Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46759 * 2 1 4 4 C 1.52993 * 109.47007 * 240.00382 * 2 1 3 5 5 C 1.50699 * 109.47335 * 119.99863 * 2 1 3 6 6 N 1.29946 * 126.28715 * 239.97470 * 5 2 1 7 7 O 1.21311 * 110.24566 * 179.73006 * 6 5 2 8 8 C 1.33635 * 109.81194 * 0.46905 * 7 6 5 9 9 C 1.50698 * 126.55211 * 179.80419 * 8 7 6 10 10 C 1.53007 * 109.46923 * 269.68816 * 9 8 7 11 11 C 1.53000 * 109.46969 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46958 * 180.02562 * 11 10 9 13 13 O 1.21289 * 120.00110 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99785 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99525 * 180.02562 * 14 12 11 16 16 H 1.07996 * 120.00066 * 326.97832 * 15 14 12 17 17 C 1.38958 * 119.99703 * 146.98626 * 15 14 12 18 18 N 1.31412 * 119.99701 * 336.62208 * 17 15 14 19 19 Si 1.86796 * 119.99884 * 156.62736 * 17 15 14 20 20 H 1.48504 * 109.47450 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46994 * 119.99795 * 19 17 15 22 22 H 1.48503 * 109.47147 * 239.99499 * 19 17 15 23 23 C 1.46496 * 120.00052 * 359.97438 * 14 12 11 24 24 C 1.53002 * 109.47219 * 95.35313 * 23 14 12 25 25 F 1.39893 * 109.47116 * 59.99511 * 24 23 14 26 26 F 1.39894 * 109.46992 * 179.97438 * 24 23 14 27 27 F 1.39900 * 109.46728 * 299.99393 * 24 23 14 28 28 N 1.31138 * 106.89832 * 359.54068 * 8 7 6 29 29 H 1.08998 * 109.47475 * 299.99419 * 1 2 3 30 30 H 1.08991 * 109.47652 * 59.99928 * 1 2 3 31 31 H 1.09008 * 109.46710 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47315 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47470 * 300.00135 * 3 2 1 34 34 H 1.09005 * 109.47265 * 60.00353 * 3 2 1 35 35 H 1.09004 * 109.47575 * 299.99510 * 4 2 1 36 36 H 1.09001 * 109.47587 * 59.99654 * 4 2 1 37 37 H 1.09004 * 109.47155 * 179.97438 * 4 2 1 38 38 H 1.09005 * 109.47147 * 29.68691 * 9 8 7 39 39 H 1.08997 * 109.47484 * 149.68972 * 9 8 7 40 40 H 1.08993 * 109.47012 * 299.99500 * 10 9 8 41 41 H 1.08997 * 109.46913 * 59.99806 * 10 9 8 42 42 H 1.08996 * 109.47611 * 300.00153 * 11 10 9 43 43 H 1.09005 * 109.47407 * 60.00212 * 11 10 9 44 44 H 0.96995 * 119.99506 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.47200 * 215.35292 * 23 14 12 46 46 H 1.09000 * 109.47318 * 335.34590 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 2.7829 -0.2001 2.1605 7 8 3.0091 -1.0275 3.0184 8 6 2.4144 -2.1818 2.7025 9 6 2.4524 -3.4590 3.5014 10 6 3.6428 -4.3076 3.0500 11 6 3.6817 -5.6041 3.8615 12 6 4.8546 -6.4397 3.4173 13 8 5.5875 -6.0376 2.5386 14 7 5.0891 -7.6338 3.9967 15 6 6.1564 -8.3937 3.5929 16 1 6.4779 -8.3687 2.5622 17 6 6.8244 -9.1961 4.5099 18 7 6.7704 -8.9135 5.7921 19 14 7.7990 -10.6764 3.9199 20 1 7.7025 -10.7753 2.4413 21 1 9.2225 -10.5204 4.3131 22 1 7.2476 -11.9098 4.5362 23 6 4.2042 -8.1192 5.0585 24 6 3.1413 -9.0399 4.4554 25 9 3.7644 -10.1274 3.8342 26 9 2.2966 -9.5038 5.4695 27 9 2.3912 -8.3304 3.5114 28 7 1.7868 -1.9890 1.5673 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 2.5557 -3.2223 4.5604 39 1 1.5286 -4.0150 3.3418 40 1 3.5395 -4.5444 1.9911 41 1 4.5666 -3.7516 3.2095 42 1 3.7852 -5.3671 4.9203 43 1 2.7579 -6.1603 3.7023 44 1 7.2364 -9.4738 6.4322 45 1 4.7885 -8.6719 5.7941 46 1 3.7187 -7.2719 5.5426 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075105608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -157.482835 kcal Electronic energy + Delta-G solvation = -33423.559066 eV Core-core repulsion = 28321.511291 eV Total energy + Delta-G solvation = -5102.047775 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.89253 -48.43980 -48.35053 -46.61242 -40.58861 -38.71194 -37.20752 -36.59956 -35.30834 -33.93063 -32.83580 -30.21698 -29.59641 -28.28953 -28.24466 -26.79543 -25.56745 -24.40663 -24.12041 -22.82171 -20.67457 -20.49431 -19.74672 -19.32754 -19.10236 -19.06479 -18.37588 -18.04960 -17.41305 -16.85455 -16.55572 -16.34507 -16.06429 -15.54279 -15.33777 -15.24528 -15.21244 -15.03662 -14.89190 -14.83516 -14.58973 -14.53159 -14.31483 -13.84636 -13.77634 -13.49110 -13.43128 -13.30272 -13.15887 -13.10332 -12.83906 -12.71859 -12.63633 -12.57564 -12.50907 -12.46547 -12.36462 -12.22800 -12.14984 -11.90959 -11.79862 -11.67945 -11.10483 -10.89923 -10.48385 -9.67857 -8.41946 -6.10844 0.12543 1.20270 1.34428 1.43106 1.53753 1.75550 1.84121 2.09217 2.27351 2.56291 2.72412 2.90851 2.99625 3.27903 3.29310 3.49570 3.68950 3.84771 3.86377 3.94130 3.99851 4.06846 4.22015 4.26515 4.45184 4.56575 4.61768 4.65626 4.67761 4.71794 4.75297 4.83330 4.86349 4.87246 4.88550 4.97412 5.01260 5.13553 5.21472 5.25734 5.30270 5.31846 5.48705 6.10757 6.36979 7.10641 7.15499 7.28761 7.89754 8.61189 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.002169 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.903657 B =12907.714626 C =13547.453594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.017 3.983 3 C -0.134 4.134 4 C -0.135 4.135 5 C 0.173 3.827 6 N -0.406 5.406 7 O 0.064 5.936 8 C 0.194 3.806 9 C -0.020 4.020 10 C -0.087 4.087 11 C -0.131 4.131 12 C 0.458 3.542 13 O -0.612 6.612 14 N -0.456 5.456 15 C -0.337 4.337 16 H 0.065 0.935 17 C 0.014 3.986 18 N -0.881 5.881 19 Si 0.964 3.036 20 H -0.276 1.276 21 H -0.276 1.276 22 H -0.265 1.265 23 C 0.056 3.944 24 C 0.434 3.566 25 F -0.191 7.191 26 F -0.183 7.183 27 F -0.189 7.189 28 N -0.499 5.499 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.043 0.957 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.278 0.722 45 H 0.139 0.861 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.558 12.157 -1.981 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 C -0.191 4.191 4 C -0.193 4.193 5 C -0.100 4.100 6 N -0.117 5.117 7 O 0.009 5.991 8 C -0.026 4.026 9 C -0.059 4.059 10 C -0.127 4.127 11 C -0.171 4.171 12 C 0.250 3.750 13 O -0.497 6.497 14 N -0.175 5.175 15 C -0.465 4.465 16 H 0.083 0.917 17 C -0.189 4.189 18 N -0.519 5.519 19 Si 0.789 3.211 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.190 1.190 23 C -0.071 4.071 24 C 0.378 3.622 25 F -0.173 7.173 26 F -0.164 7.164 27 F -0.170 7.170 28 N -0.233 5.233 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.156 0.844 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.082 12.978 -2.602 19.327 hybrid contribution 0.872 -1.283 -0.224 1.567 sum -13.210 11.695 -2.826 17.868 Atomic orbital electron populations 1.21817 0.90789 1.02873 1.03397 1.19253 0.97495 0.94747 0.86961 1.21805 1.00933 0.92887 1.03512 1.21850 1.00514 1.00768 0.96203 1.26392 0.95721 0.88725 0.99159 1.74598 1.19868 1.15246 1.01947 1.85262 1.56503 1.18044 1.39305 1.29386 0.89204 0.91850 0.92208 1.20498 1.01670 0.84079 0.99607 1.21098 0.97365 0.94456 0.99731 1.21720 0.96953 0.95497 1.02933 1.21481 0.88065 0.81387 0.84090 1.90527 1.52580 1.71869 1.34687 1.43450 1.24032 1.15924 1.34113 1.19296 1.09544 1.22721 0.94895 0.91673 1.25807 0.97189 1.00863 0.95014 1.69768 1.42440 1.37672 1.02041 0.85309 0.78063 0.79022 0.78729 1.20025 1.20126 1.18968 1.23061 0.90569 1.00205 0.93271 1.21761 0.82634 0.81243 0.76536 1.93146 1.82626 1.57671 1.83855 1.93137 1.73417 1.89933 1.59948 1.93094 1.78670 1.78046 1.67233 1.71867 1.24273 1.15117 1.12006 0.92851 0.88647 0.92318 0.93347 0.88625 0.92609 0.92524 0.88451 0.93790 0.84247 0.84898 0.93037 0.92300 0.85819 0.87102 0.91168 0.84370 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.46 71.98 0.61 -1.38 16 2 C 0.02 0.33 0.99 -52.93 -0.05 0.28 16 3 C -0.13 -2.18 7.97 71.98 0.57 -1.61 16 4 C -0.14 -2.43 8.46 71.98 0.61 -1.82 16 5 C 0.17 4.52 6.40 138.46 0.89 5.40 16 6 N -0.41 -11.50 11.47 -60.31 -0.69 -12.19 16 7 O 0.06 1.73 11.31 74.89 0.85 2.58 16 8 C 0.19 4.75 7.77 88.38 0.69 5.44 16 9 C -0.02 -0.36 5.84 29.85 0.17 -0.19 16 10 C -0.09 -2.36 4.49 30.60 0.14 -2.23 16 11 C -0.13 -3.75 4.12 29.85 0.12 -3.63 16 12 C 0.46 20.21 7.40 87.66 0.65 20.86 16 13 O -0.61 -32.76 15.79 -3.06 -0.05 -32.81 16 14 N -0.46 -21.07 2.49 -635.53 -1.58 -22.65 16 15 C -0.34 -17.96 8.23 84.04 0.69 -17.27 16 16 H 0.07 3.83 7.69 -2.91 -0.02 3.81 16 17 C 0.01 0.72 5.00 84.93 0.42 1.15 16 18 N -0.88 -43.30 11.21 21.67 0.24 -43.06 16 19 Si 0.96 41.17 29.61 68.60 2.03 43.20 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 C 0.06 2.07 4.98 86.38 0.43 2.50 16 24 C 0.43 15.49 3.29 71.98 0.24 15.73 16 25 F -0.19 -8.02 16.53 44.97 0.74 -7.28 16 26 F -0.18 -5.73 17.32 44.97 0.78 -4.95 16 27 F -0.19 -6.38 15.12 44.97 0.68 -5.70 16 28 N -0.50 -13.55 11.55 -303.20 -3.50 -17.05 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 41 H 0.06 1.80 8.10 -2.39 -0.02 1.78 16 42 H 0.12 2.69 7.42 -2.39 -0.02 2.67 16 43 H 0.11 2.74 6.20 -2.38 -0.01 2.73 16 44 H 0.28 12.77 8.31 -92.71 -0.77 12.00 16 45 H 0.14 5.79 5.26 -2.39 -0.01 5.77 16 46 H 0.14 3.85 6.25 -2.39 -0.01 3.83 16 Total: -1.00 -69.18 394.01 6.69 -62.49 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 1.02 Total: 14.17 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 6.18 Total: 23.24 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -5.53 Total: -94.94 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: 0.80 Total: -30.23 kcal Atomic # 9 Polarization: -20.13 SS G_CDS: 2.20 Total: -17.93 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -69.18 6.69 -62.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075105608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.998 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds