Wall clock time and date at job start Tue Mar 31 2020 06:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86802 * 119.99723 * 2 1 4 4 H 1.48504 * 109.47218 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47460 * 300.00876 * 3 2 1 6 6 H 1.48505 * 109.46861 * 60.00634 * 3 2 1 7 7 C 1.39005 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00064 * 217.20951 * 7 2 1 9 9 N 1.36871 * 120.00224 * 37.20501 * 7 2 1 10 10 C 1.46506 * 120.00082 * 239.58268 * 9 7 2 11 11 C 1.50695 * 109.47057 * 340.69450 * 10 9 7 12 12 C 1.38245 * 119.99717 * 263.34583 * 11 10 9 13 13 C 1.38237 * 119.99524 * 179.76350 * 12 11 10 14 14 C 1.38238 * 120.00332 * 0.51202 * 13 12 11 15 15 C 1.38234 * 119.99833 * 359.73887 * 14 13 12 16 16 C 1.38233 * 120.00453 * 83.61782 * 11 10 9 17 17 C 1.34774 * 120.00233 * 59.58286 * 9 7 2 18 18 O 1.21738 * 119.99846 * 4.19461 * 17 9 7 19 19 C 1.46638 * 120.00236 * 184.18867 * 17 9 7 20 20 C 1.40004 * 120.34424 * 121.97120 * 19 17 9 21 21 C 1.38468 * 119.18043 * 179.97438 * 20 19 17 22 22 C 1.38921 * 119.87441 * 359.97438 * 21 20 19 23 23 C 1.46421 * 119.64552 * 179.97438 * 22 21 20 24 24 C 1.36752 * 126.00005 * 179.71314 * 23 22 21 25 25 C 1.40363 * 106.70170 * 179.90888 * 24 23 22 26 26 C 1.35144 * 107.12789 * 0.35685 * 25 24 23 27 27 O 1.34056 * 108.78889 * 359.77935 * 26 25 24 28 28 N 1.36905 * 120.70983 * 359.97438 * 22 21 20 29 29 H 0.97001 * 119.57481 * 180.02562 * 28 22 21 30 30 C 1.34637 * 120.84396 * 0.02562 * 28 22 21 31 31 O 1.21877 * 119.95474 * 180.02562 * 30 28 22 32 32 H 0.97001 * 120.00416 * 4.93094 * 1 2 3 33 33 H 1.08997 * 109.46869 * 100.69201 * 10 9 7 34 34 H 1.08996 * 109.47407 * 220.69141 * 10 9 7 35 35 H 1.07988 * 119.99883 * 359.97438 * 12 11 10 36 36 H 1.07997 * 119.99928 * 180.22458 * 13 12 11 37 37 H 1.07992 * 120.00000 * 179.72159 * 14 13 12 38 38 H 1.07998 * 120.00128 * 179.97438 * 15 14 13 39 39 H 1.07999 * 119.99704 * 0.02562 * 16 11 10 40 40 H 1.08000 * 120.41378 * 0.25593 * 20 19 17 41 41 H 1.07997 * 120.06006 * 180.02562 * 21 20 19 42 42 H 1.08004 * 126.64765 * 0.02562 * 24 23 22 43 43 H 1.07994 * 126.43659 * 180.15680 * 25 24 23 44 44 H 1.08000 * 125.61081 * 179.75097 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 -0.0006 5 1 1.8890 2.3966 -1.2124 6 1 1.8891 2.3964 1.2126 7 6 2.0090 -1.2038 -0.0005 8 1 2.9242 -1.2992 0.5650 9 7 1.5337 -2.2682 -0.7177 10 6 1.2060 -3.5231 -0.0362 11 6 1.8980 -3.5634 1.3019 12 6 3.1034 -4.2265 1.4369 13 6 3.7405 -4.2594 2.6633 14 6 3.1671 -3.6382 3.7570 15 6 1.9591 -2.9796 3.6232 16 6 1.3246 -2.9422 2.3956 17 6 1.3670 -2.1621 -2.0509 18 8 1.7105 -1.1469 -2.6283 19 6 0.7720 -3.2694 -2.8059 20 6 -0.3886 -3.0668 -3.5623 21 6 -0.9296 -4.1292 -4.2664 22 6 -0.3188 -5.3759 -4.2154 23 6 -0.8956 -6.4960 -4.9614 24 6 -0.4014 -7.7703 -5.0078 25 6 -1.2643 -8.5078 -5.8334 26 6 -2.2301 -7.6622 -6.2561 27 8 -2.0043 -6.4507 -5.7285 28 7 0.8165 -5.5684 -3.4750 29 1 1.2296 -6.4458 -3.4514 30 6 1.3670 -4.5556 -2.7794 31 8 2.3783 -4.7451 -2.1260 32 1 -0.4851 0.8369 -0.0722 33 1 0.1278 -3.5861 0.1103 34 1 1.5400 -4.3643 -0.6435 35 1 3.5490 -4.7159 0.5836 36 1 4.6841 -4.7743 2.7680 37 1 3.6626 -3.6677 4.7161 38 1 1.5108 -2.4946 4.4777 39 1 0.3804 -2.4283 2.2912 40 1 -0.8535 -2.0927 -3.5999 41 1 -1.8243 -3.9887 -4.8548 42 1 0.4807 -8.1384 -4.5050 43 1 -1.1719 -9.5537 -6.0862 44 1 -3.0488 -7.9198 -6.9116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075125049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:31 Heat of formation + Delta-G solvation = 36.636979 kcal Electronic energy + Delta-G solvation = -32208.912334 eV Core-core repulsion = 27866.729224 eV Total energy + Delta-G solvation = -4342.183110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.04231 -41.04596 -38.77202 -37.72780 -36.96105 -34.42594 -33.87731 -33.07124 -32.01729 -31.33367 -30.26305 -30.12994 -28.57713 -25.92552 -25.12509 -23.87665 -23.39129 -21.88069 -21.78624 -21.27517 -20.56749 -20.08576 -18.83689 -17.64351 -17.28766 -16.59059 -16.48793 -16.24647 -15.83487 -15.71761 -15.21534 -14.87864 -14.73114 -14.39725 -14.24786 -13.97622 -13.70272 -13.43983 -13.35757 -13.13056 -12.76323 -12.58464 -12.48031 -12.30411 -12.13797 -11.99711 -11.74581 -11.35868 -11.11809 -10.88782 -10.56719 -10.45985 -10.31014 -10.25021 -10.15060 -10.08585 -9.75035 -9.20230 -8.58588 -8.31057 -8.14731 -7.91246 -7.55312 -7.09594 -6.19194 -3.90757 0.08558 1.46266 1.90564 2.05348 2.09627 2.17580 2.30842 3.05822 3.37118 3.50567 3.58218 3.61647 3.97932 4.12196 4.38367 4.43951 4.50495 4.56572 4.76672 4.95000 5.07278 5.18835 5.26475 5.33270 5.39583 5.43828 5.54825 5.59163 5.69364 5.77199 5.88452 5.89581 6.07691 6.21300 6.24261 6.31874 6.37309 6.47588 6.50962 6.59376 6.63711 6.78766 6.87724 6.90937 7.16488 7.22627 7.56275 7.70541 7.76874 8.12218 8.41691 9.06706 9.11009 9.57292 10.21610 10.78650 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.003194 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.923768 B = 8764.415480 C =10501.815515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.094 3.906 3 Si 0.888 3.112 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.343 4.343 8 H 0.077 0.923 9 N -0.416 5.416 10 C 0.108 3.892 11 C -0.049 4.049 12 C -0.107 4.107 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.133 4.133 16 C -0.074 4.074 17 C 0.544 3.456 18 O -0.558 6.558 19 C -0.207 4.207 20 C 0.011 3.989 21 C -0.182 4.182 22 C 0.215 3.785 23 C 0.008 3.992 24 C -0.176 4.176 25 C -0.212 4.212 26 C -0.018 4.018 27 O -0.154 6.154 28 N -0.592 5.592 29 H 0.412 0.588 30 C 0.528 3.472 31 O -0.519 6.519 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 -17.652 -7.791 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.117 4.117 3 Si 0.714 3.286 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.136 5.136 10 C -0.014 4.014 11 C -0.049 4.049 12 C -0.126 4.126 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.092 4.092 17 C 0.331 3.669 18 O -0.439 6.439 19 C -0.214 4.214 20 C -0.011 4.011 21 C -0.205 4.205 22 C 0.106 3.894 23 C -0.043 4.043 24 C -0.196 4.196 25 C -0.231 4.231 26 C -0.087 4.087 27 O -0.048 6.048 28 N -0.227 5.227 29 H 0.250 0.750 30 C 0.329 3.671 31 O -0.400 6.400 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.974 -16.707 -7.577 19.293 hybrid contribution 0.337 0.243 -0.149 0.441 sum -5.638 -16.463 -7.727 19.040 Atomic orbital electron populations 1.70206 1.07104 1.28301 1.40922 1.25253 0.94068 0.99834 0.92520 0.86579 0.81684 0.83207 0.77098 1.19151 1.20418 1.21646 1.18641 1.06712 0.89368 1.32112 0.90536 1.43037 1.56972 1.10242 1.03328 1.21283 0.96989 0.91518 0.91593 1.19697 0.94715 0.95570 0.94916 1.21055 0.94921 0.99620 0.96973 1.20937 0.99638 1.01430 0.93362 1.20933 0.96337 0.99732 0.98090 1.21022 0.96093 1.00482 0.97541 1.21076 1.00386 0.96016 0.91741 1.17195 0.81628 0.85569 0.82534 1.90669 1.53331 1.31286 1.68644 1.21762 0.99469 0.94601 1.05599 1.21726 0.91612 0.99088 0.88721 1.20941 1.03341 0.90251 1.05960 1.17666 0.87601 0.91681 0.92434 1.19713 0.90297 0.94049 1.00193 1.21951 1.02379 0.92288 1.02946 1.21761 0.96924 1.01640 1.02802 1.24394 1.01865 0.81463 1.00967 1.84075 1.37831 1.33285 1.49658 1.43620 1.22726 1.15185 1.41157 0.74993 1.16905 0.85553 0.84128 0.80526 1.90889 1.24518 1.82931 1.41679 0.92628 0.93997 0.89027 0.86451 0.87178 0.87305 0.87043 0.85902 0.83539 0.83045 0.82808 0.82662 0.77210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.71 13.84 55.50 0.77 -22.94 16 2 C 0.09 2.68 4.46 -17.45 -0.08 2.60 16 3 Si 0.89 22.83 29.68 -169.99 -5.05 17.78 16 4 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.34 -9.78 6.72 -15.02 -0.10 -9.88 16 8 H 0.08 2.27 7.69 -52.48 -0.40 1.87 16 9 N -0.42 -11.01 2.83 -117.60 -0.33 -11.35 16 10 C 0.11 2.46 5.40 -5.19 -0.03 2.43 16 11 C -0.05 -1.05 4.03 -104.62 -0.42 -1.47 16 12 C -0.11 -2.13 9.68 -39.58 -0.38 -2.51 16 13 C -0.14 -2.37 10.05 -39.58 -0.40 -2.77 16 14 C -0.13 -2.24 10.05 -39.58 -0.40 -2.63 16 15 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 16 C -0.07 -1.54 8.88 -39.58 -0.35 -1.89 16 17 C 0.54 14.33 6.55 -12.87 -0.08 14.25 16 18 O -0.56 -16.63 16.51 5.15 0.09 -16.55 16 19 C -0.21 -4.26 5.03 -104.51 -0.53 -4.79 16 20 C 0.01 0.18 9.87 -38.84 -0.38 -0.20 16 21 C -0.18 -2.31 9.68 -39.24 -0.38 -2.69 16 22 C 0.22 2.57 6.79 -82.06 -0.56 2.01 16 23 C 0.01 0.08 7.01 -36.83 -0.26 -0.18 16 24 C -0.18 -1.41 10.34 -39.32 -0.41 -1.81 16 25 C -0.21 -1.37 10.87 -39.88 -0.43 -1.80 16 26 C -0.02 -0.11 12.08 29.63 0.36 0.25 16 27 O -0.15 -1.39 10.33 4.71 0.05 -1.34 16 28 N -0.59 -7.74 5.26 -11.16 -0.06 -7.80 16 29 H 0.41 4.17 7.59 -40.82 -0.31 3.86 16 30 C 0.53 9.64 6.67 -14.98 -0.10 9.54 16 31 O -0.52 -10.85 14.54 5.03 0.07 -10.78 16 32 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 33 H 0.04 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.09 2.00 3.45 -52.81 -0.18 1.82 16 35 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 36 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.12 2.71 8.06 -52.49 -0.42 2.29 16 40 H 0.15 2.44 8.06 -52.49 -0.42 2.01 16 41 H 0.15 1.51 7.84 -52.49 -0.41 1.10 16 42 H 0.15 0.94 7.37 -52.48 -0.39 0.55 16 43 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.21 0.43 8.06 -52.49 -0.42 0.00 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -36.52 383.33 -8.65 -45.17 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.63 Total: 6.39 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -5.33 Total: -4.36 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.38 Total: -42.09 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: 0.21 Total: -28.67 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.05 Total: 17.78 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.52 -8.65 -45.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075125049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.806 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds