Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00481 * 2 1 4 4 C 1.53006 * 109.47530 * 286.26675 * 3 2 1 5 5 H 1.08996 * 109.46879 * 307.04297 * 4 3 2 6 6 C 1.47205 * 109.46722 * 67.03581 * 4 3 2 7 7 N 3.69503 * 53.16823 * 321.42023 * 2 1 3 8 8 C 1.52999 * 109.47333 * 187.03544 * 4 3 2 9 9 C 1.50697 * 109.46835 * 174.99628 * 8 4 3 10 10 H 1.07998 * 120.00119 * 0.02562 * 9 8 4 11 11 C 1.37878 * 119.99861 * 180.02562 * 9 8 4 12 12 N 1.31513 * 120.00146 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00027 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47156 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47156 * 119.99988 * 13 11 9 16 16 H 1.48501 * 109.46996 * 240.00044 * 13 11 9 17 17 C 1.46900 * 111.00259 * 123.95863 * 2 1 3 18 18 C 1.52996 * 109.47569 * 159.10286 * 17 2 1 19 19 H 1.09000 * 109.47108 * 58.10348 * 18 17 2 20 20 C 1.50696 * 109.47015 * 178.10020 * 18 17 2 21 21 C 1.33387 * 125.20749 * 263.41544 * 20 18 17 22 22 C 1.38417 * 114.92304 * 179.97438 * 21 20 18 23 23 C 1.33394 * 114.92580 * 0.02562 * 22 21 20 24 24 S 1.75889 * 125.19968 * 83.11662 * 20 18 17 25 25 N 1.46896 * 109.47239 * 298.10505 * 18 17 2 26 26 C 1.47011 * 111.00220 * 79.35340 * 25 18 17 27 27 C 1.53098 * 109.25846 * 177.61011 * 26 25 18 28 28 O 1.43011 * 109.26237 * 56.84588 * 27 26 25 29 29 C 1.43017 * 113.73783 * 301.33355 * 28 27 26 30 30 C 1.47018 * 111.00137 * 315.71744 * 25 18 17 31 31 H 1.09009 * 109.47110 * 72.19342 * 1 2 3 32 32 H 1.08996 * 109.47255 * 192.19727 * 1 2 3 33 33 H 1.09001 * 109.46852 * 312.19816 * 1 2 3 34 34 H 1.08998 * 109.47436 * 166.26421 * 3 2 1 35 35 H 1.09000 * 109.46917 * 46.26486 * 3 2 1 36 36 H 1.09007 * 109.46643 * 55.00174 * 8 4 3 37 37 H 1.08999 * 109.47328 * 295.00195 * 8 4 3 38 38 H 0.97000 * 120.00630 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.47014 * 279.10882 * 17 2 1 40 40 H 1.09007 * 109.46612 * 39.10345 * 17 2 1 41 41 H 1.08001 * 122.53742 * 359.96399 * 21 20 18 42 42 H 1.08005 * 122.53862 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.20858 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.50686 * 297.54360 * 26 25 18 45 45 H 1.08995 * 109.50627 * 57.67652 * 26 25 18 46 46 H 1.09009 * 109.50424 * 296.91268 * 27 26 25 47 47 H 1.09006 * 109.54531 * 176.80782 * 27 26 25 48 48 H 1.08994 * 109.50663 * 298.72834 * 29 28 27 49 49 H 1.08999 * 109.53954 * 178.62552 * 29 28 27 50 50 H 1.08998 * 109.50373 * 302.33214 * 30 25 18 51 51 H 1.09006 * 109.50377 * 62.41266 * 30 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.8011 1.9924 -1.3848 5 1 2.2269 1.3334 -2.1414 6 6 0.3634 2.1728 -1.6441 7 7 -0.7461 2.3120 -1.8443 8 6 2.5033 3.3507 -1.4377 9 6 2.4172 3.9065 -2.8358 10 1 1.9118 3.3471 -3.6091 11 6 2.9836 5.1292 -3.1276 12 7 3.5994 5.8102 -2.1861 13 14 2.8762 5.8185 -4.8605 14 1 2.1367 4.8661 -5.7272 15 1 2.1606 7.1195 -4.8323 16 1 4.2455 6.0183 -5.3994 17 6 1.9955 -0.7661 1.1375 18 6 3.4363 -1.1890 0.8445 19 1 4.0434 -0.3038 0.6549 20 6 3.9919 -1.9346 2.0303 21 6 4.7427 -1.3978 2.9934 22 6 5.1384 -2.2796 3.9843 23 6 4.7096 -3.5327 3.8257 24 16 3.7435 -3.6444 2.3601 25 7 3.4599 -2.0612 -0.3373 26 6 3.3721 -1.2733 -1.5754 27 6 3.4600 -2.2142 -2.7799 28 8 2.4242 -3.1960 -2.6883 29 6 2.4799 -3.9820 -1.4948 30 6 2.3820 -3.0591 -0.2773 31 1 -0.3634 0.3143 -0.9785 32 1 -0.3633 -1.0044 0.2171 33 1 -0.3633 0.6903 0.7613 34 1 3.0577 1.3527 0.2440 35 1 1.4625 1.9651 0.7425 36 1 3.5501 3.2297 -1.1586 37 1 2.0192 4.0373 -0.7432 38 1 3.9982 6.6702 -2.3914 39 1 1.9738 -0.1464 2.0340 40 1 1.3811 -1.6528 1.2938 41 1 5.0208 -0.3543 2.9994 42 1 5.7483 -1.9760 4.8224 43 1 4.9191 -4.3522 4.4973 44 1 2.4227 -0.7385 -1.5999 45 1 4.1942 -0.5586 -1.6111 46 1 4.4312 -2.7092 -2.7850 47 1 3.3386 -1.6417 -3.6995 48 1 3.4225 -4.5284 -1.4625 49 1 1.6495 -4.6880 -1.4842 50 1 2.4814 -3.6478 0.6346 51 1 1.4167 -2.5528 -0.2802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072253937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = 27.476551 kcal Electronic energy + Delta-G solvation = -31913.403114 eV Core-core repulsion = 27939.818486 eV Total energy + Delta-G solvation = -3973.584628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.18393 -39.41560 -38.70028 -37.52690 -36.12012 -35.51117 -33.54598 -32.26806 -31.89023 -29.15996 -28.90232 -27.55314 -26.23995 -25.09728 -24.87603 -23.68577 -23.22512 -22.03824 -20.86299 -20.02358 -18.65407 -18.37054 -18.06385 -17.34832 -17.02063 -16.72101 -16.47639 -16.30906 -16.16279 -15.98637 -15.84174 -15.33538 -14.91771 -14.89203 -14.64563 -14.24230 -14.12789 -13.91019 -13.87411 -13.67277 -13.52396 -13.38845 -13.26473 -13.06837 -13.02125 -12.90995 -12.67334 -12.59838 -12.45942 -12.36214 -12.14197 -12.07511 -11.96278 -11.73810 -11.51512 -11.33577 -11.16636 -11.09678 -10.54614 -10.49282 -9.81183 -9.48244 -9.24901 -8.76961 -8.18881 -6.26296 0.18944 0.83036 1.22746 1.38953 1.42863 1.52507 1.93250 1.96697 2.00051 2.41627 2.75549 2.90930 3.13489 3.16579 3.25038 3.71754 3.92705 4.03015 4.14463 4.19799 4.25340 4.30155 4.31213 4.35969 4.37774 4.41882 4.49651 4.58994 4.62248 4.67525 4.72244 4.74186 4.81374 4.83269 4.87072 4.89819 4.93858 4.96420 5.03521 5.13640 5.33183 5.46545 5.49679 5.52331 5.62309 5.67707 5.79596 5.87347 5.91912 6.10896 6.11420 6.21648 6.34001 6.77074 6.88659 7.42390 8.92016 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.002918 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.592924 B = 9592.379518 C =10292.193342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.069 3.931 4 C 0.022 3.978 5 H 0.121 0.879 6 C 0.258 3.742 7 N -0.508 5.508 8 C 0.041 3.959 9 C -0.534 4.534 10 H 0.053 0.947 11 C 0.014 3.986 12 N -0.922 5.922 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.031 3.969 18 C 0.161 3.839 19 H 0.101 0.899 20 C -0.167 4.167 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.236 4.236 24 S 0.115 5.885 25 N -0.519 5.519 26 C 0.002 3.998 27 C 0.064 3.936 28 O -0.404 6.404 29 C 0.064 3.936 30 C 0.018 3.982 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.038 0.962 37 H -0.002 1.002 38 H 0.263 0.737 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.177 0.823 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.098 0.902 48 H 0.059 0.941 49 H 0.107 0.893 50 H 0.083 0.917 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -22.407 11.944 25.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.254 5.254 3 C -0.060 4.060 4 C 0.000 4.000 5 H 0.138 0.862 6 C -0.058 4.058 7 N -0.185 5.185 8 C 0.002 3.998 9 C -0.573 4.573 10 H 0.071 0.929 11 C -0.185 4.185 12 N -0.562 5.562 13 Si 0.770 3.230 14 H -0.194 1.194 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.098 4.098 18 C 0.050 3.950 19 H 0.119 0.881 20 C -0.285 4.285 21 C -0.176 4.176 22 C -0.173 4.173 23 C -0.371 4.371 24 S 0.378 5.622 25 N -0.243 5.243 26 C -0.125 4.125 27 C -0.013 4.013 28 O -0.322 6.322 29 C -0.012 4.012 30 C -0.111 4.111 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.194 0.806 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.077 0.923 49 H 0.125 0.875 50 H 0.101 0.899 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.835 -23.738 10.385 25.976 hybrid contribution 0.315 2.901 0.876 3.046 sum 2.150 -20.838 11.261 23.783 Atomic orbital electron populations 1.22612 0.87437 1.01760 1.01093 1.62095 1.07593 1.13357 1.42375 1.22238 1.02219 0.87508 0.94027 1.19225 0.81375 1.00126 0.99238 0.86150 1.29496 0.95211 0.89871 0.91177 1.81042 1.14641 1.11952 1.10913 1.18970 0.95909 0.89195 0.95734 1.21536 1.35158 1.04056 0.96520 0.92922 1.25645 0.95081 0.97444 1.00296 1.70023 1.37584 1.14463 1.34101 0.85715 0.78108 0.78126 0.81062 1.19433 1.21339 1.19800 1.22867 0.96507 0.98350 0.92097 1.20076 0.94312 0.94088 0.86563 0.88110 1.24352 1.06088 0.97266 1.00798 1.20306 1.00308 1.02034 0.94932 1.20335 1.03233 0.92667 1.01088 1.26212 1.06123 1.01795 1.02975 1.84146 1.51278 1.07369 1.19379 1.62519 1.44796 1.15278 1.01716 1.23166 1.04700 0.96144 0.88531 1.22730 0.90481 0.89696 0.98404 1.87961 1.52722 1.50328 1.41237 1.22713 1.02745 0.92691 0.83098 1.22940 0.94222 0.94953 0.99012 0.92431 0.90283 0.95833 0.87387 0.94095 0.94334 0.98322 0.92767 0.93123 0.89724 0.83699 0.83103 0.80559 0.89276 0.89948 0.92674 0.88368 0.92300 0.87451 0.89896 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 8.73 127.69 1.12 1.60 16 2 N -0.53 -12.09 1.44 -922.46 -1.33 -13.42 16 3 C 0.07 1.81 4.30 86.31 0.37 2.18 16 4 C 0.02 0.76 2.33 -12.60 -0.03 0.73 16 5 H 0.12 3.89 7.26 -2.39 -0.02 3.87 16 6 C 0.26 10.04 10.88 89.44 0.97 11.01 16 7 N -0.51 -21.51 17.72 20.01 0.35 -21.16 16 8 C 0.04 1.80 4.42 29.85 0.13 1.93 16 9 C -0.53 -27.58 8.60 25.60 0.22 -27.36 16 10 H 0.05 2.72 7.59 -2.91 -0.02 2.70 16 11 C 0.01 0.77 5.46 84.66 0.46 1.24 16 12 N -0.92 -51.86 13.29 21.45 0.28 -51.58 16 13 Si 0.94 42.92 29.54 68.60 2.03 44.94 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.03 0.60 3.68 86.30 0.32 0.91 16 18 C 0.16 3.06 2.38 44.17 0.11 3.17 16 19 H 0.10 2.01 6.49 -2.39 -0.02 2.00 16 20 C -0.17 -3.06 5.47 24.59 0.13 -2.93 16 21 C -0.14 -2.54 10.04 21.21 0.21 -2.33 16 22 C -0.14 -2.24 10.18 21.22 0.22 -2.03 16 23 C -0.24 -3.52 11.23 66.72 0.75 -2.77 16 24 S 0.11 1.87 19.74 -56.49 -1.12 0.75 16 25 N -0.52 -10.44 4.55 -874.41 -3.97 -14.42 16 26 C 0.00 0.05 5.25 86.31 0.45 0.51 16 27 C 0.06 1.41 7.01 72.01 0.50 1.92 16 28 O -0.40 -9.84 10.83 -148.98 -1.61 -11.45 16 29 C 0.06 1.21 7.01 72.01 0.50 1.72 16 30 C 0.02 0.33 4.39 86.31 0.38 0.71 16 31 H 0.06 1.73 5.01 -2.38 -0.01 1.72 16 32 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 33 H 0.02 0.60 7.84 -2.39 -0.02 0.58 16 34 H 0.11 2.51 6.56 -2.39 -0.02 2.49 16 35 H 0.04 1.13 7.81 -2.39 -0.02 1.11 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.05 0.97 7.98 -2.39 -0.02 0.95 16 40 H 0.08 1.56 5.75 -2.38 -0.01 1.55 16 41 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 42 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 43 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.09 2.22 4.32 -2.39 -0.01 2.21 16 45 H 0.08 1.82 8.02 -2.39 -0.02 1.80 16 46 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.08 1.39 4.43 -15.12 -0.07 1.32 16 51 H 0.05 1.06 6.11 -2.38 -0.01 1.05 16 Total: -1.00 -61.85 403.94 2.34 -59.51 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.88 Total: 16.62 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 6.82 Total: -9.81 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.66 Total: -100.57 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -1.61 Total: -11.45 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.12 Total: 0.75 kcal Total: -61.85 2.34 -59.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072253937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.985 kcal (2) G-P(sol) polarization free energy of solvation -61.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds