Wall clock time and date at job start Tue Mar 31 2020 05:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86791 * 120.00442 * 2 1 4 4 H 1.48497 * 109.47601 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47035 * 300.00217 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99754 * 3 2 1 7 7 C 1.39892 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00628 * 197.93322 * 7 2 1 9 9 C 1.41217 * 119.99670 * 17.93771 * 7 2 1 10 10 C 1.40841 * 120.17803 * 204.53902 * 9 7 2 11 11 C 1.36433 * 119.81251 * 180.02562 * 10 9 7 12 12 C 1.39316 * 120.18660 * 0.02562 * 11 10 9 13 13 O 1.35667 * 119.81946 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00203 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47499 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47028 * 64.99721 * 15 14 13 17 17 C 1.38452 * 120.00067 * 179.97438 * 16 15 14 18 18 N 1.32484 * 119.20409 * 359.73440 * 17 16 15 19 19 C 1.32281 * 120.74533 * 179.75544 * 18 17 16 20 20 C 1.38679 * 119.18739 * 0.50720 * 19 18 17 21 21 Br 1.89103 * 120.72953 * 179.72641 * 20 19 18 22 22 C 1.38681 * 118.54097 * 359.74919 * 20 19 18 23 23 N 1.32277 * 119.18120 * 359.97438 * 22 20 19 24 24 C 1.39317 * 120.36073 * 0.25420 * 12 11 10 25 25 C 1.36438 * 120.18685 * 359.48179 * 24 12 11 26 26 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.09114 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.90765 * 179.97438 * 11 10 9 29 29 H 1.08999 * 109.47263 * 59.99897 * 14 13 12 30 30 H 1.09000 * 109.47057 * 300.00000 * 14 13 12 31 31 H 1.09002 * 109.46810 * 305.00387 * 15 14 13 32 32 H 1.08996 * 109.47049 * 184.99959 * 15 14 13 33 33 H 0.97004 * 120.00314 * 0.02562 * 16 15 14 34 34 H 1.08003 * 120.40356 * 180.25572 * 19 18 17 35 35 H 1.07994 * 120.40542 * 179.97438 * 22 20 19 36 36 H 1.08007 * 119.90433 * 179.72716 * 24 12 11 37 37 H 1.07994 * 120.09412 * 180.25988 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3462 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0082 -1.2115 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3756 10 6 1.8262 -3.6480 0.0877 11 6 1.1883 -4.7964 -0.2807 12 6 0.0727 -4.7418 -1.1133 13 8 -0.5556 -5.8883 -1.4755 14 6 -1.6937 -5.7623 -2.3304 15 6 -2.2640 -7.1504 -2.6285 16 7 -2.7732 -7.7454 -1.3904 17 6 -3.3410 -9.0079 -1.4115 18 7 -3.4205 -9.6619 -2.5610 19 6 -3.9527 -10.8717 -2.6154 20 6 -4.4396 -11.4492 -1.4524 21 35 -5.2161 -13.1732 -1.4814 22 6 -4.3450 -10.7344 -0.2677 23 7 -3.7961 -9.5310 -0.2826 24 6 -0.3979 -3.5166 -1.5807 25 6 0.2253 -2.3585 -1.2173 26 1 -0.4850 0.8401 -0.0004 27 1 2.6917 -3.6922 0.7322 28 1 1.5498 -5.7506 0.0733 29 1 -1.3960 -5.2842 -3.2636 30 1 -2.4531 -5.1554 -1.8374 31 1 -1.4791 -7.7848 -3.0404 32 1 -3.0760 -7.0623 -3.3502 33 1 -2.7134 -7.2544 -0.5559 34 1 -4.0109 -11.4014 -3.5547 35 1 -4.7149 -11.1552 0.6555 36 1 -1.2608 -3.4831 -2.2293 37 1 -0.1432 -1.4093 -1.5771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071907733.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:34 Heat of formation + Delta-G solvation = 26.569798 kcal Electronic energy + Delta-G solvation = -22184.711370 eV Core-core repulsion = 18587.116746 eV Total energy + Delta-G solvation = -3597.594624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04856 -40.57658 -38.46779 -37.05557 -35.22782 -34.84990 -33.56917 -31.66348 -31.46439 -30.63147 -29.11775 -26.71887 -25.95510 -24.61548 -23.62012 -22.86389 -21.93390 -19.43185 -19.27182 -18.85324 -18.66661 -17.18193 -16.83635 -16.57361 -16.44367 -16.14428 -15.77457 -15.47562 -15.24061 -14.92249 -14.56058 -14.52309 -14.13020 -13.85178 -13.70715 -13.23047 -12.82276 -12.72603 -12.65579 -12.45423 -12.29665 -12.16195 -12.04080 -11.67423 -11.58966 -11.50564 -11.23672 -10.90332 -10.87430 -10.23060 -9.56550 -9.12145 -8.91815 -8.60996 -6.23052 -0.12909 0.04645 0.55624 0.93256 1.04510 1.39573 1.50037 1.54496 1.75745 2.22483 2.53061 2.68717 2.71857 3.06357 3.53003 3.57915 3.70258 3.81898 3.89730 4.12076 4.29303 4.38704 4.45423 4.53902 4.61326 4.71651 4.92294 5.00468 5.02141 5.15177 5.36954 5.51838 5.59319 5.66002 5.87691 5.97183 6.06353 6.23511 6.26566 6.55296 6.78107 6.95068 7.09044 7.13258 8.35892 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.044805 B = 0.001432 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.786227 B =19553.826402 C =19631.361982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.053 3.947 10 C -0.206 4.206 11 C -0.122 4.122 12 C 0.003 3.997 13 O -0.332 6.332 14 C 0.047 3.953 15 C 0.152 3.848 16 N -0.687 5.687 17 C 0.562 3.438 18 N -0.575 5.575 19 C 0.226 3.774 20 C -0.274 4.274 21 Br -0.013 7.013 22 C 0.225 3.775 23 N -0.586 5.586 24 C -0.174 4.174 25 C -0.155 4.155 26 H 0.287 0.713 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.418 0.582 34 H 0.201 0.799 35 H 0.197 0.803 36 H 0.122 0.878 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.190 -22.838 -5.947 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.529 4.529 8 H 0.092 0.908 9 C 0.051 3.949 10 C -0.226 4.226 11 C -0.140 4.140 12 C -0.041 4.041 13 O -0.248 6.248 14 C -0.028 4.028 15 C 0.028 3.972 16 N -0.321 5.321 17 C 0.205 3.795 18 N -0.299 5.299 19 C 0.057 3.943 20 C -0.362 4.362 21 Br 0.070 6.930 22 C 0.055 3.945 23 N -0.309 5.309 24 C -0.192 4.192 25 C -0.175 4.175 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.256 0.744 34 H 0.218 0.782 35 H 0.214 0.786 36 H 0.140 0.860 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.101 -22.411 -6.068 26.659 hybrid contribution 0.082 0.841 0.480 0.972 sum -13.019 -21.570 -5.588 25.806 Atomic orbital electron populations 1.69884 1.08886 1.30341 1.36663 1.26700 0.95494 1.04385 0.91390 0.85184 0.79428 0.76386 0.78854 1.18277 1.18910 1.19238 1.19737 0.98331 0.92461 1.42355 0.90760 1.17976 0.92851 0.93150 0.90928 1.20782 1.03696 0.92315 1.05784 1.19877 0.95814 0.98019 1.00321 1.18596 0.97196 0.84441 1.03865 1.85839 1.43455 1.29519 1.65954 1.23027 0.87255 0.97394 0.95151 1.21424 0.98803 0.91425 0.85507 1.44393 1.61741 1.13213 1.12799 1.19632 0.87156 0.87479 0.85258 1.68120 1.23982 1.10659 1.27096 1.23485 0.84494 0.87906 0.98433 1.23302 1.15376 0.98411 0.99155 1.96729 1.81355 1.15766 1.99139 1.23418 0.86464 0.86491 0.98113 1.68080 1.18881 1.15066 1.28919 1.20833 1.01983 0.92245 1.04173 1.20920 0.99238 0.96942 1.00385 0.90258 0.87505 0.86540 0.89619 0.91788 0.90691 0.87574 0.74403 0.78200 0.78614 0.85982 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.25 10.96 21.82 0.24 -43.01 16 2 C 0.03 1.72 5.13 85.24 0.44 2.16 16 3 Si 0.98 38.17 29.59 68.60 2.03 40.20 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.50 -26.94 9.04 23.40 0.21 -26.72 16 8 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 9 C 0.05 2.86 5.57 -21.28 -0.12 2.75 16 10 C -0.21 -10.17 9.74 22.49 0.22 -9.95 16 11 C -0.12 -5.48 9.92 22.11 0.22 -5.26 16 12 C 0.00 0.12 6.71 22.79 0.15 0.27 16 13 O -0.33 -11.91 10.07 -89.84 -0.90 -12.82 16 14 C 0.05 1.26 4.86 71.98 0.35 1.61 16 15 C 0.15 3.35 6.03 86.38 0.52 3.87 16 16 N -0.69 -16.90 5.65 -351.02 -1.98 -18.89 16 17 C 0.56 13.95 8.43 261.47 2.20 16.16 16 18 N -0.57 -12.75 9.59 -197.90 -1.90 -14.65 16 19 C 0.23 3.79 11.08 84.73 0.94 4.73 16 20 C -0.27 -4.37 6.27 22.48 0.14 -4.23 16 21 Br -0.01 -0.16 33.76 -20.37 -0.69 -0.84 16 22 C 0.22 4.05 11.08 84.73 0.94 4.99 16 23 N -0.59 -14.12 10.46 -197.91 -2.07 -16.19 16 24 C -0.17 -7.74 8.96 22.11 0.20 -7.54 16 25 C -0.16 -8.03 8.64 22.48 0.19 -7.84 16 26 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 27 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 28 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.09 2.09 7.63 -2.39 -0.02 2.07 16 30 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.42 10.82 8.59 -92.71 -0.80 10.03 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.12 4.62 6.27 -2.91 -0.02 4.61 16 37 H 0.11 5.72 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -62.35 343.91 1.66 -60.69 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.33 Total: 30.53 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 6.61 Total: -25.02 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -5.71 Total: -92.74 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.90 Total: -12.82 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -0.69 Total: -0.84 kcal Total: -62.35 1.66 -60.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907733.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.263 kcal (2) G-P(sol) polarization free energy of solvation -62.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds