Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00481 * 2 1 4 4 C 1.53006 * 109.47530 * 286.26675 * 3 2 1 5 5 H 1.08996 * 109.46879 * 307.04297 * 4 3 2 6 6 C 1.47205 * 109.46722 * 67.03581 * 4 3 2 7 7 N 3.69503 * 53.16823 * 321.42023 * 2 1 3 8 8 C 1.52999 * 109.47333 * 187.03544 * 4 3 2 9 9 C 1.50697 * 109.46835 * 174.99628 * 8 4 3 10 10 H 1.07998 * 120.00119 * 0.02562 * 9 8 4 11 11 C 1.37878 * 119.99861 * 180.02562 * 9 8 4 12 12 N 1.31513 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00027 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47156 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47156 * 119.99988 * 13 11 9 16 16 H 1.48501 * 109.46996 * 240.00044 * 13 11 9 17 17 C 1.46900 * 111.00259 * 123.95863 * 2 1 3 18 18 C 1.52996 * 109.47569 * 159.10286 * 17 2 1 19 19 H 1.09000 * 109.47108 * 58.10348 * 18 17 2 20 20 C 1.50696 * 109.47015 * 178.10020 * 18 17 2 21 21 C 1.33387 * 125.20749 * 263.41544 * 20 18 17 22 22 C 1.38417 * 114.92304 * 179.97438 * 21 20 18 23 23 C 1.33394 * 114.92580 * 0.02562 * 22 21 20 24 24 S 1.75889 * 125.19968 * 83.11662 * 20 18 17 25 25 N 1.46896 * 109.47239 * 298.10505 * 18 17 2 26 26 C 1.47011 * 111.00220 * 79.35340 * 25 18 17 27 27 C 1.53098 * 109.25846 * 177.61011 * 26 25 18 28 28 O 1.43011 * 109.26237 * 56.84588 * 27 26 25 29 29 C 1.43017 * 113.73783 * 301.33355 * 28 27 26 30 30 C 1.47018 * 111.00137 * 315.71744 * 25 18 17 31 31 H 1.09009 * 109.47110 * 72.19342 * 1 2 3 32 32 H 1.08996 * 109.47255 * 192.19727 * 1 2 3 33 33 H 1.09001 * 109.46852 * 312.19816 * 1 2 3 34 34 H 1.08998 * 109.47436 * 166.26421 * 3 2 1 35 35 H 1.09000 * 109.46917 * 46.26486 * 3 2 1 36 36 H 1.09007 * 109.46643 * 55.00174 * 8 4 3 37 37 H 1.08999 * 109.47328 * 295.00195 * 8 4 3 38 38 H 0.97000 * 120.00630 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47014 * 279.10882 * 17 2 1 40 40 H 1.09007 * 109.46612 * 39.10345 * 17 2 1 41 41 H 1.08001 * 122.53742 * 359.96399 * 21 20 18 42 42 H 1.08005 * 122.53862 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.20858 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.50686 * 297.54360 * 26 25 18 45 45 H 1.08995 * 109.50627 * 57.67652 * 26 25 18 46 46 H 1.09009 * 109.50424 * 296.91268 * 27 26 25 47 47 H 1.09006 * 109.54531 * 176.80782 * 27 26 25 48 48 H 1.08994 * 109.50663 * 298.72834 * 29 28 27 49 49 H 1.08999 * 109.53954 * 178.62552 * 29 28 27 50 50 H 1.08998 * 109.50373 * 302.33214 * 30 25 18 51 51 H 1.09006 * 109.50377 * 62.41266 * 30 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.8011 1.9924 -1.3848 5 1 2.2269 1.3334 -2.1414 6 6 0.3634 2.1728 -1.6441 7 7 -0.7461 2.3120 -1.8443 8 6 2.5033 3.3507 -1.4377 9 6 2.4172 3.9065 -2.8358 10 1 1.9118 3.3471 -3.6091 11 6 2.9836 5.1292 -3.1276 12 7 3.5994 5.8102 -2.1861 13 14 2.8762 5.8185 -4.8605 14 1 2.1367 4.8661 -5.7272 15 1 2.1606 7.1195 -4.8323 16 1 4.2455 6.0183 -5.3994 17 6 1.9955 -0.7661 1.1375 18 6 3.4363 -1.1890 0.8445 19 1 4.0434 -0.3038 0.6549 20 6 3.9919 -1.9346 2.0303 21 6 4.7427 -1.3978 2.9934 22 6 5.1384 -2.2796 3.9843 23 6 4.7096 -3.5327 3.8257 24 16 3.7435 -3.6444 2.3601 25 7 3.4599 -2.0612 -0.3373 26 6 3.3721 -1.2733 -1.5754 27 6 3.4600 -2.2142 -2.7799 28 8 2.4242 -3.1960 -2.6883 29 6 2.4799 -3.9820 -1.4948 30 6 2.3820 -3.0591 -0.2773 31 1 -0.3634 0.3143 -0.9785 32 1 -0.3633 -1.0044 0.2171 33 1 -0.3633 0.6903 0.7613 34 1 3.0577 1.3527 0.2440 35 1 1.4625 1.9651 0.7425 36 1 3.5501 3.2297 -1.1586 37 1 2.0192 4.0373 -0.7432 38 1 3.9982 6.6702 -2.3914 39 1 1.9738 -0.1464 2.0340 40 1 1.3811 -1.6528 1.2938 41 1 5.0208 -0.3543 2.9994 42 1 5.7483 -1.9760 4.8224 43 1 4.9191 -4.3522 4.4973 44 1 2.4227 -0.7385 -1.5999 45 1 4.1942 -0.5586 -1.6111 46 1 4.4312 -2.7092 -2.7850 47 1 3.3386 -1.6417 -3.6995 48 1 3.4225 -4.5284 -1.4625 49 1 1.6495 -4.6880 -1.4842 50 1 2.4814 -3.6478 0.6346 51 1 1.4167 -2.5528 -0.2802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072253937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = 43.436558 kcal Electronic energy + Delta-G solvation = -31912.711036 eV Core-core repulsion = 27939.818486 eV Total energy + Delta-G solvation = -3972.892551 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.28242 -38.34278 -37.85806 -36.37884 -34.95400 -33.75105 -31.93021 -31.30845 -31.07183 -28.27939 -27.38802 -26.61409 -24.99358 -24.20556 -23.92431 -22.45991 -21.81036 -21.06313 -19.99748 -19.31958 -17.54297 -16.93582 -16.60162 -16.34371 -16.07210 -15.77691 -15.47209 -15.20197 -15.04532 -14.94144 -14.60541 -14.41185 -13.85409 -13.68431 -13.37965 -13.21914 -12.86743 -12.78071 -12.57152 -12.53196 -12.46292 -12.26887 -12.18681 -12.10702 -11.96488 -11.63560 -11.45593 -11.28542 -11.08410 -11.01426 -10.81578 -10.78012 -10.71471 -10.48574 -10.37927 -10.31119 -9.62036 -9.58787 -9.27344 -8.88518 -8.74025 -8.55947 -8.49600 -7.85171 -6.13592 -4.16826 0.88908 1.52107 1.91824 2.62755 3.26129 3.34785 3.39169 3.52394 3.59088 3.73696 3.76911 3.96382 4.37869 4.57880 4.70697 4.77097 4.92262 4.99579 5.00064 5.06926 5.14229 5.19647 5.22935 5.24904 5.35744 5.39319 5.44940 5.48058 5.48739 5.53377 5.60800 5.61998 5.67336 5.73928 5.83327 5.95102 5.96745 6.01459 6.05442 6.16723 6.24586 6.35841 6.42105 6.50871 6.85144 6.92089 6.97295 7.00988 7.19725 7.36503 7.46413 7.81474 8.18178 8.35927 8.87914 9.49224 10.97219 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.002918 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.592924 B = 9592.379518 C =10292.193342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.536 5.536 3 C 0.058 3.942 4 C 0.010 3.990 5 H 0.109 0.891 6 C 0.249 3.751 7 N -0.479 5.479 8 C 0.033 3.967 9 C -0.525 4.525 10 H 0.057 0.943 11 C 0.063 3.937 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.024 3.976 18 C 0.156 3.844 19 H 0.106 0.894 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.237 4.237 24 S 0.115 5.885 25 N -0.518 5.518 26 C -0.001 4.001 27 C 0.064 3.936 28 O -0.384 6.384 29 C 0.068 3.932 30 C 0.014 3.986 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.157 0.843 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.098 0.902 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -20.833 11.246 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.260 5.260 3 C -0.071 4.071 4 C -0.012 4.012 5 H 0.127 0.873 6 C -0.067 4.067 7 N -0.156 5.156 8 C -0.006 4.006 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.530 5.530 13 Si 0.718 3.282 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.105 4.105 18 C 0.045 3.955 19 H 0.123 0.877 20 C -0.269 4.269 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.372 4.372 24 S 0.379 5.621 25 N -0.242 5.242 26 C -0.129 4.129 27 C -0.013 4.013 28 O -0.302 6.302 29 C -0.009 4.009 30 C -0.115 4.115 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.175 0.825 44 H 0.120 0.880 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.091 0.909 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.196 -22.146 9.687 24.202 hybrid contribution 0.502 2.472 1.043 2.730 sum 1.697 -19.674 10.730 22.474 Atomic orbital electron populations 1.22716 0.87034 1.00956 1.02728 1.62162 1.08055 1.14439 1.41300 1.22408 1.01114 0.86811 0.96741 1.19328 0.83191 1.02218 0.96500 0.87296 1.29114 0.94854 0.90662 0.92059 1.81050 1.13636 1.11123 1.09778 1.19164 0.95733 0.87416 0.98255 1.21151 1.36132 1.04071 0.94993 0.92434 1.24941 0.94975 0.96805 0.97161 1.69939 1.36458 1.14025 1.32529 0.86555 0.77848 0.79103 0.84711 1.19626 1.21026 1.20789 1.22887 0.96305 0.98494 0.92850 1.20150 0.94654 0.94185 0.86519 0.87669 1.24372 1.05219 0.96659 1.00660 1.20089 1.00642 1.01454 0.94886 1.20106 1.02841 0.92640 1.00642 1.25914 1.06896 1.01201 1.03209 1.84223 1.51028 1.07986 1.18847 1.62513 1.44514 1.15251 1.01920 1.23258 1.05528 0.96124 0.87960 1.22710 0.90447 0.89738 0.98384 1.87990 1.52273 1.49901 1.40025 1.22552 1.01784 0.92700 0.83912 1.22962 0.94952 0.95116 0.98512 0.90079 0.92036 0.95258 0.89057 0.93668 0.94296 0.95821 0.92832 0.93467 0.90344 0.84281 0.84754 0.82535 0.87973 0.89868 0.93150 0.88388 0.92710 0.89053 0.90908 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.73 60.06 0.52 0.70 16 2 N -0.54 -6.42 1.44 -242.92 -0.35 -6.77 16 3 C 0.06 0.78 4.30 -3.82 -0.02 0.77 16 4 C 0.01 0.17 2.33 -93.40 -0.22 -0.05 16 5 H 0.11 1.80 7.26 -51.93 -0.38 1.42 16 6 C 0.25 4.84 10.88 -20.76 -0.23 4.62 16 7 N -0.48 -10.08 17.72 42.15 0.75 -9.33 16 8 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 9 C -0.53 -13.53 8.60 -34.44 -0.30 -13.83 16 10 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 C 0.02 0.25 3.68 -3.83 -0.01 0.24 16 18 C 0.16 1.61 2.38 -68.87 -0.16 1.45 16 19 H 0.11 1.13 6.49 -51.93 -0.34 0.80 16 20 C -0.15 -1.52 5.47 -36.01 -0.20 -1.72 16 21 C -0.14 -1.36 10.04 -41.21 -0.41 -1.77 16 22 C -0.13 -1.18 10.18 -41.21 -0.42 -1.60 16 23 C -0.24 -2.06 11.23 29.04 0.33 -1.73 16 24 S 0.12 1.06 19.74 -107.50 -2.12 -1.06 16 25 N -0.52 -5.59 4.55 -227.73 -1.04 -6.63 16 26 C 0.00 -0.01 5.25 -3.71 -0.02 -0.03 16 27 C 0.06 0.74 7.01 37.21 0.26 1.00 16 28 O -0.38 -4.88 10.83 -35.23 -0.38 -5.26 16 29 C 0.07 0.69 7.01 37.20 0.26 0.95 16 30 C 0.01 0.14 4.39 -3.71 -0.02 0.12 16 31 H 0.08 1.24 5.01 -51.92 -0.26 0.98 16 32 H 0.06 0.69 7.67 -51.93 -0.40 0.30 16 33 H 0.03 0.39 7.84 -51.93 -0.41 -0.02 16 34 H 0.09 1.13 6.56 -51.93 -0.34 0.79 16 35 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.05 0.50 7.98 -51.93 -0.41 0.08 16 40 H 0.08 0.80 5.75 -51.93 -0.30 0.50 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 44 H 0.10 1.33 4.32 -51.93 -0.22 1.10 16 45 H 0.08 0.96 8.02 -51.93 -0.42 0.55 16 46 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 47 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.07 0.68 4.43 -31.91 -0.14 0.54 16 51 H 0.06 0.67 6.11 -51.93 -0.32 0.36 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -29.30 403.94 -9.86 -39.16 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.68 Total: 0.72 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.85 Total: -8.67 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.10 Total: -46.91 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.38 Total: -5.26 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.12 Total: -1.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.30 -9.86 -39.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.596 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds