Wall clock time and date at job start Tue Mar 31 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86806 * 119.99784 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00003 * 3 2 1 5 5 H 1.48504 * 109.46872 * 30.00385 * 3 2 1 6 6 H 1.48497 * 109.46958 * 149.99818 * 3 2 1 7 7 C 1.38646 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00192 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.35762 * 117.00331 * 185.03701 * 9 7 2 11 11 C 1.38878 * 120.06552 * 354.66646 * 10 9 7 12 12 C 1.38102 * 119.92763 * 180.02562 * 11 10 9 13 13 C 1.38294 * 120.06612 * 0.02562 * 12 11 10 14 14 C 1.50709 * 119.92769 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46964 * 90.00450 * 14 13 12 16 16 O 1.21292 * 119.99762 * 359.97438 * 15 14 13 17 17 N 1.34770 * 120.00198 * 180.02562 * 15 14 13 18 18 C 1.39862 * 120.00073 * 184.51371 * 17 15 14 19 19 C 1.38959 * 119.94992 * 324.61170 * 18 17 15 20 20 C 1.37887 * 120.04824 * 179.72648 * 19 18 17 21 21 C 1.39374 * 119.94836 * 0.57106 * 20 19 18 22 22 C 1.48397 * 120.04884 * 179.68227 * 21 20 19 23 23 C 1.40856 * 126.03961 * 359.73691 * 22 21 20 24 24 C 1.35086 * 107.84905 * 179.82308 * 23 22 21 25 25 N 1.35034 * 107.97978 * 0.43305 * 24 23 22 26 26 H 0.97005 * 125.93453 * 179.72298 * 25 24 23 27 27 N 1.31633 * 126.04158 * 180.02562 * 22 21 20 28 28 C 1.39378 * 119.90236 * 359.69899 * 21 20 19 29 29 C 1.37875 * 119.94912 * 0.02562 * 28 21 20 30 30 C 1.38298 * 120.14385 * 0.25344 * 13 12 11 31 31 C 1.38097 * 120.06862 * 359.45039 * 30 13 12 32 32 H 0.97001 * 120.00438 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.03566 * 359.97438 * 11 10 9 34 34 H 1.07994 * 119.96129 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.47255 * 209.99812 * 14 13 12 36 36 H 1.08997 * 109.47137 * 330.00413 * 14 13 12 37 37 H 0.97002 * 120.00132 * 4.51455 * 17 15 14 38 38 H 1.07995 * 119.97969 * 359.97438 * 19 18 17 39 39 H 1.08001 * 120.02642 * 180.29608 * 20 19 18 40 40 H 1.08003 * 126.07665 * 359.97438 * 23 22 21 41 41 H 1.07997 * 126.01378 * 180.13497 * 24 23 22 42 42 H 1.07999 * 120.02124 * 180.02562 * 28 21 20 43 43 H 1.08004 * 119.97702 * 179.97438 * 29 28 21 44 44 H 1.07999 * 119.97042 * 179.70237 * 30 13 12 45 45 H 1.07993 * 120.03928 * 180.27234 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4403 0.7001 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3683 -0.0005 10 6 2.0702 -3.5046 0.1051 11 6 3.4574 -3.4390 0.0954 12 6 4.2027 -4.5966 0.2026 13 6 3.5691 -5.8204 0.3189 14 6 4.3855 -7.0818 0.4350 15 6 4.6611 -7.3698 1.8884 16 8 4.2367 -6.6237 2.7454 17 7 5.3799 -8.4555 2.2357 18 6 5.5559 -8.7751 3.5859 19 6 5.6888 -7.7614 4.5271 20 6 5.8568 -8.0741 5.8595 21 6 5.9052 -9.4081 6.2604 22 6 6.0930 -9.7471 7.6929 23 6 6.2407 -8.8277 8.7497 24 6 6.3833 -9.5314 9.8939 25 7 6.3390 -10.8449 9.5837 26 1 6.4196 -11.5809 10.2104 27 7 6.1562 -10.9603 8.1998 28 6 5.7773 -10.4231 5.3139 29 6 5.6038 -10.1058 3.9834 30 6 2.1878 -5.8896 0.3230 31 6 1.4369 -4.7350 0.2224 32 1 -0.4851 0.8400 0.0004 33 1 3.9528 -2.4837 0.0034 34 1 5.2815 -4.5462 0.1955 35 1 3.8329 -7.9137 -0.0017 36 1 5.3291 -6.9540 -0.0954 37 1 5.7752 -9.0155 1.5493 38 1 5.6565 -6.7280 4.2154 39 1 5.9553 -7.2860 6.5913 40 1 6.2378 -7.7513 8.6612 41 1 6.5148 -9.1166 10.8823 42 1 5.8141 -11.4575 5.6225 43 1 5.5050 -10.8920 3.2496 44 1 1.6959 -6.8471 0.4091 45 1 0.3583 -4.7892 0.2301 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072277421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:31 Heat of formation + Delta-G solvation = 43.140350 kcal Electronic energy + Delta-G solvation = -29410.569219 eV Core-core repulsion = 25166.386778 eV Total energy + Delta-G solvation = -4244.182441 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08577 -41.52619 -40.67439 -39.45262 -38.16462 -35.91327 -34.39648 -33.35634 -32.61507 -32.07041 -31.75827 -30.81430 -29.95490 -28.10177 -26.98555 -24.59117 -23.88159 -23.61994 -22.62068 -22.01869 -21.15514 -20.90920 -19.83353 -19.12026 -18.93967 -18.61305 -17.94199 -16.85262 -16.57257 -16.37607 -16.14831 -15.95746 -15.63199 -15.59199 -15.45326 -15.31715 -14.94864 -14.73631 -14.43191 -14.40861 -14.30972 -14.17917 -13.88231 -13.78005 -13.58154 -12.96278 -12.95524 -12.78059 -12.46856 -12.35366 -12.28793 -12.22689 -12.11985 -11.74006 -11.55236 -11.16194 -10.89353 -10.73640 -10.51078 -9.89994 -9.75742 -9.74331 -8.90364 -8.81491 -8.46512 -6.14706 -0.09424 0.46746 0.63621 0.68030 1.06551 1.34373 1.43987 1.52426 1.59927 1.95633 2.00009 2.15954 2.18621 2.85693 2.98042 3.18433 3.53858 3.55097 3.78821 3.85829 4.04260 4.06971 4.07954 4.18902 4.22789 4.39905 4.45055 4.51133 4.59818 4.64054 4.66706 4.74423 4.80816 4.82591 4.94606 5.08685 5.11942 5.15907 5.25600 5.32460 5.37563 5.49862 5.56139 5.58538 5.66494 5.73500 5.79162 6.03943 6.04114 6.24928 6.46103 6.53258 6.67112 6.98052 7.25786 7.79684 8.76945 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.001660 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.607960 B =16859.477557 C =18265.808384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.235 6.235 10 C 0.112 3.888 11 C -0.245 4.245 12 C -0.058 4.058 13 C -0.147 4.147 14 C -0.073 4.073 15 C 0.510 3.490 16 O -0.554 6.554 17 N -0.661 5.661 18 C 0.148 3.852 19 C -0.142 4.142 20 C -0.081 4.081 21 C -0.050 4.050 22 C 0.100 3.900 23 C -0.289 4.289 24 C 0.078 3.922 25 N -0.469 5.469 26 H 0.454 0.546 27 N -0.321 5.321 28 C -0.079 4.079 29 C -0.138 4.138 30 C -0.057 4.057 31 C -0.208 4.208 32 H 0.272 0.728 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.431 0.569 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.222 0.778 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.147 0.853 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.715 -25.248 13.061 34.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.264 4.264 12 C -0.076 4.076 13 C -0.148 4.148 14 C -0.112 4.112 15 C 0.299 3.701 16 O -0.430 6.430 17 N -0.309 5.309 18 C 0.053 3.947 19 C -0.162 4.162 20 C -0.101 4.101 21 C -0.053 4.053 22 C -0.063 4.063 23 C -0.318 4.318 24 C -0.070 4.070 25 N -0.179 5.179 26 H 0.301 0.699 27 N -0.146 5.146 28 C -0.099 4.099 29 C -0.158 4.158 30 C -0.075 4.075 31 C -0.227 4.227 32 H 0.081 0.919 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.271 0.729 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.176 0.824 41 H 0.239 0.761 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.164 0.836 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.947 -25.779 13.367 34.137 hybrid contribution -0.025 1.539 0.365 1.582 sum 17.922 -24.240 13.732 33.126 Atomic orbital electron populations 1.70189 1.08029 1.28756 1.49014 1.26613 0.96890 1.02772 0.95899 0.84581 0.77721 0.74485 0.79360 1.18494 1.19576 1.17832 1.21823 0.92501 0.81505 1.53169 0.88206 1.83937 1.36012 1.12626 1.81572 1.19958 0.91724 0.87934 0.94203 1.21234 0.93065 1.00096 1.12009 1.20948 0.99778 0.91037 0.95795 1.19235 0.93254 0.94543 1.07803 1.20542 1.03107 0.96609 0.90979 1.21494 0.76330 0.79586 0.92665 1.90773 1.51270 1.47830 1.53150 1.43460 1.52567 1.28912 1.05922 1.18006 0.98596 0.93505 0.84608 1.21215 1.01974 0.99822 0.93182 1.21104 0.97822 0.95553 0.95598 1.17954 1.04589 0.93580 0.89142 1.20905 1.00009 0.91334 0.94048 1.21871 1.16939 1.01549 0.91467 1.23179 0.98455 0.83720 1.01618 1.46382 1.57498 1.07995 1.06026 0.69938 1.77399 1.25909 1.21286 0.90036 1.21168 0.97312 0.99392 0.92023 1.21079 1.03629 0.94425 0.96701 1.20888 0.93611 0.96882 0.96077 1.20440 0.99861 0.90762 1.11657 0.91865 0.86533 0.84158 0.84531 0.84597 0.72863 0.85973 0.84545 0.82426 0.76149 0.84375 0.82149 0.83563 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.13 13.67 21.61 0.30 -57.83 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.41 -25.01 9.49 67.92 0.64 -24.36 16 8 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 9 O -0.23 -14.74 9.76 -22.79 -0.22 -14.96 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -11.15 9.17 22.39 0.21 -10.95 16 12 C -0.06 -2.02 9.69 22.25 0.22 -1.81 16 13 C -0.15 -4.50 4.38 -19.83 -0.09 -4.59 16 14 C -0.07 -1.29 5.83 29.11 0.17 -1.12 16 15 C 0.51 11.55 7.66 87.66 0.67 12.22 16 16 O -0.55 -18.98 13.48 -3.07 -0.04 -19.02 16 17 N -0.66 -10.40 5.33 -303.42 -1.62 -12.02 16 18 C 0.15 3.00 6.29 38.21 0.24 3.24 16 19 C -0.14 -3.53 8.68 22.36 0.19 -3.33 16 20 C -0.08 -1.83 9.57 22.46 0.21 -1.61 16 21 C -0.05 -1.10 5.88 -20.02 -0.12 -1.21 16 22 C 0.10 2.14 6.99 42.52 0.30 2.44 16 23 C -0.29 -4.78 10.17 22.18 0.23 -4.55 16 24 C 0.08 0.79 11.97 83.47 1.00 1.79 16 25 N -0.47 -5.74 7.35 -57.68 -0.42 -6.16 16 26 H 0.45 2.24 8.96 -213.33 -1.91 0.33 16 27 N -0.32 -6.57 12.36 -48.16 -0.60 -7.17 16 28 C -0.08 -1.50 9.68 22.46 0.22 -1.29 16 29 C -0.14 -2.25 9.95 22.36 0.22 -2.02 16 30 C -0.06 -1.96 9.69 22.25 0.22 -1.74 16 31 C -0.21 -9.35 9.99 22.39 0.22 -9.13 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 34 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 35 H 0.14 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.14 1.47 8.08 -2.39 -0.02 1.45 16 37 H 0.43 2.83 8.82 -92.71 -0.82 2.02 16 38 H 0.12 3.59 6.24 -2.91 -0.02 3.57 16 39 H 0.14 2.70 7.03 -2.91 -0.02 2.68 16 40 H 0.16 2.20 7.33 -2.91 -0.02 2.17 16 41 H 0.22 0.12 8.06 -2.91 -0.02 0.09 16 42 H 0.14 2.37 7.85 -2.91 -0.02 2.34 16 43 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 45 H 0.11 4.93 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -91.08 391.87 3.14 -87.94 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -1.65 Total: 26.05 kcal Atomic # 6 Polarization: -48.36 SS G_CDS: 5.37 Total: -42.99 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.34 Total: -83.18 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.26 Total: -33.98 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -91.08 3.14 -87.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072277421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.083 kcal (2) G-P(sol) polarization free energy of solvation -91.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds