Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99884 * 2 1 4 4 C 1.53005 * 109.46950 * 293.95446 * 3 2 1 5 5 H 1.08992 * 109.47434 * 54.99824 * 4 3 2 6 6 C 1.47206 * 109.46822 * 294.99600 * 4 3 2 7 7 N 3.66497 * 112.02806 * 284.54347 * 2 1 3 8 8 C 1.53001 * 109.46982 * 175.00109 * 4 3 2 9 9 C 1.50701 * 109.46924 * 184.99899 * 8 4 3 10 10 H 1.07997 * 120.00142 * 359.97438 * 9 8 4 11 11 C 1.37879 * 119.99901 * 179.72322 * 9 8 4 12 12 N 1.31512 * 119.99753 * 0.27809 * 11 9 8 13 13 Si 1.86793 * 119.99973 * 180.27291 * 11 9 8 14 14 H 1.48499 * 109.47191 * 59.99972 * 13 11 9 15 15 H 1.48500 * 109.47225 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47503 * 300.00094 * 13 11 9 17 17 C 1.46900 * 111.00040 * 123.94886 * 2 1 3 18 18 C 1.53001 * 109.47160 * 160.32062 * 17 2 1 19 19 H 1.08998 * 109.47055 * 63.95548 * 18 17 2 20 20 C 1.50699 * 109.47372 * 183.96360 * 18 17 2 21 21 C 1.33386 * 125.20169 * 249.80886 * 20 18 17 22 22 C 1.38422 * 114.92291 * 179.97438 * 21 20 18 23 23 C 1.33393 * 114.92037 * 0.02562 * 22 21 20 24 24 S 1.75882 * 125.20453 * 69.49874 * 20 18 17 25 25 N 1.46901 * 109.47029 * 303.96090 * 18 17 2 26 26 C 1.47013 * 111.00233 * 312.99061 * 25 18 17 27 27 C 1.53099 * 109.26113 * 177.60786 * 26 25 18 28 28 O 1.43011 * 109.25814 * 56.84596 * 27 26 25 29 29 C 1.43010 * 113.74112 * 301.33350 * 28 27 26 30 30 C 1.47015 * 111.00117 * 189.35526 * 25 18 17 31 31 H 1.09000 * 109.46652 * 65.33825 * 1 2 3 32 32 H 1.09001 * 109.46829 * 185.33429 * 1 2 3 33 33 H 1.08994 * 109.47659 * 305.33669 * 1 2 3 34 34 H 1.08989 * 109.47214 * 173.95261 * 3 2 1 35 35 H 1.09000 * 109.47251 * 53.94883 * 3 2 1 36 36 H 1.09004 * 109.47400 * 64.99728 * 8 4 3 37 37 H 1.09000 * 109.46952 * 304.99599 * 8 4 3 38 38 H 0.97005 * 119.99510 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.47465 * 280.32283 * 17 2 1 40 40 H 1.09004 * 109.47029 * 40.32353 * 17 2 1 41 41 H 1.08003 * 122.53829 * 359.94974 * 21 20 18 42 42 H 1.08000 * 122.54107 * 180.02562 * 22 21 20 43 43 H 1.07997 * 125.20182 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.50585 * 297.54430 * 26 25 18 45 45 H 1.09004 * 109.50594 * 57.67286 * 26 25 18 46 46 H 1.09006 * 109.50217 * 296.91551 * 27 26 25 47 47 H 1.09000 * 109.54258 * 176.80996 * 27 26 25 48 48 H 1.08997 * 109.51101 * 298.73021 * 29 28 27 49 49 H 1.09002 * 109.54504 * 178.62175 * 29 28 27 50 50 H 1.08995 * 109.50805 * 302.32834 * 30 25 18 51 51 H 1.09003 * 109.50748 * 62.41260 * 30 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 1 0.5532 2.0058 -1.4692 6 6 2.3156 1.3777 -2.4304 7 7 2.8436 0.8531 -3.2886 8 6 2.0699 3.5225 -1.2690 9 6 1.6030 4.2288 -2.5156 10 1 1.0493 3.6869 -3.2681 11 6 1.8782 5.5681 -2.6932 12 7 2.5529 6.2278 -1.7772 13 14 1.2929 6.4454 -4.2349 14 1 -0.1880 6.3697 -4.3156 15 1 1.7143 7.8685 -4.1849 16 1 1.8875 5.7954 -5.4304 17 6 1.9954 -0.7659 1.1376 18 6 3.4463 -1.1629 0.8576 19 1 4.0608 -0.2657 0.7843 20 6 3.9553 -2.0304 1.9798 21 6 4.8725 -1.6667 2.8774 22 6 5.1832 -2.6332 3.8183 23 6 4.5187 -3.7820 3.6845 24 16 3.4254 -3.6744 2.3110 25 7 3.5147 -1.9078 -0.4067 26 6 2.4745 -2.9451 -0.4641 27 6 2.5435 -3.6551 -1.8188 28 8 3.8556 -4.1934 -2.0029 29 6 4.8933 -3.2106 -1.9534 30 6 4.8481 -2.4960 -0.6002 31 1 -0.3632 0.4288 -0.9340 32 1 -0.3633 -1.0232 0.0955 33 1 -0.3634 0.5943 0.8383 34 1 3.0796 1.3445 0.1083 35 1 1.5610 1.9274 0.8309 36 1 3.1569 3.5745 -1.2073 37 1 1.6329 4.0032 -0.3937 38 1 2.7462 7.1702 -1.9020 39 1 1.9538 -0.1535 2.0384 40 1 1.3942 -1.6638 1.2806 41 1 5.3378 -0.6920 2.8703 42 1 5.9087 -2.4695 4.6015 43 1 4.6310 -4.6444 4.3249 44 1 2.6374 -3.6685 0.3347 45 1 1.4939 -2.4842 -0.3443 46 1 2.3275 -2.9423 -2.6147 47 1 1.8117 -4.4626 -1.8449 48 1 4.7458 -2.4849 -2.7533 49 1 5.8615 -3.6960 -2.0765 50 1 5.6002 -1.7075 -0.5797 51 1 5.0493 -3.2117 0.1970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072253936.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = 35.805019 kcal Electronic energy + Delta-G solvation = -31703.377583 eV Core-core repulsion = 27730.154104 eV Total energy + Delta-G solvation = -3973.223479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.18139 -38.32690 -37.80337 -36.20559 -35.11515 -33.50051 -31.83220 -31.19611 -31.05922 -28.43789 -27.32213 -26.64391 -24.92500 -24.40649 -23.61131 -22.48020 -21.63692 -21.08369 -20.23724 -19.30714 -17.58719 -16.82982 -16.52386 -16.20786 -16.17506 -15.84070 -15.38103 -15.24881 -15.05034 -14.62067 -14.57831 -14.44308 -14.14728 -13.74956 -13.25720 -13.07294 -12.91247 -12.80675 -12.64980 -12.51196 -12.39578 -12.23523 -12.02822 -11.79181 -11.72619 -11.60527 -11.49623 -11.41556 -11.11275 -10.99802 -10.88643 -10.66701 -10.59388 -10.55294 -10.48792 -10.08359 -9.69375 -9.49109 -9.21475 -8.93933 -8.70214 -8.43849 -8.27655 -8.12849 -6.08101 -4.10844 0.77165 1.40605 1.79368 2.53537 3.31879 3.36173 3.40045 3.63721 3.85095 3.88644 3.96036 4.02237 4.41896 4.54763 4.68630 4.85234 4.88817 4.97941 5.01726 5.07384 5.13929 5.19517 5.25324 5.29941 5.30421 5.35856 5.39312 5.42958 5.53195 5.56088 5.64092 5.64613 5.73198 5.77510 5.82017 5.85637 5.91998 5.98204 6.01982 6.07121 6.09595 6.26134 6.43059 6.53997 6.85986 6.92444 7.12253 7.16695 7.18833 7.44655 7.55873 7.87354 8.25647 8.74328 8.94049 9.54404 11.02809 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.013112 B = 0.002742 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.965441 B =10208.583763 C =11087.012089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.528 5.528 3 C 0.065 3.935 4 C 0.013 3.987 5 H 0.097 0.903 6 C 0.256 3.744 7 N -0.474 5.474 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.890 3.110 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.061 3.939 18 C 0.159 3.841 19 H 0.105 0.895 20 C -0.203 4.203 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.231 4.231 24 S 0.109 5.891 25 N -0.493 5.493 26 C 0.017 3.983 27 C 0.067 3.933 28 O -0.388 6.388 29 C 0.065 3.935 30 C 0.015 3.985 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.038 0.962 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -20.501 12.650 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.251 5.251 3 C -0.064 4.064 4 C -0.009 4.009 5 H 0.115 0.885 6 C -0.061 4.061 7 N -0.151 5.151 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.068 4.068 18 C 0.048 3.952 19 H 0.122 0.878 20 C -0.323 4.323 21 C -0.161 4.161 22 C -0.165 4.165 23 C -0.366 4.366 24 S 0.373 5.627 25 N -0.215 5.215 26 C -0.111 4.111 27 C -0.010 4.010 28 O -0.306 6.306 29 C -0.012 4.012 30 C -0.114 4.114 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.056 0.944 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.081 0.919 49 H 0.111 0.889 50 H 0.101 0.899 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.748 -22.209 9.886 24.321 hybrid contribution 0.491 1.911 1.831 2.692 sum 1.239 -20.297 11.718 23.470 Atomic orbital electron populations 1.22463 0.87366 1.01095 1.01753 1.61935 1.07347 1.14304 1.41508 1.22273 1.00716 0.86743 0.96647 1.19163 0.99056 0.96538 0.86161 0.88514 1.28672 0.92870 0.91051 0.93505 1.80949 1.10326 1.12044 1.11756 1.19149 0.97599 0.85581 0.98295 1.21101 1.36000 0.94688 1.04459 0.92598 1.24941 0.94973 0.97577 0.96436 1.69929 1.39538 1.09570 1.34081 0.86673 0.79247 0.78559 0.83710 1.20094 1.21235 1.20214 1.22225 0.93766 0.98298 0.92473 1.20487 0.97016 0.94877 0.82867 0.87767 1.25555 1.04200 0.98824 1.03679 1.20172 0.99260 1.01126 0.95513 1.20152 1.02251 0.93061 1.01047 1.25964 1.04486 1.02667 1.03509 1.84514 1.42304 1.11243 1.24632 1.62384 1.02836 1.24959 1.31365 1.23055 0.97741 0.92972 0.97377 1.22620 0.84556 0.97902 0.95962 1.87935 1.15286 1.34116 1.93286 1.22624 0.91017 0.91294 0.96221 1.22848 0.91730 0.98743 0.98049 0.90552 0.92130 0.95360 0.90420 0.93144 0.95702 0.94710 0.92795 0.93503 0.90809 0.84238 0.84634 0.82439 0.94425 0.88408 0.91704 0.88953 0.91854 0.88915 0.89885 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.24 60.06 0.55 0.78 16 2 N -0.53 -6.44 3.68 -242.92 -0.89 -7.33 16 3 C 0.06 0.92 4.15 -3.82 -0.02 0.90 16 4 C 0.01 0.23 2.13 -93.40 -0.20 0.03 16 5 H 0.10 1.65 6.45 -51.93 -0.33 1.32 16 6 C 0.26 5.23 13.67 -20.76 -0.28 4.95 16 7 N -0.47 -10.51 18.54 42.15 0.78 -9.73 16 8 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 9 C -0.52 -13.86 8.60 -34.44 -0.30 -14.15 16 10 H 0.06 1.47 7.59 -52.49 -0.40 1.08 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.06 0.65 3.69 -3.82 -0.01 0.63 16 18 C 0.16 1.76 2.49 -68.86 -0.17 1.59 16 19 H 0.10 1.26 6.87 -51.93 -0.36 0.90 16 20 C -0.20 -2.07 3.70 -36.00 -0.13 -2.20 16 21 C -0.13 -1.26 10.02 -41.21 -0.41 -1.67 16 22 C -0.13 -1.20 10.18 -41.21 -0.42 -1.62 16 23 C -0.23 -2.04 11.23 29.04 0.33 -1.72 16 24 S 0.11 1.05 18.99 -107.50 -2.04 -0.99 16 25 N -0.49 -5.96 4.58 -227.72 -1.04 -7.01 16 26 C 0.02 0.19 4.63 -3.71 -0.02 0.18 16 27 C 0.07 0.78 7.01 37.21 0.26 1.04 16 28 O -0.39 -5.08 10.83 -35.23 -0.38 -5.46 16 29 C 0.07 0.79 7.01 37.21 0.26 1.05 16 30 C 0.01 0.17 5.16 -3.71 -0.02 0.15 16 31 H 0.08 0.89 6.62 -51.93 -0.34 0.54 16 32 H 0.06 0.55 7.85 -51.93 -0.41 0.14 16 33 H 0.03 0.28 8.07 -51.93 -0.42 -0.14 16 34 H 0.08 1.14 6.69 -51.94 -0.35 0.79 16 35 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.05 0.48 8.00 -51.93 -0.42 0.07 16 40 H 0.07 0.73 6.14 -51.93 -0.32 0.41 16 41 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.04 0.41 4.36 -31.25 -0.14 0.27 16 45 H 0.10 1.07 5.80 -51.93 -0.30 0.77 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.05 0.54 6.23 -51.93 -0.32 0.22 16 LS Contribution 411.74 15.07 6.20 6.20 Total: -1.00 -30.50 411.74 -10.34 -40.85 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.88 Total: -0.26 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -0.80 Total: -7.82 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.42 Total: -48.75 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.04 Total: -0.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.50 -10.34 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253936.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.650 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds