Wall clock time and date at job start Tue Mar 31 2020 05:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00414 * 2 1 4 4 C 1.38682 * 120.00107 * 179.97438 * 2 1 3 5 5 C 1.40257 * 119.23007 * 5.22853 * 4 2 1 6 6 C 1.36212 * 119.88029 * 180.25586 * 5 4 2 7 7 C 1.50703 * 120.85439 * 179.77338 * 6 5 4 8 8 N 1.46505 * 109.47064 * 259.72263 * 7 6 5 9 9 S 1.65596 * 119.99941 * 164.99860 * 8 7 6 10 10 O 1.42097 * 104.27711 * 181.07266 * 9 8 7 11 11 O 1.42100 * 104.27686 * 308.93150 * 9 8 7 12 12 C 1.81406 * 104.44797 * 65.00238 * 9 8 7 13 13 C 1.52999 * 109.47078 * 180.02562 * 12 9 8 14 14 C 1.50700 * 109.47373 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99502 * 359.97438 * 14 13 12 16 16 C 1.37865 * 120.00347 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00213 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46910 * 60.00253 * 18 16 14 20 20 H 1.48502 * 109.47008 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46976 * 300.00219 * 18 16 14 22 22 C 1.41010 * 118.28947 * 359.50349 * 6 5 4 23 23 C 1.40343 * 121.25947 * 180.29370 * 22 6 5 24 24 C 1.36201 * 119.64161 * 180.02562 * 23 22 6 25 25 C 1.39285 * 120.85005 * 359.96001 * 24 23 22 26 26 C 1.36134 * 121.03172 * 0.02562 * 25 24 23 27 27 C 1.40540 * 119.75875 * 0.02562 * 26 25 24 28 28 N 1.31707 * 119.23343 * 185.00034 * 4 2 1 29 29 H 1.09003 * 109.46998 * 270.00292 * 1 2 3 30 30 H 1.08991 * 109.47350 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47140 * 150.00537 * 1 2 3 32 32 H 1.09004 * 109.47163 * 270.00562 * 3 2 1 33 33 H 1.09002 * 109.47085 * 29.99660 * 3 2 1 34 34 H 1.08993 * 109.47628 * 150.00092 * 3 2 1 35 35 H 1.08008 * 120.05841 * 0.03551 * 5 4 2 36 36 H 1.09002 * 109.47152 * 139.72346 * 7 6 5 37 37 H 1.09001 * 109.46980 * 19.72447 * 7 6 5 38 38 H 0.96997 * 119.99914 * 345.00740 * 8 7 6 39 39 H 1.09004 * 109.47006 * 299.99506 * 12 9 8 40 40 H 1.08991 * 109.46984 * 59.99873 * 12 9 8 41 41 H 1.09004 * 109.46523 * 299.99464 * 13 12 9 42 42 H 1.08996 * 109.47442 * 59.99434 * 13 12 9 43 43 H 0.97001 * 120.00561 * 179.97438 * 17 16 14 44 44 H 1.08006 * 120.17612 * 359.95643 * 23 22 6 45 45 H 1.08000 * 119.57678 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.48753 * 180.02562 * 25 24 23 47 47 H 1.07992 * 120.12198 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1584 -1.2010 0.0005 5 6 1.4453 -2.4037 -0.1105 6 6 2.1126 -3.5911 -0.1061 7 6 1.3680 -4.8965 -0.2190 8 7 1.2323 -5.4978 1.1101 9 16 0.1536 -6.7301 1.3551 10 8 0.2776 -7.0347 2.7375 11 8 -1.0675 -6.2385 0.8198 12 6 0.7884 -8.0952 0.3430 13 6 -0.1339 -9.3076 0.4858 14 6 0.3937 -10.4419 -0.3545 15 1 1.2965 -10.3110 -0.9328 16 6 -0.2758 -11.6467 -0.3849 17 7 -1.3747 -11.8063 0.3197 18 14 0.3779 -13.0525 -1.4270 19 1 1.7443 -13.4130 -0.9709 20 1 -0.5173 -14.2293 -1.2884 21 1 0.4259 -12.6327 -2.8506 22 6 3.5184 -3.5673 0.0010 23 6 4.2686 -4.7534 0.0055 24 6 5.6252 -4.6920 0.1110 25 6 6.2788 -3.4664 0.2138 26 6 5.5819 -2.2970 0.2122 27 6 4.1807 -2.3202 0.1061 28 7 3.4716 -1.1855 0.1007 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3792 1.5833 -1.0277 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1383 0.5138 35 1 0.3687 -2.3883 -0.1957 36 1 1.9200 -5.5745 -0.8699 37 1 0.3785 -4.7152 -0.6386 38 1 1.7742 -5.1740 1.8465 39 1 0.8235 -7.7870 -0.7019 40 1 1.7913 -8.3598 0.6778 41 1 -0.1694 -9.6160 1.5307 42 1 -1.1367 -9.0427 0.1508 43 1 -1.8460 -12.6539 0.2980 44 1 3.7728 -5.7097 -0.0732 45 1 6.2014 -5.6054 0.1148 46 1 7.3555 -3.4434 0.2960 47 1 6.1037 -1.3550 0.2923 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072304095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:47 Heat of formation + Delta-G solvation = -34.104158 kcal Electronic energy + Delta-G solvation = -29891.168469 eV Core-core repulsion = 25779.080406 eV Total energy + Delta-G solvation = -4112.088063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93172 -39.01042 -38.19317 -37.40646 -36.98643 -36.12753 -35.86082 -33.72063 -33.09267 -31.28938 -30.80699 -29.16394 -27.55971 -27.24793 -26.20139 -24.32174 -23.57062 -23.00142 -21.70952 -20.34830 -19.14509 -18.96004 -18.48588 -18.35032 -17.92376 -17.26663 -16.99932 -16.51012 -16.34694 -16.19226 -15.93579 -15.67021 -15.31368 -15.09033 -14.89646 -14.74025 -14.70048 -14.42858 -14.11856 -13.73501 -13.63932 -13.41980 -13.19499 -13.15349 -13.09347 -12.91779 -12.87732 -12.82341 -12.76922 -12.72849 -12.34313 -12.22887 -12.18792 -12.14443 -11.72492 -11.38352 -11.16087 -10.61026 -10.53291 -10.41672 -10.30136 -9.31393 -8.41353 -8.23164 -6.36663 -0.76792 -0.42852 0.03561 1.02594 1.43276 1.46216 1.54167 1.87623 1.95966 2.11042 2.40312 2.81373 3.10625 3.20492 3.22608 3.34952 3.55526 3.74932 3.85390 4.01028 4.09441 4.16738 4.17246 4.29544 4.31928 4.34350 4.39357 4.49343 4.55346 4.57835 4.74714 4.77230 4.78640 4.81872 4.89924 4.95936 5.01905 5.16060 5.19142 5.31637 5.32783 5.47177 5.55150 5.64499 5.71650 5.88707 5.97943 6.06616 6.09454 6.31775 6.77351 7.15178 7.33493 8.88814 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.002439 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.816523 B =11479.539818 C =12876.140179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.615 5.615 3 C 0.098 3.902 4 C 0.410 3.590 5 C -0.206 4.206 6 C -0.001 4.001 7 C 0.146 3.854 8 N -1.105 6.105 9 S 2.621 3.379 10 O -0.999 6.999 11 O -0.993 6.993 12 C -0.586 4.586 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.263 1.263 22 C -0.152 4.152 23 C -0.088 4.088 24 C -0.143 4.143 25 C -0.080 4.080 26 C -0.132 4.132 27 C 0.158 3.842 28 N -0.567 5.567 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.155 0.845 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.423 0.577 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.005 0.995 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.634 24.869 -3.491 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C -0.044 4.044 4 C 0.163 3.837 5 C -0.230 4.230 6 C -0.010 4.010 7 C 0.021 3.979 8 N -0.865 5.865 9 S 2.718 3.282 10 O -0.989 6.989 11 O -0.983 6.983 12 C -0.719 4.719 13 C -0.020 4.020 14 C -0.575 4.575 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.795 3.205 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.187 1.187 22 C -0.156 4.156 23 C -0.107 4.107 24 C -0.162 4.162 25 C -0.100 4.100 26 C -0.152 4.152 27 C 0.036 3.964 28 N -0.289 5.289 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.173 0.827 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.258 0.742 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.023 0.977 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.171 0.829 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.975 25.700 -2.963 28.508 hybrid contribution 0.059 -1.548 -0.323 1.582 sum 12.034 24.153 -3.286 27.184 Atomic orbital electron populations 1.21989 0.76692 1.04575 1.02552 1.46493 1.06335 1.02895 1.77263 1.21633 0.97439 0.83697 1.01645 1.18687 0.88512 0.86790 0.89748 1.21544 1.02305 0.91162 1.07990 1.19866 0.92372 0.94735 0.94030 1.20460 1.01705 0.91666 0.84056 1.55359 1.60897 1.52282 1.17994 1.04482 0.73968 0.75395 0.74306 1.93513 1.86786 1.85325 1.33265 1.93500 1.44468 1.78893 1.81412 1.30336 1.11778 1.13705 1.16073 1.18823 0.93801 0.92173 0.97152 1.21499 1.10960 0.97060 1.27995 0.90355 1.26098 0.95094 1.02054 0.97044 1.70093 1.18643 1.26449 1.42293 0.85398 0.78387 0.77482 0.79195 1.18804 1.21275 1.18715 1.18694 0.93419 0.95146 1.08362 1.21270 0.94822 0.97184 0.97387 1.21179 0.94538 0.99072 1.01383 1.21212 1.01487 0.91472 0.95781 1.20828 0.90879 0.99897 1.03570 1.18813 0.94583 0.87143 0.95836 1.67524 1.06090 1.30132 1.25152 0.92290 0.88615 0.90495 0.93018 0.89541 0.91716 0.82732 0.87546 0.88179 0.74184 0.83339 0.83499 0.97674 0.97358 0.92489 0.83945 0.83535 0.82919 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.27 127.77 1.31 2.23 16 2 N -0.62 -10.51 3.38 -753.78 -2.55 -13.06 16 3 C 0.10 1.35 10.49 127.77 1.34 2.69 16 4 C 0.41 9.18 7.37 133.65 0.99 10.17 16 5 C -0.21 -4.29 8.83 22.29 0.20 -4.10 16 6 C 0.00 -0.02 5.31 -19.66 -0.10 -0.12 16 7 C 0.15 2.89 5.58 85.63 0.48 3.36 16 8 N -1.10 -25.71 5.88 -190.77 -1.12 -26.83 16 9 S 2.62 87.36 5.46 -56.49 -0.31 87.05 16 10 O -1.00 -40.53 18.08 -127.65 -2.31 -42.83 16 11 O -0.99 -38.81 17.50 -127.65 -2.23 -41.04 16 12 C -0.59 -20.26 6.01 71.98 0.43 -19.83 16 13 C 0.02 0.98 4.98 29.85 0.15 1.12 16 14 C -0.54 -28.69 9.11 25.60 0.23 -28.46 16 15 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 16 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 17 N -0.94 -56.14 13.29 21.44 0.28 -55.86 16 18 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 C -0.15 -3.38 5.74 -21.26 -0.12 -3.50 16 23 C -0.09 -1.66 9.32 22.31 0.21 -1.45 16 24 C -0.14 -2.32 9.96 22.05 0.22 -2.10 16 25 C -0.08 -1.25 9.94 22.03 0.22 -1.03 16 26 C -0.13 -2.62 9.98 22.34 0.22 -2.39 16 27 C 0.16 3.80 6.60 40.23 0.27 4.07 16 28 N -0.57 -14.13 9.00 -186.22 -1.68 -15.81 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.62 8.07 -2.39 -0.02 0.60 16 31 H 0.08 0.81 5.91 -2.39 -0.01 0.80 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 0.76 8.07 -2.39 -0.02 0.74 16 34 H 0.06 1.11 7.27 -2.39 -0.02 1.09 16 35 H 0.16 2.64 5.94 -2.91 -0.02 2.62 16 36 H 0.11 1.61 7.07 -2.39 -0.02 1.59 16 37 H 0.10 1.92 7.58 -2.39 -0.02 1.90 16 38 H 0.42 9.02 8.61 -96.75 -0.83 8.19 16 39 H 0.15 4.24 8.14 -2.39 -0.02 4.22 16 40 H 0.15 4.34 8.14 -2.39 -0.02 4.32 16 41 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.14 2.25 6.67 -2.91 -0.02 2.23 16 45 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -80.23 402.64 -1.22 -81.45 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.17 Total: 21.64 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 6.50 Total: -39.13 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -5.06 Total: -111.56 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -4.54 Total: -83.88 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 87.36 SS G_CDS: -0.31 Total: 87.05 kcal Total: -80.23 -1.22 -81.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072304095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.350 kcal (2) G-P(sol) polarization free energy of solvation -80.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds