Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76200 * 100.00156 * 2 1 4 4 N 1.32498 * 119.82650 * 359.97438 * 3 2 1 5 5 C 1.31931 * 121.74542 * 179.97438 * 4 3 2 6 6 Cl 1.73603 * 119.39744 * 180.02562 * 5 4 3 7 7 C 1.38607 * 121.20253 * 0.02562 * 5 4 3 8 8 C 1.38226 * 119.51516 * 359.76410 * 7 5 4 9 9 C 1.40045 * 118.38809 * 0.47695 * 8 7 5 10 10 C 1.47306 * 120.60193 * 179.77848 * 9 8 7 11 11 O 1.21632 * 120.00225 * 179.71934 * 10 9 8 12 12 N 1.34777 * 119.99870 * 359.72203 * 10 9 8 13 13 C 1.39912 * 120.00290 * 175.47984 * 12 10 9 14 14 C 1.38946 * 119.99883 * 35.13849 * 13 12 10 15 15 C 1.37999 * 119.99173 * 180.02562 * 14 13 12 16 16 C 1.38906 * 120.00621 * 0.02562 * 15 14 13 17 17 O 1.35778 * 119.99641 * 179.97438 * 16 15 14 18 18 C 1.34818 * 117.00209 * 354.65037 * 17 16 15 19 19 H 1.07997 * 119.99736 * 5.03428 * 18 17 16 20 20 C 1.38629 * 120.00289 * 185.03503 * 18 17 16 21 21 N 1.31572 * 119.99896 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99969 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47318 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46954 * 119.99878 * 22 20 18 25 25 H 1.48500 * 109.46777 * 239.99641 * 22 20 18 26 26 C 1.38906 * 120.00969 * 0.24766 * 16 15 14 27 27 C 1.38008 * 120.00206 * 359.49471 * 26 16 15 28 28 H 1.09005 * 109.46907 * 59.99746 * 1 2 3 29 29 H 1.08992 * 109.47654 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46879 * 300.00318 * 1 2 3 31 31 H 1.08004 * 120.24208 * 179.97438 * 7 5 4 32 32 H 1.08003 * 120.80473 * 180.23459 * 8 7 5 33 33 H 0.97010 * 119.99667 * 355.48752 * 12 10 9 34 34 H 1.07992 * 120.00184 * 0.02562 * 14 13 12 35 35 H 1.07997 * 119.99288 * 179.97438 * 15 14 13 36 36 H 0.97006 * 119.99998 * 180.02562 * 21 20 18 37 37 H 1.08000 * 120.00208 * 179.72457 * 26 16 15 38 38 H 1.07994 * 120.00137 * 180.23156 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0985 2.5839 -0.0005 5 6 1.2840 3.8901 0.0000 6 17 -0.0937 4.9464 -0.0001 7 6 2.5587 4.4343 0.0005 8 6 3.6573 3.5954 0.0055 9 6 3.4388 2.2122 -0.0004 10 6 4.5742 1.2736 -0.0004 11 8 4.3719 0.0743 -0.0003 12 7 5.8373 1.7440 -0.0003 13 6 6.9144 0.8562 0.0952 14 6 6.8409 -0.3929 -0.5090 15 6 7.9032 -1.2686 -0.4143 16 6 9.0456 -0.9018 0.2855 17 8 10.0905 -1.7638 0.3791 18 6 9.9133 -2.9982 -0.1331 19 1 9.0033 -3.2373 -0.6633 20 6 10.8992 -3.9606 0.0207 21 7 12.0080 -3.6691 0.6661 22 14 10.6533 -5.6712 -0.6884 23 1 9.3324 -5.7423 -1.3631 24 1 11.7275 -5.9580 -1.6730 25 1 10.7051 -6.6730 0.4065 26 6 9.1170 0.3447 0.8945 27 6 8.0570 1.2228 0.7955 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.6926 5.5060 0.0005 32 1 4.6599 3.9971 0.0098 33 1 5.9995 2.6981 -0.0664 34 1 5.9525 -0.6782 -1.0528 35 1 7.8459 -2.2396 -0.8836 36 1 12.6981 -4.3424 0.7734 37 1 10.0036 0.6280 1.4423 38 1 8.1141 2.1933 1.2658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075108848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -12.770331 kcal Electronic energy + Delta-G solvation = -26025.765456 eV Core-core repulsion = 21985.926811 eV Total energy + Delta-G solvation = -4039.838645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.043 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99487 -40.95825 -40.13195 -38.17625 -37.76368 -35.64045 -34.30555 -33.86438 -32.51774 -31.82555 -29.77804 -29.57404 -27.34291 -25.83180 -25.13722 -23.97055 -23.14363 -21.61765 -20.17720 -19.65755 -19.10323 -18.54535 -18.37057 -17.47499 -16.74563 -16.64274 -16.34133 -16.16778 -15.99409 -15.53157 -15.38737 -15.26169 -15.12823 -14.65825 -14.61913 -14.38207 -14.18495 -14.00900 -13.58882 -13.32398 -13.23139 -13.10297 -12.92602 -12.72320 -12.49800 -12.45456 -12.11290 -12.00937 -11.39475 -11.33469 -11.08104 -10.99463 -10.64667 -10.61260 -10.48645 -9.80706 -8.81276 -8.54835 -8.46224 -6.12580 -0.80495 -0.16655 0.33532 0.54569 0.58943 0.60080 1.33293 1.35784 1.42121 1.53368 1.60907 1.94408 2.18500 2.40980 2.83658 3.16636 3.35046 3.45680 3.54002 3.57571 3.79104 3.98008 4.14075 4.15131 4.30435 4.34173 4.50511 4.54997 4.66942 4.68977 4.75642 4.91279 5.06993 5.10702 5.14508 5.35806 5.45693 5.59026 5.72523 6.03647 6.15054 6.17399 6.43295 6.98690 7.08780 7.78352 8.76431 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.019232 B = 0.002015 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.552276 B =13895.569391 C =15209.547155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 S 0.005 5.995 3 C 0.160 3.840 4 N -0.506 5.506 5 C 0.203 3.797 6 Cl -0.013 7.013 7 C -0.159 4.159 8 C 0.006 3.994 9 C -0.187 4.187 10 C 0.550 3.450 11 O -0.528 6.528 12 N -0.636 5.636 13 C 0.062 3.938 14 C -0.072 4.072 15 C -0.230 4.230 16 C 0.108 3.892 17 O -0.227 6.227 18 C -0.411 4.411 19 H 0.097 0.903 20 C -0.021 4.021 21 N -0.917 5.917 22 Si 1.015 2.985 23 H -0.256 1.256 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.181 4.181 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.194 0.806 32 H 0.197 0.803 33 H 0.426 0.574 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.273 0.727 37 H 0.129 0.871 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.918 20.711 -1.928 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.340 4.340 2 S 0.249 5.751 3 C -0.089 4.089 4 N -0.222 5.222 5 C 0.034 3.966 6 Cl 0.016 6.984 7 C -0.183 4.183 8 C -0.021 4.021 9 C -0.201 4.201 10 C 0.339 3.661 11 O -0.407 6.407 12 N -0.283 5.283 13 C -0.031 4.031 14 C -0.092 4.092 15 C -0.250 4.250 16 C 0.057 3.943 17 O -0.134 6.134 18 C -0.487 4.487 19 H 0.115 0.885 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.834 3.166 23 H -0.180 1.180 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.200 4.200 27 C -0.091 4.091 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.211 0.789 32 H 0.214 0.786 33 H 0.266 0.734 34 H 0.145 0.855 35 H 0.133 0.867 36 H 0.082 0.918 37 H 0.147 0.853 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -23.008 18.463 -1.766 29.553 hybrid contribution -0.132 0.647 -0.288 0.720 sum -23.140 19.110 -2.054 30.081 Atomic orbital electron populations 1.23786 0.96857 1.06944 1.06371 1.87606 1.04903 0.95290 1.87345 1.23360 0.90161 0.99594 0.95832 1.67434 1.33465 1.03465 1.17853 1.22332 0.89843 0.88930 0.95525 1.98438 1.43148 1.60833 1.95993 1.22124 0.88959 1.04109 1.03156 1.22165 1.02080 0.89253 0.88562 1.20398 0.92047 0.95736 1.11893 1.18156 0.83123 0.87937 0.76913 1.90773 1.83775 1.16802 1.49348 1.42788 1.02824 1.10563 1.72114 1.17288 0.89574 0.92243 1.04042 1.20936 0.97089 0.93428 0.97738 1.21090 0.95029 1.01889 1.06956 1.19973 0.87717 0.91788 0.94809 1.83935 1.34537 1.22674 1.72214 1.21789 1.05768 0.85840 1.35294 0.88542 1.26501 0.94352 1.03815 0.97204 1.70179 1.07726 1.36449 1.41186 0.84581 0.79219 0.74673 0.78084 1.17966 1.19090 1.19318 1.20339 1.01620 0.92446 1.05634 1.20795 0.90945 1.00399 0.96999 0.89593 0.86678 0.89646 0.78918 0.78636 0.73400 0.85454 0.86744 0.91821 0.85314 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.65 113.37 1.09 -2.00 16 2 S 0.00 0.12 19.63 -56.49 -1.11 -0.99 16 3 C 0.16 3.63 7.02 85.17 0.60 4.23 16 4 N -0.51 -10.36 9.10 -181.70 -1.65 -12.01 16 5 C 0.20 3.07 7.27 84.77 0.62 3.69 16 6 Cl -0.01 -0.17 29.10 -2.72 -0.08 -0.24 16 7 C -0.16 -1.40 9.84 22.35 0.22 -1.18 16 8 C 0.01 0.06 9.63 22.71 0.22 0.28 16 9 C -0.19 -3.63 5.91 -19.87 -0.12 -3.75 16 10 C 0.55 13.84 7.59 86.63 0.66 14.50 16 11 O -0.53 -17.77 11.23 -4.13 -0.05 -17.82 16 12 N -0.64 -13.44 5.28 -306.41 -1.62 -15.06 16 13 C 0.06 1.89 6.30 38.19 0.24 2.13 16 14 C -0.07 -2.76 8.69 22.38 0.19 -2.56 16 15 C -0.23 -10.48 9.16 22.37 0.20 -10.28 16 16 C 0.11 5.30 6.65 22.59 0.15 5.45 16 17 O -0.23 -13.56 9.75 -22.92 -0.22 -13.78 16 18 C -0.41 -24.19 9.48 67.91 0.64 -23.54 16 19 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 20 C -0.02 -1.20 5.49 84.83 0.47 -0.74 16 21 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16 22 Si 1.01 43.72 29.55 68.60 2.03 45.75 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 C -0.18 -7.11 9.98 22.38 0.22 -6.89 16 27 C -0.07 -2.09 9.96 22.38 0.22 -1.87 16 28 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 29 H 0.11 1.68 8.14 -2.40 -0.02 1.67 16 30 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 31 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.20 0.10 6.52 -2.91 -0.02 0.08 16 33 H 0.43 4.60 6.93 -92.70 -0.64 3.96 16 34 H 0.13 4.88 6.22 -2.91 -0.02 4.86 16 35 H 0.11 5.46 5.63 -2.91 -0.02 5.45 16 36 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 37 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -79.58 358.63 3.74 -75.85 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.51 Total: 16.70 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.63 Total: -22.54 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.98 Total: -82.93 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.27 Total: -31.60 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -1.11 Total: -0.99 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.24 kcal Total: -79.58 3.74 -75.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075108848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.077 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds