Wall clock time and date at job start Tue Mar 31 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99580 * 2 1 4 4 H 1.08997 * 109.47786 * 29.99724 * 3 2 1 5 5 C 1.53007 * 109.46700 * 269.99450 * 3 2 1 6 6 C 1.50708 * 109.47292 * 150.00170 * 3 2 1 7 7 O 1.21300 * 119.99545 * 4.99220 * 6 3 2 8 8 N 1.34771 * 120.00113 * 184.99454 * 6 3 2 9 9 C 1.40140 * 119.99988 * 184.47291 * 8 6 3 10 10 C 1.38641 * 120.10137 * 325.34146 * 9 8 6 11 11 C 1.38255 * 120.01156 * 180.02562 * 10 9 8 12 12 C 1.50697 * 119.89695 * 179.97438 * 11 10 9 13 13 F 1.39897 * 109.46992 * 90.00051 * 12 11 10 14 14 F 1.39904 * 109.47141 * 209.99781 * 12 11 10 15 15 F 1.39899 * 109.47316 * 330.00010 * 12 11 10 16 16 C 1.38302 * 120.20781 * 359.74006 * 11 10 9 17 17 C 1.38204 * 120.19832 * 0.50996 * 16 11 10 18 18 C 1.38782 * 119.98616 * 359.49297 * 17 16 11 19 19 S 1.76200 * 120.10243 * 180.27017 * 18 17 16 20 20 C 1.81400 * 103.00163 * 0.02562 * 19 18 17 21 21 C 1.50694 * 109.47199 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00354 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00164 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99608 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00544 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46701 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47127 * 120.00038 * 25 23 21 28 28 H 1.48499 * 109.47143 * 240.00768 * 25 23 21 29 29 H 1.09004 * 109.47004 * 300.00049 * 1 2 3 30 30 H 1.08994 * 109.47168 * 60.00421 * 1 2 3 31 31 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46896 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47225 * 300.00618 * 5 3 2 34 34 H 1.08999 * 109.46751 * 60.00727 * 5 3 2 35 35 H 0.96997 * 120.00122 * 4.47747 * 8 6 3 36 36 H 1.08004 * 119.99868 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.89966 * 180.25463 * 16 11 10 38 38 H 1.07994 * 120.00389 * 179.76292 * 17 16 11 39 39 H 1.09000 * 109.46670 * 299.99837 * 20 19 18 40 40 H 1.09001 * 109.46760 * 59.99486 * 20 19 18 41 41 H 0.97002 * 119.99374 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7713 -1.4426 6 6 3.3386 1.2641 0.7104 7 8 3.7897 0.2045 1.0915 8 7 4.0253 2.4042 0.9223 9 6 5.3021 2.3564 1.4981 10 6 5.5959 1.4017 2.4595 11 6 6.8559 1.3566 3.0268 12 6 7.1724 0.3182 4.0720 13 9 7.6661 -0.8337 3.4504 14 9 8.1354 0.8217 4.9531 15 9 6.0095 0.0025 4.7829 16 6 7.8283 2.2585 2.6346 17 6 7.5432 3.2171 1.6807 18 6 6.2811 3.2697 1.1059 19 16 5.9165 4.4861 -0.1157 20 6 7.4782 5.3971 -0.2634 21 6 7.3267 6.4907 -1.2889 22 1 6.3850 6.6248 -1.8004 23 6 8.3899 7.3210 -1.5736 24 7 9.5366 7.1582 -0.9503 25 14 8.2020 8.6773 -2.8443 26 1 6.8239 8.6503 -3.3968 27 1 8.4526 9.9935 -2.2042 28 1 9.1799 8.4663 -3.9418 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.6613 2.7669 -1.4426 33 1 2.8828 1.0773 -1.9564 34 1 1.2568 1.8013 -1.9564 35 1 3.6359 3.2578 0.6762 36 1 4.8402 0.6936 2.7660 37 1 8.8122 2.2161 3.0781 38 1 8.3038 3.9222 1.3796 39 1 7.7355 5.8356 0.7007 40 1 8.2689 4.7144 -0.5747 41 1 10.2848 7.7421 -1.1509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075134429.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:25 Heat of formation + Delta-G solvation = -225.912742 kcal Electronic energy + Delta-G solvation = -30100.018531 eV Core-core repulsion = 25269.630438 eV Total energy + Delta-G solvation = -4830.388093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.090 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.21863 -48.72674 -48.68052 -41.87293 -40.06458 -38.56706 -36.19022 -35.32835 -33.21245 -32.94325 -30.79369 -30.54629 -27.69696 -27.35615 -25.86190 -25.21523 -23.83693 -23.14929 -21.58309 -20.04603 -19.54612 -19.45281 -18.94047 -18.57917 -18.16926 -18.02470 -17.06614 -16.80610 -16.74707 -16.31320 -15.95970 -15.71179 -15.61771 -15.47743 -15.22473 -15.14482 -15.05894 -14.84525 -14.81263 -14.77653 -14.39149 -14.31801 -14.15328 -14.05603 -13.65561 -13.43632 -13.15531 -12.90083 -12.78847 -12.76909 -12.56879 -12.14349 -12.06861 -11.68477 -11.61828 -11.13388 -11.07583 -11.00151 -10.69704 -10.59800 -9.64261 -8.38321 -8.35011 -6.48683 -0.36996 0.02182 0.58033 1.29940 1.42171 1.44263 1.48822 1.56011 1.67436 1.70869 2.25722 2.36403 2.64058 2.88757 3.01092 3.01731 3.36435 3.45413 3.62963 3.86620 3.89451 3.96184 4.11717 4.18568 4.47709 4.53855 4.57281 4.65722 4.69174 4.78778 4.86892 4.88545 4.90047 4.92107 4.99649 5.11254 5.19663 5.54826 5.56963 5.81769 5.97677 6.25443 6.58783 6.89617 7.20748 8.76810 Molecular weight = 363.09amu Principal moments of inertia in cm(-1) A = 0.007135 B = 0.003512 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3923.338810 B = 7969.742196 C =11609.722932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.393 6.393 3 C 0.078 3.922 4 H 0.126 0.874 5 C -0.170 4.170 6 C 0.511 3.489 7 O -0.543 6.543 8 N -0.652 5.652 9 C 0.147 3.853 10 C -0.063 4.063 11 C -0.190 4.190 12 C 0.520 3.480 13 F -0.180 7.180 14 F -0.173 7.173 15 F -0.178 7.178 16 C -0.056 4.056 17 C -0.128 4.128 18 C -0.081 4.081 19 S -0.110 6.110 20 C 0.069 3.931 21 C -0.539 4.539 22 H 0.071 0.929 23 C 0.020 3.980 24 N -0.920 5.920 25 Si 0.973 3.027 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.277 1.277 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.426 0.574 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.136 0.864 39 H 0.031 0.969 40 H 0.027 0.973 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.771 -9.656 5.198 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.312 6.312 3 C 0.018 3.982 4 H 0.144 0.856 5 C -0.227 4.227 6 C 0.300 3.700 7 O -0.419 6.419 8 N -0.300 5.300 9 C 0.046 3.954 10 C -0.085 4.085 11 C -0.195 4.195 12 C 0.466 3.534 13 F -0.161 7.161 14 F -0.154 7.154 15 F -0.160 7.160 16 C -0.076 4.076 17 C -0.152 4.152 18 C -0.197 4.197 19 S 0.139 5.861 20 C -0.078 4.078 21 C -0.578 4.578 22 H 0.089 0.911 23 C -0.182 4.182 24 N -0.558 5.558 25 Si 0.797 3.203 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.203 1.203 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.266 0.734 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.154 0.846 39 H 0.049 0.951 40 H 0.045 0.955 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.276 -10.243 4.746 18.995 hybrid contribution 1.438 0.775 0.282 1.658 sum -13.838 -9.468 5.028 17.505 Atomic orbital electron populations 1.23129 0.78293 1.04323 1.01702 1.88015 1.22201 1.25834 1.95150 1.21975 0.91079 0.87609 0.97583 0.85611 1.22269 1.04650 1.02330 0.93480 1.21382 0.87485 0.82752 0.78391 1.90701 1.69708 1.31069 1.50394 1.43363 1.14727 1.10852 1.61076 1.16922 0.85500 0.97387 0.95597 1.20866 0.96364 0.98038 0.93248 1.19796 0.97033 1.00285 1.02399 1.18024 0.74167 0.80543 0.80649 1.93217 1.87973 1.52367 1.82586 1.93190 1.64397 1.87113 1.70683 1.93178 1.49198 1.93601 1.79984 1.20982 0.99434 0.92031 0.95164 1.21201 0.95516 1.00382 0.98144 1.22218 0.96023 1.00666 1.00768 1.84780 1.25130 1.31551 1.44661 1.21169 0.89965 0.96515 1.00160 1.20945 0.99222 1.14769 1.22823 0.91099 1.25831 0.94333 0.99793 0.98241 1.70047 1.03115 1.39816 1.42858 0.85265 0.78840 0.78027 0.78176 1.18423 1.20120 1.20301 0.92455 0.91758 0.88538 0.89583 0.92888 0.88422 0.73415 0.83397 0.82356 0.84584 0.95117 0.95511 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.82 113.37 1.23 1.48 16 2 O -0.39 -8.62 9.89 -129.99 -1.29 -9.91 16 3 C 0.08 1.45 3.13 29.85 0.09 1.54 16 4 H 0.13 1.39 7.79 -2.39 -0.02 1.37 16 5 C -0.17 -2.69 9.48 71.98 0.68 -2.01 16 6 C 0.51 13.58 7.03 87.66 0.62 14.20 16 7 O -0.54 -18.93 13.93 15.89 0.22 -18.71 16 8 N -0.65 -16.68 4.98 -303.00 -1.51 -18.19 16 9 C 0.15 4.58 6.32 38.22 0.24 4.82 16 10 C -0.06 -1.96 8.05 22.37 0.18 -1.78 16 11 C -0.19 -5.58 5.45 -19.85 -0.11 -5.69 16 12 C 0.52 14.22 3.36 71.23 0.24 14.46 16 13 F -0.18 -5.15 17.30 44.97 0.78 -4.37 16 14 F -0.17 -4.41 16.46 44.97 0.74 -3.67 16 15 F -0.18 -4.90 16.45 44.97 0.74 -4.16 16 16 C -0.06 -1.61 9.39 22.28 0.21 -1.40 16 17 C -0.13 -4.26 9.36 22.39 0.21 -4.05 16 18 C -0.08 -2.74 6.12 22.71 0.14 -2.60 16 19 S -0.11 -4.03 20.72 -56.49 -1.17 -5.20 16 20 C 0.07 3.25 4.09 71.23 0.29 3.54 16 21 C -0.54 -27.50 9.13 25.60 0.23 -27.27 16 22 H 0.07 3.52 7.71 -2.91 -0.02 3.50 16 23 C 0.02 1.03 5.46 84.65 0.46 1.49 16 24 N -0.92 -50.33 13.29 21.45 0.28 -50.04 16 25 Si 0.97 40.28 29.54 68.60 2.03 42.30 16 26 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 27 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.06 0.53 7.87 -2.39 -0.02 0.51 16 31 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.06 7.87 -2.39 -0.02 1.04 16 35 H 0.43 8.85 7.91 -92.71 -0.73 8.12 16 36 H 0.15 4.75 5.74 -2.91 -0.02 4.73 16 37 H 0.16 3.81 7.60 -2.91 -0.02 3.78 16 38 H 0.14 4.88 5.88 -2.91 -0.02 4.86 16 39 H 0.03 1.51 7.75 -2.39 -0.02 1.50 16 40 H 0.03 1.34 7.75 -2.39 -0.02 1.32 16 41 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.08 375.68 5.91 -58.17 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.37 Total: 17.04 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.72 Total: -3.26 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.23 Total: -68.23 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.06 Total: -28.62 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 2.26 Total: -12.20 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: -4.03 SS G_CDS: -1.17 Total: -5.20 kcal Total: -64.08 5.91 -58.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075134429.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.745 kcal (2) G-P(sol) polarization free energy of solvation -64.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds