Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35999 * 117.00110 * 2 1 4 4 C 1.38563 * 120.07019 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99217 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.15194 * 0.02825 * 5 4 3 7 7 C 1.50698 * 119.93123 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47196 * 89.99801 * 7 6 5 9 9 C 1.46896 * 111.00306 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47501 * 180.02562 * 9 8 7 11 11 O 1.42900 * 109.46792 * 300.00061 * 10 9 8 12 12 C 1.52999 * 109.47000 * 180.02562 * 10 9 8 13 13 C 1.53006 * 109.46626 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47164 * 59.99702 * 13 12 10 15 15 C 1.53002 * 109.47415 * 300.00027 * 14 13 12 16 16 C 1.52996 * 109.46972 * 59.99860 * 15 14 13 17 17 C 1.38239 * 120.14581 * 0.22866 * 6 5 4 18 18 C 1.38571 * 119.99755 * 359.49344 * 17 6 5 19 19 O 1.35995 * 120.07366 * 180.25765 * 18 17 6 20 20 C 1.42902 * 116.99981 * 0.26947 * 19 18 17 21 21 C 1.53004 * 109.47101 * 180.02562 * 20 19 18 22 22 C 1.50700 * 109.47065 * 179.97438 * 21 20 19 23 23 H 1.07998 * 120.00193 * 0.02562 * 22 21 20 24 24 C 1.37873 * 119.99928 * 180.02562 * 22 21 20 25 25 N 1.31515 * 119.99957 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00111 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47045 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47372 * 120.00158 * 26 24 22 29 29 H 1.48498 * 109.47016 * 239.99982 * 26 24 22 30 30 H 1.09002 * 109.46869 * 59.99916 * 1 2 3 31 31 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47074 * 300.00445 * 1 2 3 33 33 H 1.07996 * 120.00442 * 359.95774 * 4 3 2 34 34 H 1.08001 * 119.92386 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.46885 * 329.99944 * 7 6 5 36 36 H 1.08993 * 109.47566 * 209.99972 * 7 6 5 37 37 H 1.00907 * 111.00152 * 303.95875 * 8 7 6 38 38 H 1.09004 * 109.47072 * 59.99853 * 9 8 7 39 39 H 1.09000 * 109.47017 * 299.99890 * 9 8 7 40 40 H 0.96696 * 114.00289 * 59.99717 * 11 10 9 41 41 H 1.08993 * 109.47839 * 60.00073 * 12 10 9 42 42 H 1.09000 * 109.47160 * 299.99635 * 12 10 9 43 43 H 1.09001 * 109.46998 * 179.97438 * 13 12 10 44 44 H 1.09000 * 109.47050 * 299.99699 * 13 12 10 45 45 H 1.09000 * 109.47140 * 60.00051 * 14 13 12 46 46 H 1.09001 * 109.47230 * 179.97438 * 14 13 12 47 47 H 1.08992 * 109.46974 * 180.02562 * 15 14 13 48 48 H 1.08996 * 109.46550 * 300.00288 * 15 14 13 49 49 H 1.09000 * 109.47054 * 60.00300 * 16 15 14 50 50 H 1.09001 * 109.46997 * 180.02562 * 16 15 14 51 51 H 1.08002 * 120.00538 * 179.74734 * 17 6 5 52 52 H 1.08996 * 109.47180 * 300.00471 * 20 19 18 53 53 H 1.08995 * 109.47017 * 60.00278 * 20 19 18 54 54 H 1.08996 * 109.47340 * 300.00192 * 21 20 19 55 55 H 1.09005 * 109.47035 * 60.00290 * 21 20 19 56 56 H 0.97004 * 120.00370 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9225 3.6057 0.0000 6 6 3.3030 3.6798 0.0005 7 6 3.9839 5.0242 0.0005 8 7 4.2045 5.4613 1.3854 9 6 4.8674 6.7716 1.4247 10 6 5.0804 7.1922 2.8803 11 8 3.8163 7.2779 3.5411 12 6 5.7702 8.5572 2.9210 13 6 5.9837 8.9774 4.3767 14 6 6.8605 7.9415 5.0832 15 6 6.1706 6.5764 5.0423 16 6 5.9571 6.1563 3.5867 17 6 4.0603 2.5233 -0.0043 18 6 3.4359 1.2863 0.0009 19 8 4.1795 0.1476 0.0015 20 6 5.6003 0.3005 0.0025 21 6 6.2618 -1.0791 0.0023 22 6 7.7601 -0.9178 0.0027 23 1 8.1969 0.0699 0.0034 24 6 8.5733 -2.0312 0.0021 25 7 8.0414 -3.2340 0.0007 26 14 10.4306 -1.8313 0.0033 27 1 10.7729 -0.3863 0.0054 28 1 10.9970 -2.4755 1.2155 29 1 10.9983 -2.4733 -1.2095 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2146 2.3197 -0.0016 34 1 1.3344 4.5115 0.0000 35 1 3.3542 5.7503 -0.5137 36 1 4.9421 4.9463 -0.5129 37 1 3.3376 5.4794 1.9014 38 1 4.2435 7.5097 0.9204 39 1 5.8318 6.7062 0.9210 40 1 3.3218 6.4470 3.5536 41 1 5.1459 9.2951 2.4174 42 1 6.7344 8.4923 2.4169 43 1 6.4756 9.9497 4.4058 44 1 5.0197 9.0422 4.8813 45 1 7.8245 7.8766 4.5786 46 1 7.0130 8.2410 6.1201 47 1 6.7950 5.8386 5.5460 48 1 5.2067 6.6413 5.5469 49 1 6.9211 6.0914 3.0822 50 1 5.4653 5.1840 3.5576 51 1 5.1387 2.5839 -0.0081 52 1 5.9071 0.8503 -0.8873 53 1 5.9059 0.8503 0.8926 54 1 5.9550 -1.6293 0.8918 55 1 5.9561 -1.6285 -0.8881 56 1 8.6135 -4.0174 0.0007 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071924562.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -147.373402 kcal Electronic energy + Delta-G solvation = -32963.633660 eV Core-core repulsion = 28643.254441 eV Total energy + Delta-G solvation = -4320.379219 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 363.224 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.52108 -40.61156 -39.45964 -38.49792 -36.59474 -35.62645 -35.38937 -32.63942 -32.14548 -31.69512 -30.98107 -30.40978 -28.37538 -27.09733 -26.52018 -24.77740 -23.95945 -23.48351 -22.44552 -22.04087 -21.87968 -20.66546 -19.51679 -18.63057 -18.00617 -17.61409 -17.36717 -17.14170 -16.97463 -16.53194 -16.33311 -16.22026 -15.89341 -15.60290 -15.22793 -15.09872 -15.09500 -14.94450 -14.38779 -14.32340 -14.25619 -14.12489 -13.73600 -13.54221 -13.24696 -13.12830 -13.07326 -12.97653 -12.83342 -12.68928 -12.65241 -12.52455 -12.37242 -12.17244 -11.98303 -11.90493 -11.85226 -11.66501 -11.58954 -11.58285 -11.38183 -11.37190 -10.84755 -10.62991 -10.57882 -9.64791 -9.38016 -8.71034 -8.26469 -6.40456 0.32152 0.45294 1.40442 1.41918 1.55460 2.27901 2.43627 2.52288 2.66222 3.07719 3.23984 3.35942 3.75910 3.81625 3.87195 3.90314 3.93386 4.07806 4.16535 4.20243 4.26335 4.27239 4.37835 4.38922 4.42825 4.42911 4.45565 4.55900 4.60243 4.64348 4.66436 4.70921 4.74064 4.76938 4.78838 4.81762 4.84969 4.95546 5.14014 5.18819 5.22569 5.28749 5.29521 5.30612 5.32486 5.37998 5.46362 5.49640 5.59815 5.60357 5.68484 5.80342 5.97061 6.05911 6.26075 6.40026 6.72459 6.75513 6.82787 7.29683 8.87166 Molecular weight = 363.22amu Principal moments of inertia in cm(-1) A = 0.005895 B = 0.002672 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4749.028229 B =10478.119294 C =14385.712652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.343 6.343 3 C 0.074 3.926 4 C -0.165 4.165 5 C -0.107 4.107 6 C -0.080 4.080 7 C 0.112 3.888 8 N -0.687 5.687 9 C 0.037 3.963 10 C 0.144 3.856 11 O -0.566 6.566 12 C -0.106 4.106 13 C -0.111 4.111 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.134 4.134 17 C -0.160 4.160 18 C 0.068 3.932 19 O -0.337 6.337 20 C 0.087 3.913 21 C 0.030 3.970 22 C -0.543 4.543 23 H 0.071 0.929 24 C 0.001 3.999 25 N -0.932 5.932 26 Si 0.977 3.023 27 H -0.257 1.257 28 H -0.276 1.276 29 H -0.276 1.276 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.344 0.656 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.381 0.619 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.127 0.873 52 H 0.058 0.942 53 H 0.057 0.943 54 H -0.005 1.005 55 H -0.004 1.004 56 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 26.572 4.539 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.028 3.972 4 C -0.183 4.183 5 C -0.125 4.125 6 C -0.081 4.081 7 C -0.016 4.016 8 N -0.320 5.320 9 C -0.092 4.092 10 C 0.103 3.897 11 O -0.373 6.373 12 C -0.144 4.144 13 C -0.149 4.149 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.172 4.172 17 C -0.179 4.179 18 C 0.023 3.977 19 O -0.252 6.252 20 C 0.013 3.987 21 C -0.007 4.007 22 C -0.581 4.581 23 H 0.089 0.911 24 C -0.198 4.198 25 N -0.571 5.571 26 Si 0.800 3.200 27 H -0.180 1.180 28 H -0.202 1.202 29 H -0.201 1.201 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.181 0.819 34 H 0.176 0.824 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.164 0.836 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.230 0.770 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.145 0.855 52 H 0.076 0.924 53 H 0.075 0.925 54 H 0.013 0.987 55 H 0.014 0.986 56 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.392 26.278 4.686 29.428 hybrid contribution 0.024 -0.753 -0.386 0.847 sum -12.368 25.524 4.300 28.687 Atomic orbital electron populations 1.23339 0.76488 1.05234 1.02488 1.86192 1.23466 1.26845 1.89228 1.18672 0.89032 0.86311 1.03161 1.21299 1.00937 0.90437 1.05653 1.21031 0.93328 0.97756 1.00409 1.19586 0.93575 0.94031 1.00934 1.20726 0.99752 0.91320 0.89822 1.60431 1.29972 1.28203 1.13433 1.22628 1.00068 0.89282 0.97202 1.21167 0.83730 0.95363 0.89425 1.86505 1.31929 1.39030 1.79873 1.21533 1.00331 0.94633 0.97898 1.21404 0.99925 0.98422 0.95147 1.21546 0.98675 0.94820 1.00638 1.21467 1.00606 0.96985 0.96448 1.22038 1.00279 0.98964 0.95890 1.21054 1.00573 0.90656 1.05619 1.18918 0.89402 0.86795 1.02610 1.86175 1.20296 1.29927 1.88812 1.22806 0.75905 0.99849 1.00138 1.18942 0.94835 0.91194 0.95734 1.21411 0.90998 0.93706 1.52005 0.91099 1.26067 1.05001 0.94574 0.94128 1.70141 1.37606 0.98678 1.50717 0.85222 0.77778 0.79050 0.77918 1.18022 1.20177 1.20147 0.91170 0.87347 0.91148 0.81906 0.82406 0.92139 0.90689 0.83648 0.93784 0.90240 0.77032 0.91229 0.89966 0.91226 0.92320 0.91996 0.91808 0.92650 0.92148 0.91842 0.91568 0.85473 0.92426 0.92520 0.98661 0.98592 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.39 10.28 -79.68 -0.82 -12.21 16 3 C 0.07 2.37 6.70 22.57 0.15 2.52 16 4 C -0.16 -3.63 9.04 22.35 0.20 -3.43 16 5 C -0.11 -2.02 9.69 22.27 0.22 -1.80 16 6 C -0.08 -1.83 5.39 -19.86 -0.11 -1.93 16 7 C 0.11 1.93 5.81 85.56 0.50 2.43 16 8 N -0.69 -10.95 5.71 -517.95 -2.96 -13.91 16 9 C 0.04 0.53 4.86 86.31 0.42 0.95 16 10 C 0.14 2.13 0.78 -10.79 -0.01 2.13 16 11 O -0.57 -8.83 11.59 -148.98 -1.73 -10.55 16 12 C -0.11 -1.44 4.94 30.60 0.15 -1.29 16 13 C -0.11 -1.56 5.78 30.60 0.18 -1.38 16 14 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 15 C -0.12 -1.99 5.78 30.59 0.18 -1.82 16 16 C -0.13 -2.34 4.76 30.59 0.15 -2.20 16 17 C -0.16 -4.98 8.69 22.35 0.19 -4.79 16 18 C 0.07 2.56 6.70 22.57 0.15 2.72 16 19 O -0.34 -15.71 9.92 -79.62 -0.79 -16.50 16 20 C 0.09 4.08 4.68 71.98 0.34 4.42 16 21 C 0.03 1.73 5.34 29.85 0.16 1.89 16 22 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 23 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 24 C 0.00 0.04 5.46 84.65 0.46 0.50 16 25 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 26 Si 0.98 44.32 29.54 68.60 2.03 46.35 16 27 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 29 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 30 H 0.07 1.06 7.66 -2.39 -0.02 1.05 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 1.07 7.67 -2.38 -0.02 1.05 16 33 H 0.16 2.42 6.30 -2.91 -0.02 2.40 16 34 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 36 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 37 H 0.34 4.64 7.13 -89.69 -0.64 4.00 16 38 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.38 4.45 7.46 -74.06 -0.55 3.90 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.96 7.68 -2.39 -0.02 0.94 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.08 7.68 -2.39 -0.02 1.06 16 49 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.07 1.34 7.60 -2.39 -0.02 1.32 16 51 H 0.13 4.11 6.30 -2.91 -0.02 4.09 16 52 H 0.06 2.52 7.65 -2.39 -0.02 2.50 16 53 H 0.06 2.51 7.68 -2.39 -0.02 2.49 16 54 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 55 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 56 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.26 439.68 0.55 -73.71 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.32 Total: 23.47 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 4.85 Total: -32.54 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.67 Total: -71.72 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -3.34 Total: -39.26 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -74.26 0.55 -73.71 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071924562.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.664 kcal (2) G-P(sol) polarization free energy of solvation -74.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds