Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35899 * 117.00133 * 2 1 4 4 C 1.38805 * 120.02342 * 0.02562 * 3 2 1 5 5 C 1.38164 * 120.08559 * 180.02562 * 4 3 2 6 6 C 1.38167 * 120.12548 * 359.94667 * 5 4 3 7 7 C 1.38877 * 120.04129 * 0.05190 * 6 5 4 8 8 N 1.39938 * 120.04348 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00037 * 324.87840 * 8 7 6 10 10 O 1.21585 * 119.99985 * 4.58611 * 9 8 7 11 11 N 1.34773 * 119.99822 * 184.58748 * 9 8 7 12 12 C 1.46505 * 120.00401 * 0.02562 * 11 9 8 13 13 C 1.50695 * 109.47073 * 89.99958 * 12 11 9 14 14 H 1.08002 * 120.00246 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99866 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99756 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00084 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47180 * 59.99376 * 17 15 13 19 19 H 1.48497 * 109.47262 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47130 * 299.99313 * 17 15 13 21 21 C 1.46504 * 119.99952 * 180.02562 * 11 9 8 22 22 C 1.53005 * 109.47020 * 89.99952 * 21 11 9 23 23 N 1.46895 * 109.46896 * 180.02562 * 22 21 11 24 24 C 1.47019 * 111.00024 * 293.63366 * 23 22 21 25 25 C 1.53095 * 109.25713 * 177.61035 * 24 23 22 26 26 O 1.43018 * 109.26136 * 56.84838 * 25 24 23 27 27 C 1.43013 * 113.73475 * 301.32888 * 26 25 24 28 28 C 1.47017 * 110.99972 * 170.00172 * 23 22 21 29 29 C 1.38585 * 120.01804 * 179.97438 * 3 2 1 30 30 H 1.09008 * 109.47083 * 60.00113 * 1 2 3 31 31 H 1.08998 * 109.47811 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47282 * 300.00406 * 1 2 3 33 33 H 1.08009 * 119.95286 * 359.97438 * 4 3 2 34 34 H 1.08009 * 119.93589 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.97590 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99915 * 144.87978 * 8 7 6 37 37 H 1.09000 * 109.47116 * 209.99963 * 12 11 9 38 38 H 1.08999 * 109.46322 * 329.99995 * 12 11 9 39 39 H 0.96994 * 119.99524 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.47372 * 209.99897 * 21 11 9 41 41 H 1.08999 * 109.46938 * 330.00324 * 21 11 9 42 42 H 1.09003 * 109.46711 * 300.00151 * 22 21 11 43 43 H 1.08993 * 109.46930 * 59.99928 * 22 21 11 44 44 H 1.09004 * 109.50503 * 297.54548 * 24 23 22 45 45 H 1.08998 * 109.50427 * 57.67593 * 24 23 22 46 46 H 1.09003 * 109.50891 * 296.91088 * 25 24 23 47 47 H 1.09004 * 109.53954 * 176.80475 * 25 24 23 48 48 H 1.08994 * 109.50694 * 298.72737 * 27 26 25 49 49 H 1.09007 * 109.53694 * 178.62471 * 27 26 25 50 50 H 1.09000 * 109.50417 * 302.32283 * 28 23 22 51 51 H 1.08994 * 109.50695 * 62.41245 * 28 23 22 52 52 H 1.07998 * 120.06780 * 359.74268 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9164 3.6070 0.0000 6 6 3.2959 3.6838 0.0000 7 6 4.0569 2.5221 -0.0005 8 7 5.4541 2.5998 -0.0010 9 6 6.0737 3.5906 -0.6725 10 8 5.4190 4.4640 -1.2080 11 7 7.4190 3.6132 -0.7504 12 6 8.2079 2.5604 -0.1056 13 6 8.4223 1.4277 -1.0761 14 1 8.0124 1.4862 -2.0736 15 6 9.1419 0.3165 -0.6906 16 7 9.6416 0.2455 0.5240 17 14 9.4084 -1.0873 -1.8937 18 1 10.1355 -0.5852 -3.0871 19 1 10.2079 -2.1544 -1.2401 20 1 8.0939 -1.6382 -2.3105 21 6 8.0925 4.6904 -1.4799 22 6 8.3839 5.8491 -0.5240 23 7 9.0587 6.9295 -1.2556 24 6 10.3947 6.5089 -1.7023 25 6 11.0367 7.6405 -2.5093 26 8 11.0815 8.8245 -1.7084 27 6 9.7973 9.2628 -1.2567 28 6 9.1427 8.1477 -0.4369 29 6 3.4298 1.2838 0.0005 30 1 -0.3634 0.5139 -0.8901 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.2118 2.3183 0.0005 34 1 1.3261 4.5116 0.0000 35 1 3.7827 4.6479 -0.0008 36 1 5.9767 1.9406 0.4820 37 1 9.1729 2.9650 0.1996 38 1 7.6746 2.1921 0.7708 39 1 10.1481 -0.5360 0.7950 40 1 9.0288 4.3179 -1.8953 41 1 7.4497 5.0391 -2.2881 42 1 7.4475 6.2216 -0.1087 43 1 9.0266 5.5004 0.2842 44 1 11.0145 6.2837 -0.8344 45 1 10.3064 5.6206 -2.3277 46 1 10.4456 7.8293 -3.4054 47 1 12.0494 7.3556 -2.7947 48 1 9.1702 9.4989 -2.1163 49 1 9.9130 10.1511 -0.6356 50 1 8.1406 8.4556 -0.1386 51 1 9.7419 7.9485 0.4515 52 1 4.0194 0.3789 0.0052 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072285558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -82.599767 kcal Electronic energy + Delta-G solvation = -33139.296944 eV Core-core repulsion = 28718.186177 eV Total energy + Delta-G solvation = -4421.110767 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.81859 -40.80032 -40.43791 -38.58737 -37.36494 -36.44231 -35.43091 -34.58546 -32.21561 -31.75164 -31.21196 -29.96202 -29.01019 -28.07714 -27.04781 -25.06694 -24.99477 -23.89670 -23.67936 -22.54685 -21.36635 -20.82363 -19.46044 -18.99016 -18.49609 -17.80197 -17.30644 -17.11303 -17.05471 -16.90630 -16.61375 -16.49522 -16.27415 -16.09783 -16.03585 -15.96034 -15.39459 -15.11836 -14.65795 -14.57774 -14.44496 -14.35282 -14.14171 -13.75919 -13.49329 -13.40808 -13.15804 -13.09254 -12.92659 -12.86469 -12.64205 -12.50786 -12.32094 -12.20890 -12.11420 -11.88748 -11.85396 -11.76319 -11.45476 -11.25405 -10.95882 -10.71146 -10.63385 -9.69844 -9.47489 -9.36130 -8.91404 -8.24850 -6.40102 0.30960 0.50399 1.40044 1.41567 1.48330 1.61982 2.10448 2.34315 2.42964 2.71380 2.86990 2.94725 3.05446 3.11288 3.82033 3.89331 3.91483 3.99308 4.08277 4.14815 4.19694 4.27950 4.30955 4.38579 4.39051 4.45330 4.45835 4.48908 4.57445 4.59043 4.70757 4.71815 4.75468 4.77187 4.81550 4.81856 4.90388 4.96717 5.01127 5.09569 5.30118 5.32728 5.37733 5.56030 5.57881 5.71686 5.83195 5.91784 5.97215 5.98770 6.09067 6.16946 6.48802 6.62523 6.91748 7.32026 7.54193 8.79688 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.007392 B = 0.002942 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3786.943643 B = 9513.986742 C =12824.032742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.140 3.860 4 C -0.222 4.222 5 C -0.058 4.058 6 C -0.175 4.175 7 C 0.194 3.806 8 N -0.681 5.681 9 C 0.707 3.293 10 O -0.613 6.613 11 N -0.610 5.610 12 C 0.257 3.743 13 C -0.548 4.548 14 H 0.050 0.950 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.276 1.276 21 C 0.147 3.853 22 C 0.060 3.940 23 N -0.537 5.537 24 C 0.011 3.989 25 C 0.068 3.932 26 O -0.403 6.403 27 C 0.066 3.934 28 C 0.017 3.983 29 C -0.203 4.203 30 H 0.066 0.934 31 H 0.117 0.883 32 H 0.070 0.930 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.415 0.585 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.269 0.731 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.027 0.973 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.065 0.935 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.119 0.881 50 H 0.094 0.906 51 H 0.036 0.964 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 9.520 -0.302 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.094 3.906 4 C -0.241 4.241 5 C -0.077 4.077 6 C -0.196 4.196 7 C 0.098 3.902 8 N -0.329 5.329 9 C 0.409 3.591 10 O -0.494 6.494 11 N -0.344 5.344 12 C 0.136 3.864 13 C -0.587 4.587 14 H 0.068 0.932 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.201 1.201 21 C 0.024 3.976 22 C -0.069 4.069 23 N -0.263 5.263 24 C -0.117 4.117 25 C -0.009 4.009 26 O -0.322 6.322 27 C -0.010 4.010 28 C -0.111 4.111 29 C -0.225 4.225 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.143 0.857 36 H 0.254 0.746 37 H 0.044 0.956 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.133 0.867 48 H 0.082 0.918 49 H 0.137 0.863 50 H 0.112 0.888 51 H 0.054 0.946 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.696 10.037 -0.944 14.698 hybrid contribution 0.936 -1.786 0.560 2.092 sum -9.760 8.251 -0.384 12.786 Atomic orbital electron populations 1.23382 0.76076 1.05581 1.02594 1.86045 1.23827 1.26631 1.88636 1.18681 0.91031 0.85254 0.95593 1.21453 1.01284 0.91170 1.10183 1.21116 0.92972 0.98457 0.95117 1.21262 0.94707 0.97581 1.06077 1.17455 0.81765 0.93667 0.97288 1.42825 1.05141 1.31399 1.53497 1.15869 0.82448 0.81726 0.79078 1.90800 1.64915 1.40200 1.53511 1.47333 1.03474 1.27636 1.55931 1.19007 0.90737 0.84544 0.92139 1.21595 1.34798 1.02839 0.99429 0.93197 1.25573 0.94770 1.00310 0.96673 1.69986 1.35783 1.30739 1.18911 0.85678 0.78239 0.78935 0.79274 1.19682 1.20529 1.20120 1.21092 0.97172 0.85518 0.93859 1.22250 0.98251 0.91461 0.94953 1.62155 1.19053 1.04667 1.40407 1.22926 0.88963 0.99962 0.99862 1.22743 1.02214 0.83199 0.92736 1.87942 1.29993 1.43940 1.70341 1.22783 0.83925 0.95974 0.98363 1.22865 1.02151 0.90981 0.95127 1.20105 0.93093 0.96724 1.12539 0.91494 0.86454 0.91164 0.82175 0.82569 0.85670 0.74634 0.95633 0.95856 0.92201 0.90497 0.90782 0.91280 0.95440 0.94784 0.89274 0.91642 0.86720 0.91760 0.86264 0.88804 0.94612 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.80 10.49 -92.42 -0.97 -9.77 16 3 C 0.14 4.07 6.68 22.49 0.15 4.22 16 4 C -0.22 -5.26 9.04 22.39 0.20 -5.06 16 5 C -0.06 -1.50 10.03 22.24 0.22 -1.28 16 6 C -0.18 -5.93 8.69 22.41 0.19 -5.73 16 7 C 0.19 7.18 6.30 38.14 0.24 7.42 16 8 N -0.68 -27.48 5.21 -317.23 -1.65 -29.13 16 9 C 0.71 30.49 8.12 179.06 1.45 31.94 16 10 O -0.61 -27.78 13.35 -3.98 -0.05 -27.83 16 11 N -0.61 -25.77 2.46 -844.19 -2.07 -27.84 16 12 C 0.26 12.02 4.97 85.63 0.43 12.45 16 13 C -0.55 -28.13 9.39 25.60 0.24 -27.89 16 14 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 15 C 0.03 1.44 5.46 84.65 0.46 1.90 16 16 N -0.92 -49.31 13.29 21.45 0.28 -49.02 16 17 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 C 0.15 5.48 5.34 86.38 0.46 5.94 16 22 C 0.06 1.96 5.28 86.31 0.46 2.41 16 23 N -0.54 -15.01 4.73 -895.22 -4.23 -19.24 16 24 C 0.01 0.29 5.44 86.31 0.47 0.76 16 25 C 0.07 1.48 7.01 72.01 0.50 1.99 16 26 O -0.40 -9.67 10.83 -148.98 -1.61 -11.29 16 27 C 0.07 1.32 7.01 72.01 0.50 1.83 16 28 C 0.02 0.39 5.64 86.31 0.49 0.88 16 29 C -0.20 -6.99 9.90 22.49 0.22 -6.77 16 30 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 33 H 0.16 2.55 6.29 -2.91 -0.02 2.53 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.13 4.63 6.22 -2.91 -0.02 4.61 16 36 H 0.41 16.94 6.52 -92.71 -0.60 16.33 16 37 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 38 H 0.02 1.13 6.30 -2.39 -0.02 1.12 16 39 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.08 2.85 6.45 -2.39 -0.02 2.83 16 41 H 0.07 2.88 7.42 -2.39 -0.02 2.87 16 42 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 43 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 44 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.09 2.37 6.38 -2.39 -0.02 2.36 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 48 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 50 H 0.09 2.01 8.09 -2.39 -0.02 1.99 16 51 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -64.36 417.77 -0.15 -64.50 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: 0.33 Total: 39.48 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 7.81 Total: 26.40 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -7.67 Total: -125.24 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.64 Total: -48.89 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -64.36 -0.15 -64.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.097 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds