Wall clock time and date at job start Tue Mar 31 2020 05:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47267 * 48.49956 * 3 2 1 5 5 C 1.34773 * 120.00529 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99645 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00455 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47419 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47397 * 179.97438 * 8 7 5 10 10 H 1.09007 * 109.47214 * 305.00724 * 9 8 7 11 11 C 1.52997 * 109.47254 * 185.00373 * 9 8 7 12 12 C 1.50707 * 109.46950 * 175.28178 * 11 9 8 13 13 C 1.38240 * 119.98528 * 275.26701 * 12 11 9 14 14 C 1.38217 * 120.00708 * 179.73114 * 13 12 11 15 15 C 1.38345 * 119.99104 * 0.54482 * 14 13 12 16 16 Cl 1.73604 * 120.01628 * 179.70956 * 15 14 13 17 17 C 1.38351 * 119.97335 * 359.72435 * 15 14 13 18 18 C 1.38215 * 119.98579 * 0.02562 * 17 15 14 19 19 C 1.50703 * 109.46893 * 65.00169 * 9 8 7 20 20 O 1.21291 * 120.00078 * 37.74945 * 19 9 8 21 21 N 1.34775 * 120.00216 * 217.74760 * 19 9 8 22 22 C 1.37092 * 120.00385 * 185.01764 * 21 19 9 23 23 H 1.08001 * 119.99568 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00279 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00256 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00104 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47148 * 90.00011 * 26 24 22 28 28 H 1.48496 * 109.47262 * 209.99824 * 26 24 22 29 29 H 1.48496 * 109.47004 * 330.00419 * 26 24 22 30 30 H 1.08999 * 109.47546 * 288.50157 * 3 2 1 31 31 H 1.09000 * 109.47411 * 168.49713 * 3 2 1 32 32 H 0.96999 * 119.99598 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47104 * 59.99954 * 7 5 4 34 34 H 1.09001 * 109.47554 * 300.00649 * 7 5 4 35 35 H 1.09000 * 109.46753 * 60.00801 * 8 7 5 36 36 H 1.08991 * 109.47365 * 300.00162 * 8 7 5 37 37 H 1.08998 * 109.47314 * 295.28057 * 11 9 8 38 38 H 1.09001 * 109.47457 * 55.28326 * 11 9 8 39 39 H 1.07999 * 119.99288 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.99774 * 180.27147 * 14 13 12 41 41 H 1.08000 * 120.00936 * 180.02562 * 17 15 14 42 42 H 1.08007 * 119.99459 * 179.97438 * 18 17 15 43 43 H 0.97005 * 120.00052 * 5.01371 * 21 19 9 44 44 H 0.96998 * 120.00074 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9144 -1.0345 5 6 4.4219 -1.0766 -1.2193 6 8 5.2097 -0.4654 -0.5289 7 6 4.9246 -2.0182 -2.2830 8 6 6.4546 -2.0165 -2.2840 9 6 6.9651 -2.9730 -3.3635 10 1 6.5315 -3.9611 -3.2080 11 6 8.4900 -3.0667 -3.2823 12 6 8.9832 -4.0952 -4.2673 13 6 9.0095 -5.4318 -3.9156 14 6 9.4566 -6.3761 -4.8205 15 6 9.8884 -5.9822 -6.0744 16 17 10.4571 -7.1668 -7.2089 17 6 9.8671 -4.6437 -6.4239 18 6 9.4149 -3.7009 -5.5200 19 6 6.5650 -2.4571 -4.7217 20 8 6.5812 -1.2653 -4.9467 21 7 6.1891 -3.3198 -5.6865 22 6 5.9244 -2.8613 -6.9511 23 1 6.0174 -1.8087 -7.1742 24 6 5.5364 -3.7507 -7.9456 25 7 5.4237 -5.0316 -7.6742 26 14 5.1750 -3.1258 -9.6685 27 1 6.4208 -3.1527 -10.4763 28 1 4.1530 -3.9944 -10.3059 29 1 4.6641 -1.7336 -9.5930 30 1 2.9715 -0.3253 0.9745 31 1 2.9709 1.0078 -0.2049 32 1 2.4666 -1.4034 -1.5864 33 1 4.5607 -1.6930 -3.2576 34 1 4.5621 -3.0255 -2.0775 35 1 6.8189 -2.3416 -1.3094 36 1 6.8167 -1.0093 -2.4898 37 1 8.9268 -2.0968 -3.5204 38 1 8.7830 -3.3594 -2.2741 39 1 8.6770 -5.7386 -2.9349 40 1 9.4729 -7.4208 -4.5471 41 1 10.2036 -4.3356 -7.4028 42 1 9.3986 -2.6559 -5.7925 43 1 6.1060 -4.2653 -5.4862 44 1 5.1525 -5.6524 -8.3684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075138007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:11 Heat of formation + Delta-G solvation = -45.534877 kcal Electronic energy + Delta-G solvation = -29477.862309 eV Core-core repulsion = 25227.401772 eV Total energy + Delta-G solvation = -4250.460537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.02261 -39.40311 -38.22319 -37.17272 -36.23610 -34.92651 -34.60952 -33.76125 -32.17210 -31.13679 -30.73082 -29.43859 -27.78307 -25.35283 -24.38311 -22.54735 -22.05919 -21.04477 -20.52037 -18.78332 -18.64444 -17.73762 -16.78894 -16.70186 -16.54327 -15.96635 -15.88499 -15.14628 -15.04848 -14.80017 -14.42089 -14.29948 -13.95633 -13.60011 -13.43419 -13.25366 -13.23496 -13.19591 -13.03566 -12.83331 -12.53998 -12.29653 -12.13004 -11.89818 -11.69715 -11.51665 -11.21492 -11.11761 -10.98149 -10.83767 -10.63508 -10.53315 -10.46475 -10.40766 -10.22576 -9.93806 -9.51824 -9.46435 -8.67886 -8.36320 -8.19080 -7.95646 -6.42400 -3.82787 1.46440 1.65139 1.96387 2.30455 2.42507 2.57742 3.14692 3.15647 3.25011 3.29317 3.50010 3.83363 3.98919 4.15209 4.65464 4.84402 4.94037 4.96128 5.04028 5.08382 5.17228 5.19753 5.29452 5.39655 5.54904 5.64528 5.67538 5.72920 5.79285 5.90118 5.97199 6.02389 6.05769 6.21686 6.24364 6.31601 6.48137 6.52063 6.59959 6.64782 6.90455 7.00351 7.14271 7.19699 7.53358 8.03967 8.04606 8.59654 9.16809 9.54572 10.05024 10.74155 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.009349 B = 0.002733 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.198752 B =10241.147530 C =12327.969026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.196 3.804 3 C 0.218 3.782 4 N -0.738 5.738 5 C 0.527 3.473 6 O -0.534 6.534 7 C -0.141 4.141 8 C -0.081 4.081 9 C -0.096 4.096 10 H 0.076 0.924 11 C -0.065 4.065 12 C -0.076 4.076 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.031 4.031 16 Cl -0.085 7.085 17 C -0.098 4.098 18 C -0.077 4.077 19 C 0.443 3.557 20 O -0.596 6.596 21 N -0.551 5.551 22 C -0.300 4.300 23 H 0.101 0.899 24 C 0.029 3.971 25 N -0.892 5.892 26 Si 0.921 3.079 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.408 0.592 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -1.352 11.508 12.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.123 4.123 3 C 0.092 3.908 4 N -0.394 5.394 5 C 0.316 3.684 6 O -0.409 6.409 7 C -0.181 4.181 8 C -0.120 4.120 9 C -0.118 4.118 10 H 0.094 0.906 11 C -0.103 4.103 12 C -0.076 4.076 13 C -0.125 4.125 14 C -0.131 4.131 15 C -0.058 4.058 16 Cl -0.057 7.057 17 C -0.117 4.117 18 C -0.096 4.096 19 C 0.229 3.771 20 O -0.482 6.482 21 N -0.186 5.186 22 C -0.430 4.430 23 H 0.118 0.882 24 C -0.174 4.174 25 N -0.533 5.533 26 Si 0.748 3.252 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.195 1.195 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.243 0.757 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.871 -0.383 11.616 11.971 hybrid contribution -0.341 -0.807 -1.431 1.677 sum 2.531 -1.190 10.185 10.562 Atomic orbital electron populations 1.81282 1.12765 1.07511 1.07155 1.29090 0.95103 0.93987 0.94144 1.18602 0.79786 0.97550 0.94912 1.45964 1.08250 1.46874 1.38272 1.20926 0.80770 0.82451 0.84295 1.90707 1.54960 1.47745 1.47495 1.21732 0.98788 0.98931 0.98606 1.21156 0.92130 1.01353 0.97347 1.21237 0.95501 0.99758 0.95303 0.90570 1.20512 0.94138 0.98097 0.97550 1.19920 0.98046 0.94342 0.95332 1.20875 1.00143 0.92122 0.99401 1.20876 1.00055 0.99970 0.92202 1.20821 1.03447 0.89997 0.91503 1.98340 1.87757 1.58053 1.61511 1.20958 0.99847 0.90904 0.99951 1.20997 0.96313 0.99801 0.92441 1.19713 0.84557 0.86973 0.85857 1.90525 1.59669 1.15832 1.82198 1.41928 1.58237 1.09421 1.08977 1.19626 1.42900 0.95357 0.85128 0.88160 1.25180 0.97323 0.94971 0.99878 1.69603 1.47149 1.01798 1.34731 0.86004 0.78238 0.78722 0.82232 1.20434 1.21006 1.19516 0.86865 0.86822 0.75675 0.87611 0.88842 0.91271 0.89772 0.90195 0.90471 0.85528 0.85586 0.85509 0.85304 0.77553 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.64 18.54 42.15 0.78 -3.86 16 2 C 0.20 1.62 15.55 -20.76 -0.32 1.30 16 3 C 0.22 1.42 6.15 -6.83 -0.04 1.38 16 4 N -0.74 -6.16 5.54 -63.16 -0.35 -6.51 16 5 C 0.53 6.10 7.83 -10.99 -0.09 6.01 16 6 O -0.53 -7.67 15.98 5.56 0.09 -7.58 16 7 C -0.14 -1.72 5.51 -27.89 -0.15 -1.88 16 8 C -0.08 -1.12 3.76 -26.73 -0.10 -1.22 16 9 C -0.10 -1.45 2.21 -91.77 -0.20 -1.65 16 10 H 0.08 1.05 8.06 -51.92 -0.42 0.63 16 11 C -0.07 -0.89 4.82 -27.88 -0.13 -1.02 16 12 C -0.08 -1.13 4.73 -104.62 -0.49 -1.63 16 13 C -0.11 -1.44 9.72 -39.59 -0.38 -1.82 16 14 C -0.11 -1.59 9.83 -39.55 -0.39 -1.97 16 15 C -0.03 -0.49 6.32 -39.50 -0.25 -0.74 16 16 Cl -0.09 -1.26 28.96 -51.86 -1.50 -2.76 16 17 C -0.10 -1.61 9.83 -39.55 -0.39 -2.00 16 18 C -0.08 -1.28 9.13 -39.59 -0.36 -1.64 16 19 C 0.44 9.06 4.74 -10.98 -0.05 9.01 16 20 O -0.60 -14.39 15.75 5.55 0.09 -14.31 16 21 N -0.55 -12.49 5.28 -10.96 -0.06 -12.55 16 22 C -0.30 -7.71 9.68 -14.94 -0.14 -7.85 16 23 H 0.10 2.74 7.17 -52.49 -0.38 2.37 16 24 C 0.03 0.74 5.50 -17.47 -0.10 0.64 16 25 N -0.89 -23.05 13.05 55.50 0.72 -22.32 16 26 Si 0.92 20.32 29.55 -169.99 -5.02 15.30 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.41 2.86 8.45 -40.82 -0.34 2.51 16 33 H 0.11 1.54 7.32 -51.93 -0.38 1.16 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 1.37 7.65 -51.93 -0.40 0.97 16 37 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 38 H 0.08 0.84 8.12 -51.93 -0.42 0.41 16 39 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.13 1.52 8.06 -52.48 -0.42 1.09 16 41 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 43 H 0.39 8.87 7.84 -40.82 -0.32 8.55 16 44 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -31.91 404.98 -8.34 -40.25 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.59 Total: 13.33 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.60 Total: -5.10 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 1.10 Total: -45.24 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.18 Total: -21.89 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.91 -8.34 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075138007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.282 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds