Wall clock time and date at job start Tue Mar 31 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86806 * 120.00065 * 2 1 4 4 H 1.48496 * 109.46915 * 274.98619 * 3 2 1 5 5 H 1.48499 * 109.46944 * 34.98329 * 3 2 1 6 6 H 1.48491 * 109.47267 * 154.98756 * 3 2 1 7 7 C 1.39014 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99637 * 163.27053 * 7 2 1 9 9 N 1.36891 * 119.99905 * 343.27516 * 7 2 1 10 10 C 1.38206 * 125.61984 * 140.02024 * 9 7 2 11 11 C 1.46885 * 125.43740 * 0.06401 * 10 9 7 12 12 O 1.21668 * 119.99887 * 27.32365 * 11 10 9 13 13 N 1.34784 * 120.00277 * 207.32413 * 11 10 9 14 14 C 1.47224 * 121.34207 * 188.92141 * 13 11 10 15 15 C 1.52818 * 108.08472 * 115.69316 * 14 13 11 16 16 C 1.50549 * 110.77933 * 47.45555 * 15 14 13 17 17 N 1.32586 * 118.09289 * 160.35767 * 16 15 14 18 18 N 1.28062 * 122.73820 * 179.56240 * 17 16 15 19 19 C 1.32532 * 122.09774 * 359.96508 * 18 17 16 20 20 N 1.39052 * 120.32623 * 180.24149 * 19 18 17 21 21 C 1.39360 * 119.34965 * 0.21149 * 19 18 17 22 22 C 1.38028 * 122.61751 * 340.25388 * 16 15 14 23 23 C 1.46812 * 121.33555 * 8.63383 * 13 11 10 24 24 C 1.36126 * 109.12676 * 179.81623 * 10 9 7 25 25 C 1.41701 * 107.74851 * 0.34266 * 24 10 9 26 26 C 1.40022 * 133.35467 * 179.97438 * 25 24 10 27 27 C 1.36576 * 119.83391 * 179.68243 * 26 25 24 28 28 C 1.38854 * 120.59852 * 359.97127 * 27 26 25 29 29 C 1.37842 * 120.63512 * 0.03261 * 28 27 26 30 30 C 1.37840 * 125.61674 * 320.05422 * 9 7 2 31 31 H 0.97003 * 120.00141 * 5.03901 * 1 2 3 32 32 H 1.08996 * 109.73761 * 235.34296 * 14 13 11 33 33 H 1.09000 * 109.73548 * 356.04665 * 14 13 11 34 34 H 1.08997 * 109.21753 * 167.78940 * 15 14 13 35 35 H 1.09006 * 109.21646 * 287.11718 * 15 14 13 36 36 H 0.97001 * 119.99833 * 179.97438 * 20 19 18 37 37 H 0.97004 * 120.00008 * 359.96712 * 20 19 18 38 38 H 1.07996 * 120.98089 * 179.97438 * 21 19 18 39 39 H 1.08991 * 109.47332 * 344.15106 * 23 13 11 40 40 H 1.09007 * 109.46315 * 104.14275 * 23 13 11 41 41 H 1.07995 * 126.12706 * 180.24964 * 24 10 9 42 42 H 1.07997 * 120.08206 * 359.70023 * 26 25 24 43 43 H 1.07992 * 119.70289 * 180.02562 * 27 26 25 44 44 H 1.08004 * 119.68353 * 180.02562 * 28 27 26 45 45 H 1.08006 * 120.09402 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.3896 2.1072 -1.3948 5 1 1.5016 2.6200 0.8027 6 1 3.5937 1.4121 0.5919 7 6 2.0086 -1.2039 -0.0005 8 1 3.0543 -1.2235 -0.2698 9 7 1.3675 -2.3645 0.3401 10 6 1.5405 -3.5899 -0.2750 11 6 2.4448 -3.8575 -1.4012 12 8 3.4410 -3.1766 -1.5564 13 7 2.1709 -4.8573 -2.2626 14 6 3.1460 -5.2783 -3.2822 15 6 3.5636 -6.7157 -2.9743 16 6 2.3579 -7.5762 -2.7051 17 7 2.4924 -8.8908 -2.8132 18 7 1.5285 -9.7056 -2.5965 19 6 0.3201 -9.2897 -2.2456 20 7 -0.6987 -10.2075 -2.0144 21 6 0.0805 -7.9236 -2.1100 22 6 1.1320 -7.0496 -2.3514 23 6 0.8907 -5.5746 -2.2177 24 6 0.7432 -4.5107 0.3329 25 6 0.0313 -3.8511 1.3654 26 6 -0.9144 -4.2782 2.3056 27 6 -1.4315 -3.3872 3.2022 28 6 -1.0277 -2.0588 3.1916 29 6 -0.0982 -1.6145 2.2757 30 6 0.4427 -2.5033 1.3527 31 1 -0.4850 0.8368 -0.0738 32 1 2.6886 -5.2314 -4.2704 33 1 4.0186 -4.6261 -3.2484 34 1 4.1103 -7.1207 -3.8258 35 1 4.2113 -6.7212 -2.0976 36 1 -1.5813 -9.8978 -1.7574 37 1 -0.5267 -11.1573 -2.1102 38 1 -0.8942 -7.5556 -1.8257 39 1 0.3942 -5.3727 -1.2687 40 1 0.2568 -5.2379 -3.0382 41 1 0.6658 -5.5562 0.0737 42 1 -1.2338 -5.3098 2.3218 43 1 -2.1604 -3.7191 3.9266 44 1 -1.4459 -1.3669 3.9077 45 1 0.2094 -0.5791 2.2750 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075129072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:44 Heat of formation + Delta-G solvation = 108.970476 kcal Electronic energy + Delta-G solvation = -32453.626692 eV Core-core repulsion = 28244.591611 eV Total energy + Delta-G solvation = -4209.035081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.144 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.36238 -40.56669 -38.96348 -36.71457 -35.85661 -35.42818 -33.82174 -32.92705 -32.42085 -30.78024 -29.43595 -29.04561 -27.98002 -26.83916 -25.06300 -24.64089 -23.25558 -22.88342 -21.42625 -20.72361 -20.09538 -19.21255 -18.26416 -17.75840 -17.20860 -16.32047 -16.24649 -15.84846 -15.62967 -15.38178 -15.18401 -15.03411 -14.78729 -14.40532 -14.05459 -13.84672 -13.62695 -13.39843 -12.97186 -12.95768 -12.91383 -12.51035 -12.45546 -12.29416 -11.87424 -11.85528 -11.50189 -11.40362 -11.20767 -11.16961 -10.86301 -10.78702 -10.59465 -10.26286 -9.89974 -9.75737 -9.62573 -9.34263 -9.17841 -8.69645 -8.45975 -8.29631 -7.21317 -6.88980 -6.66747 -4.50788 0.78158 1.12385 1.77109 2.70663 2.95223 2.99461 3.02818 3.04174 3.10380 3.19978 3.57735 3.77572 4.05726 4.18861 4.40534 4.50504 4.57732 4.62088 4.80412 4.89722 5.01953 5.10596 5.18712 5.35182 5.38856 5.56936 5.58228 5.75637 5.75846 5.83224 5.90284 5.95668 6.00176 6.07122 6.19010 6.23207 6.47866 6.55493 6.68110 6.82578 6.92731 6.94463 7.02751 7.11694 7.30976 7.42056 7.51730 7.60690 7.65148 7.88770 8.02797 8.35027 8.61444 8.81788 8.84570 9.24235 10.13992 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003473 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.795537 B = 8061.101466 C =10058.460159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.053 3.947 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.343 4.343 8 H 0.122 0.878 9 N -0.225 5.225 10 C -0.019 4.019 11 C 0.602 3.398 12 O -0.529 6.529 13 N -0.613 5.613 14 C 0.117 3.883 15 C -0.073 4.073 16 C 0.032 3.968 17 N -0.203 5.203 18 N -0.309 5.309 19 C 0.337 3.663 20 N -0.843 5.843 21 C -0.181 4.181 22 C -0.040 4.040 23 C 0.110 3.890 24 C -0.228 4.228 25 C -0.117 4.117 26 C -0.096 4.096 27 C -0.151 4.151 28 C -0.155 4.155 29 C -0.046 4.046 30 C 0.085 3.915 31 H 0.283 0.717 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.407 0.593 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -11.483 -3.487 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.160 4.160 3 Si 0.755 3.245 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.472 4.472 8 H 0.139 0.861 9 N 0.116 4.884 10 C -0.137 4.137 11 C 0.394 3.606 12 O -0.405 6.405 13 N -0.348 5.348 14 C -0.007 4.007 15 C -0.113 4.113 16 C -0.116 4.116 17 N -0.046 5.046 18 N -0.161 5.161 19 C 0.096 3.904 20 N -0.389 5.389 21 C -0.215 4.215 22 C -0.051 4.051 23 C -0.013 4.013 24 C -0.255 4.255 25 C -0.122 4.122 26 C -0.115 4.115 27 C -0.170 4.170 28 C -0.176 4.176 29 C -0.065 4.065 30 C -0.030 4.030 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.240 0.760 37 H 0.236 0.764 38 H 0.167 0.833 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.054 -11.864 -3.968 12.678 hybrid contribution -1.271 1.582 0.198 2.039 sum -3.325 -10.283 -3.770 11.445 Atomic orbital electron populations 1.69963 1.06505 1.29566 1.38854 1.25740 0.95499 1.00857 0.93953 0.85819 0.80070 0.79441 0.79156 1.19479 1.19907 1.18296 1.20154 0.96667 0.82008 1.48372 0.86097 1.39951 1.25697 1.05480 1.17290 1.19557 1.05419 0.89202 0.99557 1.17162 0.84509 0.78569 0.80374 1.90745 1.28717 1.47104 1.73898 1.47578 1.16889 1.36015 1.34276 1.21554 0.94251 0.93974 0.90880 1.20579 0.93779 0.93114 1.03827 1.22114 0.95469 0.92815 1.01227 1.72803 1.21481 1.01819 1.08467 1.72836 0.96756 1.28977 1.17530 1.19934 0.90166 0.88659 0.91661 1.41989 1.10866 1.08120 1.77888 1.21612 1.01364 0.91660 1.06869 1.20657 0.92988 0.97718 0.93756 1.21370 0.87089 0.85170 1.07680 1.20325 1.04330 0.97570 1.03259 1.17923 1.01351 0.93280 0.99618 1.19996 0.97751 0.98047 0.95714 1.20276 1.02313 0.93942 1.00486 1.20540 1.00580 0.95677 1.00811 1.20105 0.95637 0.98022 0.92760 1.18139 0.98064 0.93956 0.92798 0.90691 0.90914 0.87674 0.88613 0.89335 0.75995 0.76375 0.83257 0.83192 0.89525 0.84827 0.87951 0.87967 0.87682 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.74 11.00 55.50 0.61 -20.13 16 2 C 0.05 1.30 4.46 -17.47 -0.08 1.22 16 3 Si 0.93 19.04 29.59 -169.99 -5.03 14.01 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.34 -9.01 9.09 -15.01 -0.14 -9.15 16 8 H 0.12 3.26 6.83 -52.49 -0.36 2.90 16 9 N -0.22 -5.74 2.82 -56.08 -0.16 -5.90 16 10 C -0.02 -0.43 6.40 -82.25 -0.53 -0.96 16 11 C 0.60 12.74 7.48 -12.76 -0.10 12.65 16 12 O -0.53 -12.57 14.87 5.22 0.08 -12.49 16 13 N -0.61 -10.02 2.95 -176.17 -0.52 -10.54 16 14 C 0.12 1.55 6.43 -3.74 -0.02 1.53 16 15 C -0.07 -0.90 6.12 -28.05 -0.17 -1.07 16 16 C 0.03 0.44 6.71 -82.42 -0.55 -0.11 16 17 N -0.20 -3.04 11.36 33.55 0.38 -2.66 16 18 N -0.31 -4.39 11.53 31.22 0.36 -4.03 16 19 C 0.34 3.88 7.87 -154.77 -1.22 2.66 16 20 N -0.84 -6.21 9.08 31.21 0.28 -5.93 16 21 C -0.18 -2.01 9.70 -38.94 -0.38 -2.38 16 22 C -0.04 -0.51 5.81 -104.78 -0.61 -1.12 16 23 C 0.11 1.52 5.76 -5.33 -0.03 1.49 16 24 C -0.23 -4.64 8.65 -39.02 -0.34 -4.98 16 25 C -0.12 -2.58 6.16 -106.89 -0.66 -3.24 16 26 C -0.10 -1.83 10.06 -39.51 -0.40 -2.23 16 27 C -0.15 -2.78 9.97 -39.95 -0.40 -3.18 16 28 C -0.16 -3.08 10.02 -39.50 -0.40 -3.48 16 29 C -0.05 -1.06 8.59 -39.41 -0.34 -1.40 16 30 C 0.08 2.07 6.07 -83.83 -0.51 1.56 16 31 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 1.47 7.08 -51.93 -0.37 1.11 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.41 1.92 8.84 -40.82 -0.36 1.56 16 37 H 0.41 2.54 8.96 -40.82 -0.37 2.18 16 38 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.15 2.24 3.02 -51.93 -0.16 2.08 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.13 2.28 5.96 -52.49 -0.31 1.97 16 42 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.10 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.11 1.80 8.06 -52.48 -0.42 1.37 16 45 H 0.11 2.70 6.54 -52.48 -0.34 2.35 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -31.92 370.22 -10.05 -41.97 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.78 Total: 12.30 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -6.86 Total: -12.18 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.96 Total: -49.18 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.92 -10.05 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075129072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.941 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds