Wall clock time and date at job start Tue Mar 31 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35899 * 117.00133 * 2 1 4 4 C 1.38805 * 120.02342 * 0.02562 * 3 2 1 5 5 C 1.38164 * 120.08559 * 180.02562 * 4 3 2 6 6 C 1.38167 * 120.12548 * 359.94667 * 5 4 3 7 7 C 1.38877 * 120.04129 * 0.05190 * 6 5 4 8 8 N 1.39938 * 120.04348 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00037 * 324.87840 * 8 7 6 10 10 O 1.21585 * 119.99985 * 4.58611 * 9 8 7 11 11 N 1.34773 * 119.99822 * 184.58748 * 9 8 7 12 12 C 1.46505 * 120.00401 * 0.02562 * 11 9 8 13 13 C 1.50695 * 109.47073 * 89.99958 * 12 11 9 14 14 H 1.08002 * 120.00246 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99866 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99756 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47180 * 59.99376 * 17 15 13 19 19 H 1.48497 * 109.47262 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47130 * 299.99313 * 17 15 13 21 21 C 1.46504 * 119.99952 * 180.02562 * 11 9 8 22 22 C 1.53005 * 109.47020 * 89.99952 * 21 11 9 23 23 N 1.46895 * 109.46896 * 180.02562 * 22 21 11 24 24 C 1.47019 * 111.00024 * 293.63366 * 23 22 21 25 25 C 1.53095 * 109.25713 * 177.61035 * 24 23 22 26 26 O 1.43018 * 109.26136 * 56.84838 * 25 24 23 27 27 C 1.43013 * 113.73475 * 301.32888 * 26 25 24 28 28 C 1.47017 * 110.99972 * 170.00172 * 23 22 21 29 29 C 1.38585 * 120.01804 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47083 * 60.00113 * 1 2 3 31 31 H 1.08998 * 109.47811 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47282 * 300.00406 * 1 2 3 33 33 H 1.08009 * 119.95286 * 359.97438 * 4 3 2 34 34 H 1.08009 * 119.93589 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.97590 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99915 * 144.87978 * 8 7 6 37 37 H 1.09000 * 109.47116 * 209.99963 * 12 11 9 38 38 H 1.08999 * 109.46322 * 329.99995 * 12 11 9 39 39 H 0.96994 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47372 * 209.99897 * 21 11 9 41 41 H 1.08999 * 109.46938 * 330.00324 * 21 11 9 42 42 H 1.09003 * 109.46711 * 300.00151 * 22 21 11 43 43 H 1.08993 * 109.46930 * 59.99928 * 22 21 11 44 44 H 1.09004 * 109.50503 * 297.54548 * 24 23 22 45 45 H 1.08998 * 109.50427 * 57.67593 * 24 23 22 46 46 H 1.09003 * 109.50891 * 296.91088 * 25 24 23 47 47 H 1.09004 * 109.53954 * 176.80475 * 25 24 23 48 48 H 1.08994 * 109.50694 * 298.72737 * 27 26 25 49 49 H 1.09007 * 109.53694 * 178.62471 * 27 26 25 50 50 H 1.09000 * 109.50417 * 302.32283 * 28 23 22 51 51 H 1.08994 * 109.50695 * 62.41245 * 28 23 22 52 52 H 1.07998 * 120.06780 * 359.74268 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9164 3.6070 0.0000 6 6 3.2959 3.6838 0.0000 7 6 4.0569 2.5221 -0.0005 8 7 5.4541 2.5998 -0.0010 9 6 6.0737 3.5906 -0.6725 10 8 5.4190 4.4640 -1.2080 11 7 7.4190 3.6132 -0.7504 12 6 8.2079 2.5604 -0.1056 13 6 8.4223 1.4277 -1.0761 14 1 8.0124 1.4862 -2.0736 15 6 9.1419 0.3165 -0.6906 16 7 9.6416 0.2455 0.5240 17 14 9.4084 -1.0873 -1.8937 18 1 10.1355 -0.5852 -3.0871 19 1 10.2079 -2.1544 -1.2401 20 1 8.0939 -1.6382 -2.3105 21 6 8.0925 4.6904 -1.4799 22 6 8.3839 5.8491 -0.5240 23 7 9.0587 6.9295 -1.2556 24 6 10.3947 6.5089 -1.7023 25 6 11.0367 7.6405 -2.5093 26 8 11.0815 8.8245 -1.7084 27 6 9.7973 9.2628 -1.2567 28 6 9.1427 8.1477 -0.4369 29 6 3.4298 1.2838 0.0005 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2118 2.3183 0.0005 34 1 1.3261 4.5116 0.0000 35 1 3.7827 4.6479 -0.0008 36 1 5.9767 1.9406 0.4820 37 1 9.1729 2.9650 0.1996 38 1 7.6746 2.1921 0.7708 39 1 10.1481 -0.5360 0.7950 40 1 9.0288 4.3179 -1.8953 41 1 7.4497 5.0391 -2.2881 42 1 7.4475 6.2216 -0.1087 43 1 9.0266 5.5004 0.2842 44 1 11.0145 6.2837 -0.8344 45 1 10.3064 5.6206 -2.3277 46 1 10.4456 7.8293 -3.4054 47 1 12.0494 7.3556 -2.7947 48 1 9.1702 9.4989 -2.1163 49 1 9.9130 10.1511 -0.6356 50 1 8.1406 8.4556 -0.1386 51 1 9.7419 7.9485 0.4515 52 1 4.0194 0.3789 0.0052 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072285558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:12 Heat of formation + Delta-G solvation = -63.975988 kcal Electronic energy + Delta-G solvation = -33138.489356 eV Core-core repulsion = 28718.186177 eV Total energy + Delta-G solvation = -4420.303179 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.39342 -39.65328 -39.31882 -37.35795 -36.11899 -34.87297 -34.05309 -32.68424 -31.24825 -30.56180 -29.92379 -28.61155 -27.33607 -27.23398 -25.78807 -24.03723 -23.17199 -22.61145 -22.47444 -21.30706 -20.32397 -19.34559 -18.14340 -17.41592 -16.69250 -16.55622 -16.16488 -16.05219 -15.89026 -15.70530 -15.57148 -15.14808 -15.04383 -14.86753 -14.70115 -14.54089 -14.15966 -13.73827 -13.45883 -13.36843 -13.23244 -12.72088 -12.65192 -12.38549 -12.30638 -12.20903 -12.01968 -11.76098 -11.50861 -11.47712 -11.39026 -11.12321 -11.02035 -10.86687 -10.78633 -10.69990 -10.41944 -10.20831 -9.93971 -9.81827 -9.69983 -9.37860 -8.65698 -8.36448 -8.21920 -7.94034 -7.56402 -6.27336 -4.36011 1.53500 1.71723 3.02226 3.20647 3.25774 3.29236 3.45548 3.64852 3.77705 3.93777 4.16107 4.26370 4.61891 4.85011 4.90903 4.99213 5.01898 5.05920 5.08372 5.11551 5.13473 5.16850 5.24825 5.38425 5.41761 5.51830 5.54775 5.60006 5.62270 5.65838 5.74819 5.75287 5.81705 5.93539 5.94515 6.02898 6.19128 6.40476 6.46632 6.54523 6.56686 6.68749 6.79325 6.96087 6.98004 7.03917 7.09371 7.22299 7.32492 7.55596 7.67741 7.67960 7.93256 8.45521 8.74620 9.15266 9.33970 10.78810 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.007392 B = 0.002942 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.943643 B = 9513.986742 C =12824.032742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.141 3.859 4 C -0.236 4.236 5 C -0.067 4.067 6 C -0.159 4.159 7 C 0.221 3.779 8 N -0.681 5.681 9 C 0.710 3.290 10 O -0.598 6.598 11 N -0.608 5.608 12 C 0.240 3.760 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.144 3.856 22 C 0.043 3.957 23 N -0.532 5.532 24 C 0.012 3.988 25 C 0.065 3.935 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.019 3.981 29 C -0.185 4.185 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.419 0.581 37 H 0.039 0.961 38 H 0.030 0.970 39 H 0.267 0.733 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.059 0.941 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.041 0.959 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 9.080 0.236 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.096 3.904 4 C -0.255 4.255 5 C -0.086 4.086 6 C -0.179 4.179 7 C 0.123 3.877 8 N -0.329 5.329 9 C 0.412 3.588 10 O -0.478 6.478 11 N -0.342 5.342 12 C 0.120 3.880 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.137 4.137 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.019 3.981 22 C -0.086 4.086 23 N -0.258 5.258 24 C -0.116 4.116 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.110 4.110 29 C -0.206 4.206 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.258 0.742 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.111 0.889 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.059 0.941 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.846 9.589 -0.403 13.052 hybrid contribution 0.527 -1.625 0.379 1.750 sum -8.319 7.964 -0.025 11.516 Atomic orbital electron populations 1.22994 0.78799 1.03517 1.01205 1.86058 1.21011 1.27166 1.88967 1.18574 0.91516 0.83951 0.96397 1.21069 0.99494 0.92397 1.12582 1.20753 0.94119 0.96684 0.97026 1.21278 0.93260 0.98806 1.04606 1.17231 0.82480 0.92659 0.95287 1.42861 1.04265 1.32013 1.53751 1.15761 0.82503 0.81497 0.79001 1.90827 1.64734 1.39560 1.52705 1.47355 1.03509 1.27495 1.55815 1.19362 0.91301 0.84663 0.92684 1.21466 1.34989 1.01923 0.99681 0.91951 1.24945 0.94976 0.98372 0.95362 1.69907 1.35188 1.30071 1.17677 0.86546 0.78518 0.81387 0.81026 1.20079 1.21121 1.19982 1.21064 0.97797 0.85421 0.93776 1.22543 0.98591 0.91606 0.95825 1.62139 1.18564 1.04732 1.40381 1.22886 0.89513 0.99158 1.00080 1.22683 1.01227 0.84179 0.93153 1.87957 1.28937 1.43748 1.70150 1.22642 0.84632 0.95904 0.98015 1.22759 1.01454 0.91500 0.95272 1.20087 0.91803 0.97521 1.11215 0.92805 0.88577 0.92823 0.86002 0.85923 0.83999 0.74159 0.94338 0.95247 0.92340 0.90363 0.89917 0.90521 0.94439 0.93752 0.88852 0.92240 0.88508 0.92279 0.88725 0.89698 0.94072 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.43 10.49 -19.42 -0.20 -4.64 16 3 C 0.14 2.14 6.68 -39.24 -0.26 1.88 16 4 C -0.24 -3.15 9.04 -39.40 -0.36 -3.50 16 5 C -0.07 -0.94 10.03 -39.63 -0.40 -1.33 16 6 C -0.16 -2.67 8.69 -39.37 -0.34 -3.02 16 7 C 0.22 3.96 6.30 -83.71 -0.53 3.43 16 8 N -0.68 -13.07 5.21 -14.24 -0.07 -13.15 16 9 C 0.71 14.70 8.12 -86.92 -0.71 13.99 16 10 O -0.60 -13.13 13.35 5.29 0.07 -13.06 16 11 N -0.61 -12.30 2.46 -180.80 -0.44 -12.75 16 12 C 0.24 5.40 4.97 -5.19 -0.03 5.37 16 13 C -0.54 -13.56 9.39 -34.44 -0.32 -13.88 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.71 5.46 -17.81 -0.10 1.62 16 16 N -0.89 -23.65 13.29 55.43 0.74 -22.92 16 17 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.14 2.58 5.34 -4.04 -0.02 2.56 16 22 C 0.04 0.68 5.28 -3.82 -0.02 0.66 16 23 N -0.53 -7.41 4.73 -234.31 -1.11 -8.52 16 24 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 25 C 0.06 0.74 7.01 37.21 0.26 1.00 16 26 O -0.39 -4.95 10.83 -35.23 -0.38 -5.33 16 27 C 0.07 0.70 7.01 37.21 0.26 0.96 16 28 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 29 C -0.18 -3.11 9.90 -39.24 -0.39 -3.50 16 30 H 0.05 0.44 7.66 -51.92 -0.40 0.04 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.12 1.27 6.29 -52.48 -0.33 0.94 16 34 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.14 2.56 6.22 -52.49 -0.33 2.23 16 36 H 0.42 8.04 6.52 -40.82 -0.27 7.77 16 37 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 38 H 0.03 0.68 6.30 -51.93 -0.33 0.35 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.08 1.39 6.45 -51.93 -0.33 1.06 16 41 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 42 H 0.08 1.26 8.04 -51.93 -0.42 0.85 16 43 H 0.04 0.62 8.12 -51.93 -0.42 0.19 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 51 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 417.77 15.07 6.30 6.30 Total: -1.00 -29.53 417.77 -10.25 -39.78 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.12 Total: 11.24 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -2.00 Total: 7.83 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.89 Total: -57.33 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.51 Total: -23.03 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -29.53 -10.25 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.195 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds