 1.198 27 H -0.187 1.187 28 C -0.145 4.145 29 C -0.027 4.027 30 C -0.083 4.083 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.233 0.767 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.160 0.840 46 H 0.160 0.840 47 H 0.129 0.871 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.114 0.886 51 H 0.125 0.875 52 H 0.137 0.863 53 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -14.866 -16.489 11.524 25.014 hybrid contribution 1.270 -0.602 -1.721 2.222 sum -13.595 -17.091 9.803 23.938 Atomic orbital electron populations 1.21768 0.93340 1.03259 1.02506 1.22655 0.96142 0.82959 1.00886 1.87930 1.21389 1.27814 1.95583 1.23243 0.81697 0.97350 1.02177 1.21764 0.92408 0.91231 0.88592 0.89614 1.86630 1.72171 1.61870 1.15650 1.22759 0.95916 0.88421 1.02841 1.61885 1.11881 1.12778 1.38266 1.22419 1.01401 0.93240 0.90886 1.21697 0.80416 0.96189 1.02303 1.48064 1.10197 1.41805 1.33827 1.18940 0.86512 0.78170 0.81098 1.90643 1.73422 1.54243 1.29418 1.19710 0.91759 1.06702 0.95838 1.21115 0.97338 1.09697 0.93227 1.20958 0.92660 0.98600 0.99117 1.21478 0.99296 1.09248 0.92885 1.17923 0.91711 0.90275 0.93468 1.19830 1.09510 1.28070 0.95458 0.89890 1.26807 0.96606 0.92997 1.02189 1.69863 1.31629 1.21001 1.23986 0.85220 0.79030 0.79206 0.76080 1.17567 1.19804 1.18696 1.21339 0.92851 1.02706 0.97605 1.22645 1.00429 0.90283 0.89345 1.22564 0.87405 0.96444 1.01905 0.89158 0.92426 0.92700 0.92738 0.92252 0.91735 0.90940 0.76709 0.87526 0.93655 0.96090 0.88033 0.89479 0.90995 0.83970 0.83954 0.87132 0.90618 0.89049 0.88590 0.87548 0.86256 0.96212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.41 -7.24 10.31 -144.34 -1.49 -8.73 16 4 C 0.03 0.41 5.57 71.98 0.40 0.82 16 5 C 0.12 1.87 3.12 30.59 0.10 1.97 16 6 H 0.09 1.66 6.40 -2.38 -0.02 1.64 16 7 O -0.56 -10.04 13.17 -144.34 -1.90 -11.94 16 8 C 0.03 0.42 4.62 86.30 0.40 0.81 16 9 N -0.52 -10.68 4.50 -895.24 -4.03 -14.71 16 10 C 0.05 1.22 5.46 86.38 0.47 1.69 16 11 C 0.12 3.51 6.61 86.35 0.57 4.08 16 12 N -0.61 -21.19 3.01 -821.27 -2.47 -23.66 16 13 C 0.56 25.89 7.43 86.80 0.64 26.53 16 14 O -0.60 -32.09 16.19 -3.89 -0.06 -32.16 16 15 C -0.14 -6.56 5.38 -20.13 -0.11 -6.67 16 16 C -0.19 -7.57 7.40 22.70 0.17 -7.40 16 17 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 18 C -0.21 -9.58 9.78 22.77 0.22 -9.36 16 19 C 0.07 3.70 5.54 -21.32 -0.12 3.58 16 20 C -0.50 -27.21 9.06 23.47 0.21 -27.00 16 21 H 0.08 4.26 7.87 -2.91 -0.02 4.24 16 22 C 0.03 1.42 5.25 85.25 0.45 1.87 16 23 N -0.84 -46.76 10.87 21.83 0.24 -46.53 16 24 Si 0.98 40.02 29.57 68.60 2.03 42.05 16 25 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 27 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 28 C -0.12 -6.96 8.20 23.01 0.19 -6.77 16 29 C 0.09 2.53 4.85 86.35 0.42 2.95 16 30 C 0.05 0.99 5.62 86.39 0.49 1.47 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 38 H 0.38 4.04 9.05 -74.06 -0.67 3.37 16 39 H 0.11 1.04 7.97 -2.39 -0.02 1.02 16 40 H 0.05 0.68 8.12 -2.39 -0.02 0.66 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 2.20 6.16 -2.39 -0.01 2.18 16 43 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.07 2.48 7.04 -2.38 -0.02 2.46 16 45 H 0.14 4.41 5.63 -2.91 -0.02 4.40 16 46 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 47 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 48 H 0.28 14.65 8.30 -92.70 -0.77 13.88 16 49 H 0.09 5.75 6.14 -2.91 -0.02 5.74 16 50 H 0.10 2.15 7.94 -2.38 -0.02 2.13 16 51 H 0.11 3.18 4.48 -2.39 -0.01 3.17 16 52 H 0.12 1.82 7.99 -2.39 -0.02 1.80 16 53 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -74.48 420.41 -1.49 -75.98 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.25 Total: 34.39 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.94 Total: -14.69 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -6.26 Total: -84.89 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -3.45 Total: -52.83 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -74.48 -1.49 -75.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071881938.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.736 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds