Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99580 * 2 1 4 4 H 1.08997 * 109.47786 * 29.99724 * 3 2 1 5 5 C 1.53007 * 109.46700 * 269.99450 * 3 2 1 6 6 C 1.50708 * 109.47292 * 150.00170 * 3 2 1 7 7 O 1.21300 * 119.99545 * 4.99220 * 6 3 2 8 8 N 1.34771 * 120.00113 * 184.99454 * 6 3 2 9 9 C 1.40140 * 119.99988 * 184.47291 * 8 6 3 10 10 C 1.38641 * 120.10137 * 325.34146 * 9 8 6 11 11 C 1.38255 * 120.01156 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.89695 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.46992 * 90.00051 * 12 11 10 14 14 F 1.39904 * 109.47141 * 209.99781 * 12 11 10 15 15 F 1.39899 * 109.47316 * 330.00010 * 12 11 10 16 16 C 1.38302 * 120.20781 * 359.74006 * 11 10 9 17 17 C 1.38204 * 120.19832 * 0.50996 * 16 11 10 18 18 C 1.38782 * 119.98616 * 359.49297 * 17 16 11 19 19 S 1.76200 * 120.10243 * 180.27017 * 18 17 16 20 20 C 1.81400 * 103.00163 * 0.02562 * 19 18 17 21 21 C 1.50694 * 109.47199 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00354 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00164 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99608 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00544 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46701 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47127 * 120.00038 * 25 23 21 28 28 H 1.48499 * 109.47143 * 240.00768 * 25 23 21 29 29 H 1.09004 * 109.47004 * 300.00049 * 1 2 3 30 30 H 1.08994 * 109.47168 * 60.00421 * 1 2 3 31 31 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46896 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47225 * 300.00618 * 5 3 2 34 34 H 1.08999 * 109.46751 * 60.00727 * 5 3 2 35 35 H 0.96997 * 120.00122 * 4.47747 * 8 6 3 36 36 H 1.08004 * 119.99868 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.89966 * 180.25463 * 16 11 10 38 38 H 1.07994 * 120.00389 * 179.76292 * 17 16 11 39 39 H 1.09000 * 109.46670 * 299.99837 * 20 19 18 40 40 H 1.09001 * 109.46760 * 59.99486 * 20 19 18 41 41 H 0.97002 * 119.99374 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4426 6 6 3.3386 1.2641 0.7104 7 8 3.7897 0.2045 1.0915 8 7 4.0253 2.4042 0.9223 9 6 5.3021 2.3564 1.4981 10 6 5.5959 1.4017 2.4595 11 6 6.8559 1.3566 3.0268 12 6 7.1724 0.3182 4.0720 13 9 7.6661 -0.8337 3.4504 14 9 8.1354 0.8217 4.9531 15 9 6.0095 0.0025 4.7829 16 6 7.8283 2.2585 2.6346 17 6 7.5432 3.2171 1.6807 18 6 6.2811 3.2697 1.1059 19 16 5.9165 4.4861 -0.1157 20 6 7.4782 5.3971 -0.2634 21 6 7.3267 6.4907 -1.2889 22 1 6.3850 6.6248 -1.8004 23 6 8.3899 7.3210 -1.5736 24 7 9.5366 7.1582 -0.9503 25 14 8.2020 8.6773 -2.8443 26 1 6.8239 8.6503 -3.3968 27 1 8.4526 9.9935 -2.2042 28 1 9.1799 8.4663 -3.9418 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.6613 2.7669 -1.4426 33 1 2.8828 1.0773 -1.9564 34 1 1.2568 1.8013 -1.9564 35 1 3.6359 3.2578 0.6762 36 1 4.8402 0.6936 2.7660 37 1 8.8122 2.2161 3.0781 38 1 8.3038 3.9222 1.3796 39 1 7.7355 5.8356 0.7007 40 1 8.2689 4.7144 -0.5747 41 1 10.2848 7.7421 -1.1509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075134429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -210.487720 kcal Electronic energy + Delta-G solvation = -30099.349652 eV Core-core repulsion = 25269.630438 eV Total energy + Delta-G solvation = -4829.719214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.05076 -47.57634 -47.50141 -40.73839 -38.95479 -37.64507 -34.99076 -33.41040 -32.15594 -31.82394 -29.52752 -28.79444 -27.10088 -26.11837 -24.78798 -23.57008 -22.55308 -21.95090 -20.50424 -18.84381 -18.37566 -18.29249 -17.59935 -17.34251 -17.12851 -16.44968 -16.05917 -15.73304 -15.34200 -15.12811 -14.89742 -14.49550 -14.44885 -14.13334 -14.03152 -13.96579 -13.81285 -13.68087 -13.63939 -13.47120 -13.32271 -12.92789 -12.70381 -12.66270 -12.51413 -12.44787 -12.10756 -12.00141 -11.51931 -11.41360 -11.07069 -10.88767 -10.57938 -10.32856 -10.20857 -9.82917 -9.73217 -9.58733 -9.37217 -8.78986 -8.39497 -6.92579 -6.40291 -4.47260 0.92189 1.29476 2.04246 2.37621 2.58366 2.81341 3.12673 3.20945 3.23206 3.33710 3.52306 3.66872 3.86410 4.15043 4.18073 4.38968 4.54765 4.56874 4.68890 4.93704 4.97853 4.98818 5.05343 5.09145 5.31541 5.37929 5.39184 5.40748 5.45915 5.80765 5.88734 5.96172 6.16602 6.27495 6.34136 6.69293 6.75687 6.79013 6.84315 7.24465 7.51374 7.72412 7.96229 8.53760 9.18098 10.70680 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.003512 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.338810 B = 7969.742196 C =11609.722932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.074 3.926 4 H 0.090 0.910 5 C -0.173 4.173 6 C 0.514 3.486 7 O -0.501 6.501 8 N -0.659 5.659 9 C 0.144 3.856 10 C -0.057 4.057 11 C -0.194 4.194 12 C 0.514 3.486 13 F -0.178 7.178 14 F -0.179 7.179 15 F -0.179 7.179 16 C -0.060 4.060 17 C -0.121 4.121 18 C -0.063 4.063 19 S -0.141 6.141 20 C 0.071 3.929 21 C -0.523 4.523 22 H 0.070 0.930 23 C 0.070 3.930 24 N -0.886 5.886 25 Si 0.909 3.091 26 H -0.269 1.269 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.416 0.584 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.148 0.852 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.993 -9.933 5.491 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.013 3.987 4 H 0.108 0.892 5 C -0.231 4.231 6 C 0.301 3.699 7 O -0.374 6.374 8 N -0.307 5.307 9 C 0.043 3.957 10 C -0.079 4.079 11 C -0.199 4.199 12 C 0.460 3.540 13 F -0.159 7.159 14 F -0.161 7.161 15 F -0.161 7.161 16 C -0.081 4.081 17 C -0.146 4.146 18 C -0.179 4.179 19 S 0.109 5.891 20 C -0.076 4.076 21 C -0.562 4.562 22 H 0.088 0.912 23 C -0.135 4.135 24 N -0.523 5.523 25 Si 0.736 3.264 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.253 0.747 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.468 -10.522 5.035 17.817 hybrid contribution 0.934 0.991 0.099 1.366 sum -12.533 -9.531 5.133 16.561 Atomic orbital electron populations 1.22896 0.80459 1.03319 1.00139 1.88056 1.19763 1.24926 1.94950 1.21872 0.92684 0.87084 0.97102 0.89219 1.22266 1.03661 1.02794 0.94376 1.20573 0.86521 0.83602 0.79241 1.90726 1.68472 1.29640 1.48593 1.43334 1.15624 1.10109 1.61611 1.16867 0.84739 0.98149 0.95932 1.20801 0.96027 0.98054 0.93012 1.19649 0.97274 1.00382 1.02632 1.18214 0.74048 0.80918 0.80830 1.93218 1.87947 1.52283 1.82478 1.93174 1.64692 1.87226 1.70974 1.93172 1.49184 1.93644 1.80076 1.20813 0.98474 0.92925 0.95892 1.21220 0.95825 1.00011 0.97517 1.22219 0.95260 1.00193 1.00276 1.85197 1.28806 1.31561 1.43566 1.21496 0.87696 0.96730 1.01663 1.20593 0.99119 1.14090 1.22422 0.91219 1.24949 0.94642 0.97529 0.96408 1.69942 1.02334 1.38694 1.41354 0.86254 0.78580 0.80929 0.80674 1.19367 1.20565 1.20552 0.93771 0.93664 0.89082 0.90194 0.90751 0.90955 0.74685 0.83169 0.84619 0.83411 0.93379 0.93364 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.21 9.89 -55.09 -0.54 -4.76 16 3 C 0.07 0.76 3.13 -27.88 -0.09 0.67 16 4 H 0.09 0.65 7.79 -51.93 -0.40 0.24 16 5 C -0.17 -1.56 9.48 37.16 0.35 -1.20 16 6 C 0.51 7.07 7.03 -10.98 -0.08 6.99 16 7 O -0.50 -8.76 13.93 -14.32 -0.20 -8.96 16 8 N -0.66 -8.77 4.98 -9.71 -0.05 -8.82 16 9 C 0.14 2.27 6.32 -83.43 -0.53 1.75 16 10 C -0.06 -0.90 8.05 -39.43 -0.32 -1.22 16 11 C -0.19 -2.93 5.45 -104.59 -0.57 -3.50 16 12 C 0.51 7.33 3.36 36.00 0.12 7.45 16 13 F -0.18 -2.64 17.30 2.25 0.04 -2.60 16 14 F -0.18 -2.44 16.46 2.25 0.04 -2.40 16 15 F -0.18 -2.57 16.45 2.25 0.04 -2.53 16 16 C -0.06 -0.89 9.39 -39.57 -0.37 -1.26 16 17 C -0.12 -2.00 9.36 -39.39 -0.37 -2.37 16 18 C -0.06 -1.07 6.12 -38.90 -0.24 -1.31 16 19 S -0.14 -2.60 20.72 -107.50 -2.23 -4.83 16 20 C 0.07 1.62 4.09 36.00 0.15 1.76 16 21 C -0.52 -13.23 9.13 -34.44 -0.31 -13.55 16 22 H 0.07 1.74 7.71 -52.49 -0.40 1.34 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -23.82 13.29 55.43 0.74 -23.08 16 25 Si 0.91 19.77 29.54 -169.99 -5.02 14.75 16 26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.42 4.65 7.91 -40.82 -0.32 4.32 16 36 H 0.15 2.43 5.74 -52.48 -0.30 2.13 16 37 H 0.14 1.72 7.60 -52.49 -0.40 1.32 16 38 H 0.15 2.55 5.88 -52.49 -0.31 2.24 16 39 H 0.05 1.14 7.75 -51.92 -0.40 0.74 16 40 H 0.05 1.16 7.75 -51.92 -0.40 0.76 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -29.51 375.68 -7.37 -36.87 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.58 Total: 3.47 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -1.26 Total: -2.78 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.69 Total: -31.90 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.74 Total: -13.72 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.11 Total: -7.53 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.23 Total: -4.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.51 -7.37 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075134429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.614 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds