Wall clock time and date at job start Tue Mar 31 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86791 * 120.00442 * 2 1 4 4 H 1.48497 * 109.47601 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47035 * 300.00217 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99754 * 3 2 1 7 7 C 1.39892 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00628 * 197.93322 * 7 2 1 9 9 C 1.41217 * 119.99670 * 17.93771 * 7 2 1 10 10 C 1.40841 * 120.17803 * 204.53902 * 9 7 2 11 11 C 1.36433 * 119.81251 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18660 * 0.02562 * 11 10 9 13 13 O 1.35667 * 119.81946 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00203 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47499 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47028 * 64.99721 * 15 14 13 17 17 C 1.38452 * 120.00067 * 179.97438 * 16 15 14 18 18 N 1.32484 * 119.20409 * 359.73440 * 17 16 15 19 19 C 1.32281 * 120.74533 * 179.75544 * 18 17 16 20 20 C 1.38679 * 119.18739 * 0.50720 * 19 18 17 21 21 Br 1.89103 * 120.72953 * 179.72641 * 20 19 18 22 22 C 1.38681 * 118.54097 * 359.74919 * 20 19 18 23 23 N 1.32277 * 119.18120 * 359.97438 * 22 20 19 24 24 C 1.39317 * 120.36073 * 0.25420 * 12 11 10 25 25 C 1.36438 * 120.18685 * 359.48179 * 24 12 11 26 26 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.09114 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.90765 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47263 * 59.99897 * 14 13 12 30 30 H 1.09000 * 109.47057 * 300.00000 * 14 13 12 31 31 H 1.09002 * 109.46810 * 305.00387 * 15 14 13 32 32 H 1.08996 * 109.47049 * 184.99959 * 15 14 13 33 33 H 0.97004 * 120.00314 * 0.02562 * 16 15 14 34 34 H 1.08003 * 120.40356 * 180.25572 * 19 18 17 35 35 H 1.07994 * 120.40542 * 179.97438 * 22 20 19 36 36 H 1.08007 * 119.90433 * 179.72716 * 24 12 11 37 37 H 1.07994 * 120.09412 * 180.25988 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3756 10 6 1.8262 -3.6480 0.0877 11 6 1.1883 -4.7964 -0.2807 12 6 0.0727 -4.7418 -1.1133 13 8 -0.5556 -5.8883 -1.4755 14 6 -1.6937 -5.7623 -2.3304 15 6 -2.2640 -7.1504 -2.6285 16 7 -2.7732 -7.7454 -1.3904 17 6 -3.3410 -9.0079 -1.4115 18 7 -3.4205 -9.6619 -2.5610 19 6 -3.9527 -10.8717 -2.6154 20 6 -4.4396 -11.4492 -1.4524 21 35 -5.2161 -13.1732 -1.4814 22 6 -4.3450 -10.7344 -0.2677 23 7 -3.7961 -9.5310 -0.2826 24 6 -0.3979 -3.5166 -1.5807 25 6 0.2253 -2.3585 -1.2173 26 1 -0.4850 0.8401 -0.0004 27 1 2.6917 -3.6922 0.7322 28 1 1.5498 -5.7506 0.0733 29 1 -1.3960 -5.2842 -3.2636 30 1 -2.4531 -5.1554 -1.8374 31 1 -1.4791 -7.7848 -3.0404 32 1 -3.0760 -7.0623 -3.3502 33 1 -2.7134 -7.2544 -0.5559 34 1 -4.0109 -11.4014 -3.5547 35 1 -4.7149 -11.1552 0.6555 36 1 -1.2608 -3.4831 -2.2293 37 1 -0.1432 -1.4093 -1.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:35 Heat of formation + Delta-G solvation = 40.607014 kcal Electronic energy + Delta-G solvation = -22184.102671 eV Core-core repulsion = 18587.116746 eV Total energy + Delta-G solvation = -3596.985925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.23391 -38.98771 -36.97372 -35.87447 -34.03734 -33.45197 -32.71754 -30.47724 -29.69667 -29.11862 -28.10740 -25.23173 -24.82638 -23.57772 -22.54133 -21.07818 -20.33290 -18.56498 -17.92617 -17.43068 -17.14397 -15.93415 -15.66495 -15.56827 -15.25940 -14.89195 -14.48552 -14.07090 -13.98305 -13.81598 -13.62297 -12.98755 -12.45944 -12.32997 -11.95899 -11.89421 -11.51844 -11.36269 -11.26856 -11.20483 -11.09621 -11.02574 -10.86541 -10.64352 -10.17107 -9.99917 -9.83258 -9.43336 -9.41904 -9.07025 -8.28273 -7.71481 -7.08352 -6.78207 -4.30502 0.66661 0.80902 1.25559 2.63376 2.71030 2.91193 3.05759 3.10830 3.16198 3.50502 3.80251 3.91015 3.93511 4.21143 4.40045 4.56366 4.62037 4.89880 5.18172 5.30520 5.48838 5.50423 5.61812 5.68414 5.86916 6.04358 6.21752 6.42835 6.63876 6.74079 6.83563 7.01632 7.17004 7.22470 7.34548 7.50070 7.84275 7.95123 7.99054 8.09224 8.36675 8.58922 8.85170 8.93160 10.16646 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.044805 B = 0.001432 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.786227 B =19553.826402 C =19631.361982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.197 4.197 11 C -0.110 4.110 12 C -0.013 4.013 13 O -0.328 6.328 14 C 0.052 3.948 15 C 0.139 3.861 16 N -0.677 5.677 17 C 0.577 3.423 18 N -0.562 5.562 19 C 0.231 3.769 20 C -0.279 4.279 21 Br -0.033 7.033 22 C 0.232 3.768 23 N -0.562 5.562 24 C -0.172 4.172 25 C -0.135 4.135 26 H 0.279 0.721 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.423 0.577 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.094 0.906 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -21.522 -5.168 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.129 4.129 12 C -0.056 4.056 13 O -0.244 6.244 14 C -0.024 4.024 15 C 0.015 3.985 16 N -0.312 5.312 17 C 0.221 3.779 18 N -0.285 5.285 19 C 0.060 3.940 20 C -0.368 4.368 21 Br 0.050 6.950 22 C 0.061 3.939 23 N -0.285 5.285 24 C -0.191 4.191 25 C -0.154 4.154 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.262 0.738 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.112 0.888 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.186 -21.036 -5.278 24.877 hybrid contribution -0.044 0.733 0.273 0.784 sum -12.230 -20.303 -5.004 24.224 Atomic orbital electron populations 1.69839 1.07553 1.29041 1.36061 1.25885 0.94720 1.01297 0.92332 0.86284 0.81027 0.81033 0.78518 1.18406 1.19769 1.20042 1.19517 0.98166 0.91197 1.40277 0.90402 1.17620 0.91789 0.92205 0.89830 1.20601 1.03230 0.92222 1.05588 1.19609 0.95496 0.97645 1.00169 1.18515 0.97908 0.83661 1.05543 1.85831 1.42178 1.31111 1.65257 1.22729 0.88756 0.95480 0.95469 1.21512 0.98477 0.93125 0.85394 1.44391 1.61014 1.12862 1.12903 1.19491 0.86515 0.87283 0.84658 1.68098 1.23280 1.09660 1.27468 1.22968 0.85380 0.88507 0.97134 1.23183 1.16337 0.97733 0.99537 1.96696 1.81768 1.17412 1.99169 1.22963 0.87051 0.87130 0.96777 1.68081 1.17940 1.13781 1.28689 1.20602 1.01475 0.92896 1.04156 1.20940 0.98548 0.96501 0.99433 0.90997 0.88200 0.88579 0.90911 0.92197 0.90235 0.89656 0.73810 0.80922 0.80899 0.88765 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.36 10.96 55.54 0.61 -19.75 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.07 9.04 -37.83 -0.34 -12.41 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.09 2.30 5.57 -106.80 -0.60 1.71 16 10 C -0.20 -4.77 9.74 -39.25 -0.38 -5.15 16 11 C -0.11 -2.51 9.92 -39.83 -0.40 -2.90 16 12 C -0.01 -0.29 6.71 -38.78 -0.26 -0.55 16 13 O -0.33 -6.13 10.07 -18.70 -0.19 -6.32 16 14 C 0.05 0.74 4.86 37.16 0.18 0.92 16 15 C 0.14 1.65 6.03 -4.04 -0.02 1.62 16 16 N -0.68 -8.66 5.65 -62.30 -0.35 -9.01 16 17 C 0.58 7.46 8.43 -322.77 -2.72 4.74 16 18 N -0.56 -6.67 9.59 -13.90 -0.13 -6.80 16 19 C 0.23 2.17 11.08 -17.20 -0.19 1.98 16 20 C -0.28 -2.50 6.27 -39.25 -0.25 -2.75 16 21 Br -0.03 -0.24 33.76 -68.01 -2.30 -2.54 16 22 C 0.23 2.26 11.08 -17.20 -0.19 2.07 16 23 N -0.56 -7.02 10.46 -13.91 -0.15 -7.17 16 24 C -0.17 -3.88 8.96 -39.83 -0.36 -4.23 16 25 C -0.13 -3.41 8.64 -39.25 -0.34 -3.75 16 26 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 27 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 28 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.07 0.97 7.63 -51.93 -0.40 0.58 16 30 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.42 5.58 8.59 -40.82 -0.35 5.23 16 34 H 0.17 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.09 1.85 6.27 -52.48 -0.33 1.52 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -28.62 343.91 -12.19 -40.81 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.88 Total: 9.14 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -5.95 Total: -16.95 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.02 Total: -42.73 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.19 Total: -6.32 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.30 Total: -2.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.62 -12.19 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.416 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds