Wall clock time and date at job start Tue Mar 31 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00414 * 2 1 4 4 C 1.38682 * 120.00107 * 179.97438 * 2 1 3 5 5 C 1.40257 * 119.23007 * 5.22853 * 4 2 1 6 6 C 1.36212 * 119.88029 * 180.25586 * 5 4 2 7 7 C 1.50703 * 120.85439 * 179.77338 * 6 5 4 8 8 N 1.46505 * 109.47064 * 259.72263 * 7 6 5 9 9 S 1.65596 * 119.99941 * 164.99860 * 8 7 6 10 10 O 1.42097 * 104.27711 * 181.07266 * 9 8 7 11 11 O 1.42100 * 104.27686 * 308.93150 * 9 8 7 12 12 C 1.81406 * 104.44797 * 65.00238 * 9 8 7 13 13 C 1.52999 * 109.47078 * 180.02562 * 12 9 8 14 14 C 1.50700 * 109.47373 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99502 * 359.97438 * 14 13 12 16 16 C 1.37865 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00213 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46910 * 60.00253 * 18 16 14 20 20 H 1.48502 * 109.47008 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46976 * 300.00219 * 18 16 14 22 22 C 1.41010 * 118.28947 * 359.50349 * 6 5 4 23 23 C 1.40343 * 121.25947 * 180.29370 * 22 6 5 24 24 C 1.36201 * 119.64161 * 180.02562 * 23 22 6 25 25 C 1.39285 * 120.85005 * 359.96001 * 24 23 22 26 26 C 1.36134 * 121.03172 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.75875 * 0.02562 * 26 25 24 28 28 N 1.31707 * 119.23343 * 185.00034 * 4 2 1 29 29 H 1.09003 * 109.46998 * 270.00292 * 1 2 3 30 30 H 1.08991 * 109.47350 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47140 * 150.00537 * 1 2 3 32 32 H 1.09004 * 109.47163 * 270.00562 * 3 2 1 33 33 H 1.09002 * 109.47085 * 29.99660 * 3 2 1 34 34 H 1.08993 * 109.47628 * 150.00092 * 3 2 1 35 35 H 1.08008 * 120.05841 * 0.03551 * 5 4 2 36 36 H 1.09002 * 109.47152 * 139.72346 * 7 6 5 37 37 H 1.09001 * 109.46980 * 19.72447 * 7 6 5 38 38 H 0.96997 * 119.99914 * 345.00740 * 8 7 6 39 39 H 1.09004 * 109.47006 * 299.99506 * 12 9 8 40 40 H 1.08991 * 109.46984 * 59.99873 * 12 9 8 41 41 H 1.09004 * 109.46523 * 299.99464 * 13 12 9 42 42 H 1.08996 * 109.47442 * 59.99434 * 13 12 9 43 43 H 0.97001 * 120.00561 * 179.97438 * 17 16 14 44 44 H 1.08006 * 120.17612 * 359.95643 * 23 22 6 45 45 H 1.08000 * 119.57678 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.48753 * 180.02562 * 25 24 23 47 47 H 1.07992 * 120.12198 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1584 -1.2010 0.0005 5 6 1.4453 -2.4037 -0.1105 6 6 2.1126 -3.5911 -0.1061 7 6 1.3680 -4.8965 -0.2190 8 7 1.2323 -5.4978 1.1101 9 16 0.1536 -6.7301 1.3551 10 8 0.2776 -7.0347 2.7375 11 8 -1.0675 -6.2385 0.8198 12 6 0.7884 -8.0952 0.3430 13 6 -0.1339 -9.3076 0.4858 14 6 0.3937 -10.4419 -0.3545 15 1 1.2965 -10.3110 -0.9328 16 6 -0.2758 -11.6467 -0.3849 17 7 -1.3747 -11.8063 0.3197 18 14 0.3779 -13.0525 -1.4270 19 1 1.7443 -13.4130 -0.9709 20 1 -0.5173 -14.2293 -1.2884 21 1 0.4259 -12.6327 -2.8506 22 6 3.5184 -3.5673 0.0010 23 6 4.2686 -4.7534 0.0055 24 6 5.6252 -4.6920 0.1110 25 6 6.2788 -3.4664 0.2138 26 6 5.5819 -2.2970 0.2122 27 6 4.1807 -2.3202 0.1061 28 7 3.4716 -1.1855 0.1007 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3792 1.5833 -1.0277 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.3687 -2.3883 -0.1957 36 1 1.9200 -5.5745 -0.8699 37 1 0.3785 -4.7152 -0.6386 38 1 1.7742 -5.1740 1.8465 39 1 0.8235 -7.7870 -0.7019 40 1 1.7913 -8.3598 0.6778 41 1 -0.1694 -9.6160 1.5307 42 1 -1.1367 -9.0427 0.1508 43 1 -1.8460 -12.6539 0.2980 44 1 3.7728 -5.7097 -0.0732 45 1 6.2014 -5.6054 0.1148 46 1 7.3555 -3.4434 0.2960 47 1 6.1037 -1.3550 0.2923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072304095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:48 Heat of formation + Delta-G solvation = -9.352593 kcal Electronic energy + Delta-G solvation = -29890.095161 eV Core-core repulsion = 25779.080406 eV Total energy + Delta-G solvation = -4111.014754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16490 -38.31983 -36.79347 -36.41652 -35.50790 -35.36647 -33.92251 -32.81241 -31.19437 -30.56054 -30.07844 -28.56469 -26.42789 -25.63488 -25.49175 -23.57242 -22.30045 -21.71652 -20.89634 -19.03265 -18.26739 -17.77454 -17.54136 -17.25229 -16.47830 -16.12065 -15.65479 -15.47206 -15.43770 -14.96746 -14.76766 -14.57646 -14.56099 -14.13898 -14.02451 -13.93692 -13.45314 -13.20925 -12.93190 -12.86199 -12.52117 -12.47620 -12.31084 -12.01171 -11.79880 -11.77993 -11.64929 -11.59282 -11.56867 -11.51110 -11.08742 -10.99753 -10.54989 -10.45904 -10.40610 -9.85578 -9.73827 -9.62604 -9.51988 -9.08815 -8.55800 -8.52053 -7.69732 -6.14307 -4.20180 0.23757 0.74565 0.80918 1.83469 2.58111 2.81801 3.14076 3.25893 3.30998 3.32532 4.01474 4.04353 4.20869 4.27642 4.35962 4.48113 4.59237 4.68188 4.74868 4.87105 4.89667 4.93091 5.00334 5.05500 5.13242 5.20878 5.21431 5.28077 5.31522 5.37496 5.49982 5.53906 5.56738 5.62452 5.72364 5.82907 5.89743 5.91217 6.20040 6.28404 6.37823 6.44287 6.52472 6.73411 6.97373 7.04267 7.27127 7.33222 7.78184 7.93110 8.14861 8.82957 9.44755 10.96646 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.002439 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.816523 B =11479.539818 C =12876.140179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.613 5.613 3 C 0.099 3.901 4 C 0.426 3.574 5 C -0.200 4.200 6 C 0.003 3.997 7 C 0.153 3.847 8 N -1.123 6.123 9 S 2.592 3.408 10 O -0.964 6.964 11 O -0.965 6.965 12 C -0.589 4.589 13 C 0.028 3.972 14 C -0.521 4.521 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.138 4.138 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.086 4.086 26 C -0.117 4.117 27 C 0.182 3.818 28 N -0.548 5.548 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.415 0.585 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 24.456 -2.171 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.328 5.328 3 C -0.044 4.044 4 C 0.179 3.821 5 C -0.224 4.224 6 C -0.006 4.006 7 C 0.027 3.973 8 N -0.880 5.880 9 S 2.689 3.311 10 O -0.954 6.954 11 O -0.955 6.955 12 C -0.723 4.723 13 C -0.011 4.011 14 C -0.560 4.560 15 H 0.079 0.921 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.142 4.142 23 C -0.095 4.095 24 C -0.160 4.160 25 C -0.106 4.106 26 C -0.137 4.137 27 C 0.060 3.940 28 N -0.269 5.269 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.248 0.752 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.163 25.267 -1.640 27.284 hybrid contribution 0.581 -1.556 -0.742 1.819 sum 10.744 23.711 -2.382 26.141 Atomic orbital electron populations 1.21806 0.78177 1.03379 1.01994 1.46205 1.05305 1.03158 1.78091 1.21572 0.97756 0.83755 1.01316 1.18386 0.88463 0.85697 0.89586 1.21339 1.01580 0.91239 1.08244 1.19867 0.92390 0.94722 0.93592 1.20204 1.00917 0.91182 0.85008 1.55878 1.61647 1.53825 1.16687 1.05639 0.74282 0.75453 0.75688 1.93564 1.86214 1.84499 1.31113 1.93538 1.42426 1.78365 1.81185 1.30454 1.12212 1.15970 1.13651 1.18961 0.93380 0.89496 0.99237 1.20952 1.10591 0.96403 1.28102 0.92068 1.25063 0.94887 0.98826 0.95687 1.69940 1.16946 1.25662 1.40278 0.86530 0.78825 0.81290 0.80624 1.20068 1.21084 1.20075 1.18544 0.93084 0.94803 1.07800 1.21065 0.94197 0.97205 0.96988 1.20846 0.94640 0.98055 1.02461 1.20882 1.00105 0.92155 0.97442 1.20627 0.91302 0.98873 1.02851 1.18444 0.93657 0.86810 0.95096 1.67501 1.05464 1.29697 1.24214 0.92591 0.90795 0.90659 0.93390 0.91854 0.90103 0.84050 0.89938 0.88640 0.75182 0.86214 0.85941 0.94819 0.94794 0.92448 0.85021 0.85651 0.85662 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.27 59.85 0.61 1.17 16 2 N -0.61 -5.49 3.38 -189.60 -0.64 -6.13 16 3 C 0.10 0.72 10.49 59.84 0.63 1.35 16 4 C 0.43 4.84 7.37 -155.49 -1.15 3.69 16 5 C -0.20 -2.16 8.83 -39.55 -0.35 -2.51 16 6 C 0.00 0.04 5.31 -104.30 -0.55 -0.52 16 7 C 0.15 1.66 5.58 -5.19 -0.03 1.63 16 8 N -1.12 -13.99 5.88 -11.65 -0.07 -14.06 16 9 S 2.59 44.02 5.46 -107.50 -0.59 43.44 16 10 O -0.96 -19.51 18.08 -57.54 -1.04 -20.55 16 11 O -0.97 -18.98 17.50 -57.54 -1.01 -19.98 16 12 C -0.59 -10.60 6.01 37.16 0.22 -10.38 16 13 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 14 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 16 15 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 18 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C -0.14 -1.61 5.74 -106.77 -0.61 -2.22 16 23 C -0.08 -0.79 9.32 -39.52 -0.37 -1.16 16 24 C -0.14 -1.32 9.96 -39.93 -0.40 -1.71 16 25 C -0.09 -0.76 9.94 -39.95 -0.40 -1.16 16 26 C -0.12 -1.20 9.98 -39.47 -0.39 -1.60 16 27 C 0.18 2.22 6.60 -84.86 -0.56 1.66 16 28 N -0.55 -6.82 9.00 -10.21 -0.09 -6.91 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.07 0.45 5.91 -51.93 -0.31 0.14 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.08 0.69 7.27 -51.93 -0.38 0.31 16 35 H 0.14 1.28 5.94 -52.48 -0.31 0.97 16 36 H 0.08 0.75 7.07 -51.93 -0.37 0.38 16 37 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 38 H 0.41 4.74 8.61 -34.47 -0.30 4.44 16 39 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 40 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.13 1.22 6.67 -52.48 -0.35 0.87 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 47 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -36.45 402.64 -12.13 -48.58 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -6.59 Total: 3.13 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -3.89 Total: -24.06 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.07 Total: -52.52 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.05 Total: -40.53 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 44.02 SS G_CDS: -0.59 Total: 43.44 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.45 -12.13 -48.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072304095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.231 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds