Wall clock time and date at job start Tue Mar 31 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99810 * 2 1 4 4 H 1.48505 * 109.47005 * 270.00141 * 3 2 1 5 5 H 1.48493 * 109.47087 * 29.99947 * 3 2 1 6 6 H 1.48502 * 109.47044 * 150.00291 * 3 2 1 7 7 C 1.37878 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46856 * 179.97438 * 9 7 2 11 11 O 1.45209 * 109.46831 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99494 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00749 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99455 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.99381 * 41.10097 * 14 12 11 16 16 C 1.54317 * 109.88291 * 280.00340 * 14 12 11 17 17 C 1.55163 * 102.94196 * 218.39099 * 16 14 12 18 18 H 1.08997 * 111.00477 * 153.61434 * 17 16 14 19 19 O 1.42905 * 111.00253 * 277.43043 * 17 16 14 20 20 C 1.54906 * 101.57948 * 35.49958 * 17 16 14 21 21 N 1.47026 * 109.87880 * 162.19201 * 14 12 11 22 22 C 1.34773 * 125.64941 * 298.40332 * 21 14 12 23 23 O 1.21273 * 120.00131 * 0.02562 * 22 21 14 24 24 C 1.50699 * 119.99609 * 179.97438 * 22 21 14 25 25 O 1.42901 * 109.47017 * 180.02562 * 24 22 21 26 26 C 1.35898 * 117.00308 * 180.02562 * 25 24 22 27 27 C 1.38734 * 120.05244 * 359.72851 * 26 25 24 28 28 C 1.38156 * 119.93970 * 179.74490 * 27 26 25 29 29 C 1.38263 * 120.05769 * 0.50887 * 28 27 26 30 30 C 1.38266 * 120.10851 * 359.76674 * 29 28 27 31 31 C 1.38144 * 120.06141 * 359.97438 * 30 29 28 32 32 H 0.96993 * 120.00371 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.47078 * 60.00262 * 9 7 2 34 34 H 1.09000 * 109.47309 * 299.99967 * 9 7 2 35 35 H 1.09000 * 109.46879 * 60.00366 * 10 9 7 36 36 H 1.08999 * 109.47300 * 299.99634 * 10 9 7 37 37 H 1.08999 * 110.72159 * 100.02942 * 16 14 12 38 38 H 1.08994 * 110.87650 * 336.82421 * 16 14 12 39 39 H 0.96696 * 114.00036 * 179.97438 * 19 17 16 40 40 H 1.09005 * 110.36758 * 81.83135 * 20 17 16 41 41 H 1.09006 * 110.36669 * 204.15241 * 20 17 16 42 42 H 1.09002 * 109.47481 * 300.00187 * 24 22 21 43 43 H 1.08999 * 109.47553 * 60.00621 * 24 22 21 44 44 H 1.08001 * 120.03126 * 359.97438 * 27 26 25 45 45 H 1.07999 * 119.96544 * 180.23343 * 28 27 26 46 46 H 1.07996 * 119.94344 * 179.74935 * 29 28 27 47 47 H 1.08009 * 119.97175 * 179.97438 * 30 29 28 48 48 H 1.07997 * 120.02948 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 8 1.5194 -4.9196 0.0032 12 6 2.2506 -6.0452 0.0037 13 8 3.4572 -5.9820 0.0033 14 6 1.5664 -7.3880 0.0061 15 1 0.7088 -7.3705 -0.6663 16 6 1.1052 -7.7395 1.4362 17 6 1.3815 -9.2637 1.5257 18 1 1.5504 -9.5702 2.5579 19 8 0.3148 -10.0129 0.9398 20 6 2.6775 -9.3945 0.6874 21 7 2.5120 -8.4316 -0.4165 22 6 3.1262 -8.4966 -1.6144 23 8 2.9151 -7.6446 -2.4511 24 6 4.0763 -9.6275 -1.9135 25 8 4.5957 -9.4760 -3.2361 26 6 5.4736 -10.4200 -3.6661 27 6 5.8322 -11.4675 -2.8301 28 6 6.7209 -12.4288 -3.2715 29 6 7.2608 -12.3418 -4.5414 30 6 6.9094 -11.2957 -5.3744 31 6 6.0171 -10.3348 -4.9397 32 1 -0.4850 0.8400 -0.0004 33 1 0.6241 -2.5575 -0.8880 34 1 0.6248 -2.5563 0.8920 35 1 2.8727 -3.6038 0.8910 36 1 2.8714 -3.6047 -0.8891 37 1 0.0423 -7.5323 1.5604 38 1 1.6915 -7.1971 2.1777 39 1 0.4431 -10.9707 0.9719 40 1 3.5474 -9.1341 1.2906 41 1 2.7756 -10.4071 0.2961 42 1 4.8975 -9.6113 -1.1970 43 1 3.5464 -10.5770 -1.8375 44 1 5.4142 -11.5334 -1.8365 45 1 6.9974 -13.2465 -2.6224 46 1 7.9584 -13.0921 -4.8831 47 1 7.3328 -11.2297 -6.3658 48 1 5.7433 -9.5177 -5.5906 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075145625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:04 Heat of formation + Delta-G solvation = -168.779332 kcal Electronic energy + Delta-G solvation = -32138.232502 eV Core-core repulsion = 27545.258863 eV Total energy + Delta-G solvation = -4592.973639 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15682 -40.42156 -39.29538 -38.42257 -37.41475 -36.15814 -35.45887 -33.32854 -32.15607 -31.38814 -30.44540 -30.37208 -29.47329 -28.29138 -25.36528 -24.34863 -23.07530 -22.57959 -22.06123 -21.27569 -20.70310 -19.40660 -18.80773 -18.31647 -17.50760 -17.28596 -16.74293 -16.57566 -16.25382 -16.15385 -15.93846 -15.72338 -15.37164 -14.89981 -14.63810 -14.50231 -14.43018 -14.30417 -13.79030 -13.62470 -13.53880 -13.03742 -12.99635 -12.82973 -12.71256 -12.35094 -12.31238 -12.06572 -11.96790 -11.48914 -11.39790 -11.26066 -11.18326 -11.02058 -10.82010 -10.72278 -10.66138 -10.26006 -10.05178 -9.64211 -9.61249 -9.37984 -9.28898 -8.98171 -8.57869 -8.41388 -6.07425 -4.11574 0.96251 1.08064 1.95016 2.31277 2.53307 2.99415 3.30606 3.30997 3.36951 3.41680 3.42721 3.58062 3.86789 3.95012 4.24910 4.35358 4.41073 4.49275 4.51973 4.56631 4.63852 4.76828 4.86698 4.93441 4.97593 5.00702 5.10082 5.13741 5.24910 5.26106 5.28990 5.45130 5.60387 5.63476 5.79564 5.92634 6.02178 6.10298 6.16177 6.16909 6.37495 6.67156 6.95108 6.99938 7.07790 7.12428 7.58764 7.66142 7.83815 7.90097 8.20200 8.28769 8.93700 9.52468 11.04069 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002069 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.685957 B =13528.686732 C =15803.444449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.450 3.550 13 O -0.506 6.506 14 C 0.152 3.848 15 H 0.117 0.883 16 C -0.111 4.111 17 C 0.094 3.906 18 H 0.092 0.908 19 O -0.551 6.551 20 C 0.065 3.935 21 N -0.597 5.597 22 C 0.536 3.464 23 O -0.497 6.497 24 C 0.053 3.947 25 O -0.288 6.288 26 C 0.131 3.869 27 C -0.212 4.212 28 C -0.080 4.080 29 C -0.160 4.160 30 C -0.079 4.079 31 C -0.147 4.147 32 H 0.263 0.737 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.381 0.619 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.351 -32.652 0.786 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.269 6.269 12 C 0.290 3.710 13 O -0.395 6.395 14 C 0.047 3.953 15 H 0.134 0.866 16 C -0.149 4.149 17 C 0.034 3.966 18 H 0.109 0.891 19 O -0.357 6.357 20 C -0.059 4.059 21 N -0.335 5.335 22 C 0.323 3.677 23 O -0.369 6.369 24 C -0.026 4.026 25 O -0.200 6.200 26 C 0.086 3.914 27 C -0.231 4.231 28 C -0.099 4.099 29 C -0.179 4.179 30 C -0.097 4.097 31 C -0.166 4.166 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.229 0.771 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.148 0.852 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.176 -31.201 0.010 32.254 hybrid contribution 0.963 0.314 0.315 1.061 sum 9.139 -30.887 0.325 32.212 Atomic orbital electron populations 1.69971 1.06060 1.26951 1.49819 1.24983 0.94929 0.99363 0.94899 0.86469 0.79727 0.82823 0.78271 1.20460 1.21049 1.19760 1.20975 0.93164 0.90117 1.52122 0.92305 1.19173 0.94173 0.88960 0.98912 1.23661 0.96407 0.78618 1.00900 1.86510 1.42288 1.15662 1.82392 1.23598 0.86809 0.87403 0.73148 1.90615 1.15638 1.88080 1.45138 1.21059 0.91962 0.83295 0.98966 0.86564 1.22677 1.05028 0.93629 0.93541 1.22919 0.85536 0.92412 0.95765 0.89076 1.86592 1.43902 1.22213 1.82964 1.23242 0.99790 0.93445 0.89385 1.47961 1.45874 1.25983 1.13709 1.19595 0.80734 0.86628 0.80770 1.90826 1.61176 1.39562 1.45331 1.22352 0.97452 0.97946 0.84827 1.86184 1.56986 1.46646 1.30184 1.19103 0.90209 0.88265 0.93873 1.21252 1.04101 0.97198 1.00553 1.20943 0.95324 0.97656 0.95938 1.21088 1.02394 0.99648 0.94744 1.21009 0.95775 0.93280 0.99669 1.20531 1.00059 1.01681 0.94332 0.92728 0.95273 0.95309 0.92408 0.92292 0.86966 0.88172 0.77102 0.89554 0.89623 0.88795 0.88975 0.85555 0.85738 0.85867 0.85199 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 9 C 0.02 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.08 1.81 5.41 37.16 0.20 2.02 16 11 O -0.35 -7.52 10.22 -39.25 -0.40 -7.92 16 12 C 0.45 8.46 6.41 36.01 0.23 8.69 16 13 O -0.51 -10.75 15.84 -18.75 -0.30 -11.05 16 14 C 0.15 2.08 3.37 -68.10 -0.23 1.85 16 15 H 0.12 1.65 8.14 -51.93 -0.42 1.22 16 16 C -0.11 -1.03 6.20 -24.90 -0.15 -1.18 16 17 C 0.09 0.54 4.43 -24.58 -0.11 0.43 16 18 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 19 O -0.55 -3.45 13.47 -35.23 -0.47 -3.93 16 20 C 0.06 0.41 6.42 -2.53 -0.02 0.39 16 21 N -0.60 -7.13 2.76 -164.32 -0.45 -7.59 16 22 C 0.54 7.76 7.31 -10.99 -0.08 7.68 16 23 O -0.50 -9.95 16.28 -14.35 -0.23 -10.19 16 24 C 0.05 0.54 4.23 36.01 0.15 0.69 16 25 O -0.29 -3.81 9.67 -39.33 -0.38 -4.19 16 26 C 0.13 1.43 6.69 -39.21 -0.26 1.17 16 27 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 28 C -0.08 -0.57 10.04 -39.60 -0.40 -0.97 16 29 C -0.16 -1.14 10.04 -39.56 -0.40 -1.54 16 30 C -0.08 -0.63 10.04 -39.61 -0.40 -1.02 16 31 C -0.15 -1.50 9.99 -39.43 -0.39 -1.89 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 36 H 0.06 1.44 8.13 -51.93 -0.42 1.02 16 37 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.10 0.90 7.85 -51.93 -0.41 0.49 16 39 H 0.38 0.57 9.12 45.56 0.42 0.99 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.26 7.48 -51.93 -0.39 -0.13 16 42 H 0.09 0.75 7.65 -51.93 -0.40 0.35 16 43 H 0.09 0.60 7.38 -51.93 -0.38 0.22 16 44 H 0.13 0.73 6.30 -52.49 -0.33 0.39 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 47 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 48 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 411.10 15.07 6.20 6.20 Total: -1.00 -40.05 411.10 -9.21 -49.25 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.11 Total: -2.22 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.77 Total: 0.85 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.28 Total: -33.69 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.79 Total: -37.27 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -40.05 -9.21 -49.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075145625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.528 kcal (2) G-P(sol) polarization free energy of solvation -40.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds