Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76200 * 100.00156 * 2 1 4 4 N 1.32498 * 119.82650 * 359.97438 * 3 2 1 5 5 C 1.31931 * 121.74542 * 179.97438 * 4 3 2 6 6 Cl 1.73603 * 119.39744 * 180.02562 * 5 4 3 7 7 C 1.38607 * 121.20253 * 0.02562 * 5 4 3 8 8 C 1.38226 * 119.51516 * 359.76410 * 7 5 4 9 9 C 1.40045 * 118.38809 * 0.47695 * 8 7 5 10 10 C 1.47306 * 120.60193 * 179.77848 * 9 8 7 11 11 O 1.21632 * 120.00225 * 179.71934 * 10 9 8 12 12 N 1.34777 * 119.99870 * 359.72203 * 10 9 8 13 13 C 1.39912 * 120.00290 * 175.47984 * 12 10 9 14 14 C 1.38946 * 119.99883 * 35.13849 * 13 12 10 15 15 C 1.37999 * 119.99173 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00621 * 0.02562 * 15 14 13 17 17 O 1.35778 * 119.99641 * 179.97438 * 16 15 14 18 18 C 1.34818 * 117.00209 * 354.65037 * 17 16 15 19 19 H 1.07997 * 119.99736 * 5.03428 * 18 17 16 20 20 C 1.38629 * 120.00289 * 185.03503 * 18 17 16 21 21 N 1.31572 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47318 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46954 * 119.99878 * 22 20 18 25 25 H 1.48500 * 109.46777 * 239.99641 * 22 20 18 26 26 C 1.38906 * 120.00969 * 0.24766 * 16 15 14 27 27 C 1.38008 * 120.00206 * 359.49471 * 26 16 15 28 28 H 1.09005 * 109.46907 * 59.99746 * 1 2 3 29 29 H 1.08992 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46879 * 300.00318 * 1 2 3 31 31 H 1.08004 * 120.24208 * 179.97438 * 7 5 4 32 32 H 1.08003 * 120.80473 * 180.23459 * 8 7 5 33 33 H 0.97010 * 119.99667 * 355.48752 * 12 10 9 34 34 H 1.07992 * 120.00184 * 0.02562 * 14 13 12 35 35 H 1.07997 * 119.99288 * 179.97438 * 15 14 13 36 36 H 0.97006 * 119.99998 * 180.02562 * 21 20 18 37 37 H 1.08000 * 120.00208 * 179.72457 * 26 16 15 38 38 H 1.07994 * 120.00137 * 180.23156 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0985 2.5839 -0.0005 5 6 1.2840 3.8901 0.0000 6 17 -0.0937 4.9464 -0.0001 7 6 2.5587 4.4343 0.0005 8 6 3.6573 3.5954 0.0055 9 6 3.4388 2.2122 -0.0004 10 6 4.5742 1.2736 -0.0004 11 8 4.3719 0.0743 -0.0003 12 7 5.8373 1.7440 -0.0003 13 6 6.9144 0.8562 0.0952 14 6 6.8409 -0.3929 -0.5090 15 6 7.9032 -1.2686 -0.4143 16 6 9.0456 -0.9018 0.2855 17 8 10.0905 -1.7638 0.3791 18 6 9.9133 -2.9982 -0.1331 19 1 9.0033 -3.2373 -0.6633 20 6 10.8992 -3.9606 0.0207 21 7 12.0080 -3.6691 0.6661 22 14 10.6533 -5.6712 -0.6884 23 1 9.3324 -5.7423 -1.3631 24 1 11.7275 -5.9580 -1.6730 25 1 10.7051 -6.6730 0.4065 26 6 9.1170 0.3447 0.8945 27 6 8.0570 1.2228 0.7955 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.6926 5.5060 0.0005 32 1 4.6599 3.9971 0.0098 33 1 5.9995 2.6981 -0.0664 34 1 5.9525 -0.6782 -1.0528 35 1 7.8459 -2.2396 -0.8836 36 1 12.6981 -4.3424 0.7734 37 1 10.0036 0.6280 1.4423 38 1 8.1141 2.1933 1.2658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075108848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = 8.451314 kcal Electronic energy + Delta-G solvation = -26024.845217 eV Core-core repulsion = 21985.926811 eV Total energy + Delta-G solvation = -4038.918406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03937 -39.76632 -38.63242 -37.16249 -36.55360 -34.38151 -33.17892 -32.21289 -31.69989 -30.24376 -29.01417 -28.08599 -25.50591 -24.79067 -24.42049 -22.49149 -21.71535 -20.36041 -19.04772 -18.21919 -17.79553 -17.58213 -16.89870 -16.28279 -15.89845 -15.61991 -15.14213 -14.78663 -14.51319 -14.40463 -14.17875 -13.93973 -13.71311 -13.62823 -13.56290 -13.31758 -12.92605 -12.62641 -12.39207 -12.28141 -11.87717 -11.79683 -11.66959 -11.56981 -11.09561 -11.03690 -10.75085 -10.71235 -10.43315 -10.25491 -9.86060 -9.73015 -9.59559 -9.20978 -8.75062 -8.24720 -7.84319 -6.98560 -6.46868 -4.04181 -0.02301 0.49184 1.09496 1.32817 2.03842 2.11872 2.18736 2.58840 3.02399 3.12492 3.15136 3.20582 3.30043 3.96460 4.00979 4.24931 4.31330 4.44464 4.53125 4.65163 5.03222 5.05390 5.07092 5.17941 5.23080 5.30721 5.61535 5.64022 5.68051 5.72443 6.05529 6.12286 6.28010 6.66533 6.78826 6.90615 6.95140 7.03443 7.27173 7.40409 7.53907 7.71384 7.98311 8.15411 8.99076 9.67495 10.70896 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.019232 B = 0.002015 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.552276 B =13895.569391 C =15209.547155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 S 0.071 5.929 3 C 0.169 3.831 4 N -0.490 5.490 5 C 0.216 3.784 6 Cl -0.023 7.023 7 C -0.176 4.176 8 C -0.011 4.011 9 C -0.173 4.173 10 C 0.549 3.451 11 O -0.492 6.492 12 N -0.648 5.648 13 C 0.029 3.971 14 C -0.060 4.060 15 C -0.220 4.220 16 C 0.148 3.852 17 O -0.175 6.175 18 C -0.390 4.390 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.178 4.178 27 C -0.089 4.089 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.400 0.600 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.270 0.730 37 H 0.122 0.878 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.871 17.027 -1.802 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.361 4.361 2 S 0.315 5.685 3 C -0.080 4.080 4 N -0.205 5.205 5 C 0.046 3.954 6 Cl 0.006 6.994 7 C -0.201 4.201 8 C -0.038 4.038 9 C -0.186 4.186 10 C 0.336 3.664 11 O -0.369 6.369 12 N -0.293 5.293 13 C -0.063 4.063 14 C -0.080 4.080 15 C -0.240 4.240 16 C 0.094 3.906 17 O -0.078 6.078 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.198 4.198 27 C -0.110 4.110 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.235 0.765 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.898 14.680 -1.630 25.591 hybrid contribution -0.368 1.351 -0.341 1.441 sum -21.267 16.030 -1.971 26.704 Atomic orbital electron populations 1.23888 0.99779 1.05974 1.06453 1.87483 1.01670 0.92858 1.86484 1.23538 0.89468 1.00363 0.94669 1.67507 1.33412 1.02438 1.17187 1.21900 0.88372 0.89324 0.95789 1.98429 1.43325 1.61549 1.96105 1.21667 0.90396 1.02222 1.05854 1.21697 0.99857 0.91253 0.90993 1.20579 0.93678 0.94587 1.09775 1.17739 0.82478 0.87965 0.78220 1.90757 1.83089 1.14824 1.48235 1.42951 1.04233 1.09812 1.72289 1.17191 0.88727 0.93028 1.07382 1.20859 0.97944 0.92293 0.96896 1.21110 0.94413 1.01780 1.06729 1.19424 0.87566 0.90736 0.92879 1.83973 1.32262 1.21953 1.69638 1.21401 1.05272 0.85069 1.34847 0.88872 1.25299 0.94851 0.99586 0.96818 1.70055 1.06391 1.34782 1.38398 0.85641 0.78798 0.80368 0.78630 1.18985 1.20149 1.20106 1.19993 1.00126 0.93332 1.06363 1.20347 0.92946 0.99106 0.98553 0.89650 0.88131 0.89634 0.82838 0.82896 0.76472 0.85525 0.85109 0.92043 0.85999 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 9.65 101.05 0.97 -0.80 16 2 S 0.07 0.88 19.63 -107.50 -2.11 -1.23 16 3 C 0.17 2.04 7.02 -16.37 -0.11 1.92 16 4 N -0.49 -5.49 9.10 -8.78 -0.08 -5.57 16 5 C 0.22 1.99 7.27 -17.37 -0.13 1.87 16 6 Cl -0.02 -0.18 29.10 -51.86 -1.51 -1.69 16 7 C -0.18 -1.23 9.84 -39.45 -0.39 -1.62 16 8 C -0.01 -0.08 9.63 -38.91 -0.37 -0.45 16 9 C -0.17 -1.93 5.91 -104.64 -0.62 -2.55 16 10 C 0.55 7.58 7.59 -12.57 -0.10 7.48 16 11 O -0.49 -8.40 11.23 5.25 0.06 -8.34 16 12 N -0.65 -8.21 5.28 -10.83 -0.06 -8.26 16 13 C 0.03 0.48 6.30 -83.65 -0.53 -0.05 16 14 C -0.06 -1.16 8.69 -39.41 -0.34 -1.50 16 15 C -0.22 -4.83 9.16 -39.42 -0.36 -5.19 16 16 C 0.15 3.50 6.65 -39.09 -0.26 3.24 16 17 O -0.18 -4.91 9.75 0.00 0.00 -4.91 16 18 C -0.39 -10.80 9.48 30.88 0.29 -10.51 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.01 13.67 55.48 0.76 -24.25 16 22 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 C -0.18 -3.57 9.98 -39.42 -0.39 -3.97 16 27 C -0.09 -1.47 9.96 -39.41 -0.39 -1.86 16 28 H 0.08 0.78 8.12 -51.91 -0.42 0.36 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.08 0.79 8.12 -51.91 -0.42 0.37 16 31 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.15 0.61 6.52 -52.48 -0.34 0.27 16 33 H 0.40 3.40 6.93 -40.82 -0.28 3.12 16 34 H 0.13 2.40 6.22 -52.49 -0.33 2.08 16 35 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 36 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -32.75 358.63 -8.57 -41.32 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.19 Total: 5.06 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -2.82 Total: -13.02 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.62 Total: -38.09 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.06 Total: -13.25 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.11 Total: -1.23 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.75 -8.57 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075108848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.773 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds