Wall clock time and date at job start Tue Mar 31 2020 05:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99810 * 2 1 4 4 H 1.48505 * 109.47005 * 270.00141 * 3 2 1 5 5 H 1.48493 * 109.47087 * 29.99947 * 3 2 1 6 6 H 1.48502 * 109.47044 * 150.00291 * 3 2 1 7 7 C 1.37878 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46856 * 179.97438 * 9 7 2 11 11 O 1.45209 * 109.46831 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99494 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00749 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99455 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.99381 * 41.10097 * 14 12 11 16 16 C 1.54317 * 109.88291 * 280.00340 * 14 12 11 17 17 C 1.55163 * 102.94196 * 218.39099 * 16 14 12 18 18 H 1.08997 * 111.00477 * 153.61434 * 17 16 14 19 19 O 1.42905 * 111.00253 * 277.43043 * 17 16 14 20 20 C 1.54906 * 101.57948 * 35.49958 * 17 16 14 21 21 N 1.47026 * 109.87880 * 162.19201 * 14 12 11 22 22 C 1.34773 * 125.64941 * 298.40332 * 21 14 12 23 23 O 1.21273 * 120.00131 * 0.02562 * 22 21 14 24 24 C 1.50699 * 119.99609 * 179.97438 * 22 21 14 25 25 O 1.42901 * 109.47017 * 180.02562 * 24 22 21 26 26 C 1.35898 * 117.00308 * 180.02562 * 25 24 22 27 27 C 1.38734 * 120.05244 * 359.72851 * 26 25 24 28 28 C 1.38156 * 119.93970 * 179.74490 * 27 26 25 29 29 C 1.38263 * 120.05769 * 0.50887 * 28 27 26 30 30 C 1.38266 * 120.10851 * 359.76674 * 29 28 27 31 31 C 1.38144 * 120.06141 * 359.97438 * 30 29 28 32 32 H 0.96993 * 120.00371 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.47078 * 60.00262 * 9 7 2 34 34 H 1.09000 * 109.47309 * 299.99967 * 9 7 2 35 35 H 1.09000 * 109.46879 * 60.00366 * 10 9 7 36 36 H 1.08999 * 109.47300 * 299.99634 * 10 9 7 37 37 H 1.08999 * 110.72159 * 100.02942 * 16 14 12 38 38 H 1.08994 * 110.87650 * 336.82421 * 16 14 12 39 39 H 0.96696 * 114.00036 * 179.97438 * 19 17 16 40 40 H 1.09005 * 110.36758 * 81.83135 * 20 17 16 41 41 H 1.09006 * 110.36669 * 204.15241 * 20 17 16 42 42 H 1.09002 * 109.47481 * 300.00187 * 24 22 21 43 43 H 1.08999 * 109.47553 * 60.00621 * 24 22 21 44 44 H 1.08001 * 120.03126 * 359.97438 * 27 26 25 45 45 H 1.07999 * 119.96544 * 180.23343 * 28 27 26 46 46 H 1.07996 * 119.94344 * 179.74935 * 29 28 27 47 47 H 1.08009 * 119.97175 * 179.97438 * 30 29 28 48 48 H 1.07997 * 120.02948 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 8 1.5194 -4.9196 0.0032 12 6 2.2506 -6.0452 0.0037 13 8 3.4572 -5.9820 0.0033 14 6 1.5664 -7.3880 0.0061 15 1 0.7088 -7.3705 -0.6663 16 6 1.1052 -7.7395 1.4362 17 6 1.3815 -9.2637 1.5257 18 1 1.5504 -9.5702 2.5579 19 8 0.3148 -10.0129 0.9398 20 6 2.6775 -9.3945 0.6874 21 7 2.5120 -8.4316 -0.4165 22 6 3.1262 -8.4966 -1.6144 23 8 2.9151 -7.6446 -2.4511 24 6 4.0763 -9.6275 -1.9135 25 8 4.5957 -9.4760 -3.2361 26 6 5.4736 -10.4200 -3.6661 27 6 5.8322 -11.4675 -2.8301 28 6 6.7209 -12.4288 -3.2715 29 6 7.2608 -12.3418 -4.5414 30 6 6.9094 -11.2957 -5.3744 31 6 6.0171 -10.3348 -4.9397 32 1 -0.4850 0.8400 -0.0004 33 1 0.6241 -2.5575 -0.8880 34 1 0.6248 -2.5563 0.8920 35 1 2.8727 -3.6038 0.8910 36 1 2.8714 -3.6047 -0.8891 37 1 0.0423 -7.5323 1.5604 38 1 1.6915 -7.1971 2.1777 39 1 0.4431 -10.9707 0.9719 40 1 3.5474 -9.1341 1.2906 41 1 2.7756 -10.4071 0.2961 42 1 4.8975 -9.6113 -1.1970 43 1 3.5464 -10.5770 -1.8375 44 1 5.4142 -11.5334 -1.8365 45 1 6.9974 -13.2465 -2.6224 46 1 7.9584 -13.0921 -4.8831 47 1 7.3328 -11.2297 -6.3658 48 1 5.7433 -9.5177 -5.5906 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075145625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:03 Heat of formation + Delta-G solvation = -197.465537 kcal Electronic energy + Delta-G solvation = -32139.476429 eV Core-core repulsion = 27545.258863 eV Total energy + Delta-G solvation = -4594.217566 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.161 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.25735 -41.32170 -40.53455 -39.22642 -38.17392 -37.75246 -36.28057 -35.51229 -33.14718 -32.34543 -31.97055 -31.06663 -30.35989 -29.06465 -27.23847 -25.47163 -23.87891 -23.44271 -23.00933 -22.65574 -22.01157 -20.52524 -19.54449 -19.37627 -18.63806 -18.30039 -18.12859 -17.67579 -17.61480 -17.33932 -17.06554 -16.75751 -16.54794 -16.11179 -15.71897 -15.37155 -15.20708 -15.09473 -15.08287 -14.57320 -14.46999 -14.35152 -14.29630 -13.75348 -13.70050 -13.57563 -13.31657 -13.19008 -13.05673 -12.88952 -12.65182 -12.59662 -12.49142 -12.16866 -11.99840 -11.91245 -11.86006 -11.64124 -11.58370 -11.47093 -11.33299 -10.95327 -10.65944 -10.00418 -9.96464 -9.23704 -8.30937 -6.44962 0.38053 0.45650 0.88817 1.13017 1.30807 1.37523 1.40096 1.51184 1.75332 2.35749 2.41494 2.83097 3.02765 3.03959 3.18967 3.37817 3.47134 3.61284 3.76735 3.93398 3.94822 3.96821 4.00125 4.04425 4.11089 4.15735 4.28743 4.44136 4.51148 4.52323 4.55966 4.59096 4.65683 4.68410 4.73876 4.88493 4.97696 5.07673 5.17557 5.31888 5.38868 5.44613 5.46195 5.59538 5.67625 5.80914 6.00823 6.10345 6.36434 6.57839 6.67721 6.83993 7.00031 7.24570 8.81737 Molecular weight = 363.16amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002069 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.685957 B =13528.686732 C =15803.444449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.093 3.907 11 O -0.364 6.364 12 C 0.444 3.556 13 O -0.533 6.533 14 C 0.151 3.849 15 H 0.103 0.897 16 C -0.112 4.112 17 C 0.110 3.890 18 H 0.135 0.865 19 O -0.573 6.573 20 C 0.054 3.946 21 N -0.594 5.594 22 C 0.522 3.478 23 O -0.573 6.573 24 C 0.059 3.941 25 O -0.329 6.329 26 C 0.102 3.898 27 C -0.211 4.211 28 C -0.080 4.080 29 C -0.161 4.161 30 C -0.085 4.085 31 C -0.178 4.178 32 H 0.269 0.731 33 H 0.001 0.999 34 H 0.014 0.986 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.404 0.596 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.147 0.853 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.000 -35.928 2.902 37.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.193 4.193 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.591 4.591 8 H 0.081 0.919 9 C -0.004 4.004 10 C 0.020 3.980 11 O -0.279 6.279 12 C 0.287 3.713 13 O -0.423 6.423 14 C 0.045 3.955 15 H 0.121 0.879 16 C -0.150 4.150 17 C 0.051 3.949 18 H 0.152 0.848 19 O -0.382 6.382 20 C -0.066 4.066 21 N -0.330 5.330 22 C 0.312 3.688 23 O -0.451 6.451 24 C -0.019 4.019 25 O -0.243 6.243 26 C 0.058 3.942 27 C -0.229 4.229 28 C -0.098 4.098 29 C -0.179 4.179 30 C -0.102 4.102 31 C -0.197 4.197 32 H 0.078 0.922 33 H 0.019 0.981 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.255 0.745 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.153 0.847 44 H 0.173 0.827 45 H 0.175 0.825 46 H 0.168 0.832 47 H 0.165 0.835 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.829 -34.565 2.176 36.001 hybrid contribution 0.432 1.207 -0.366 1.334 sum 10.261 -33.357 1.810 34.947 Atomic orbital electron populations 1.70091 1.07777 1.28391 1.50071 1.25995 0.95927 1.03465 0.93918 0.85288 0.78562 0.77586 0.78643 1.19759 1.19872 1.18676 1.21336 0.93583 0.91228 1.52942 0.91949 1.18979 0.94236 0.90467 0.96767 1.23157 0.95177 0.79214 1.00493 1.86508 1.42619 1.15828 1.82993 1.24800 0.86827 0.88100 0.71555 1.90582 1.16868 1.88389 1.46421 1.21258 0.91435 0.80934 1.01842 0.87901 1.22784 1.04986 0.97087 0.90135 1.22915 0.84743 0.89550 0.97736 0.84818 1.86551 1.44166 1.24274 1.83233 1.23767 1.00729 0.94144 0.87970 1.48203 1.44490 1.25979 1.14319 1.20603 0.80759 0.86906 0.80574 1.90782 1.63851 1.42562 1.47915 1.22522 0.97533 0.97440 0.84383 1.86125 1.58092 1.48325 1.31767 1.19381 0.90965 0.89203 0.94702 1.21573 1.03938 0.96153 1.01271 1.21392 0.94242 0.97931 0.96244 1.21494 1.02213 0.99464 0.94728 1.21270 0.95153 0.93018 1.00796 1.20691 1.01739 1.02470 0.94785 0.92202 0.98059 0.96736 0.91603 0.93719 0.86795 0.87782 0.74450 0.88045 0.85278 0.86194 0.84695 0.82743 0.82504 0.83241 0.83489 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.98 13.29 21.45 0.28 -56.69 16 2 C 0.01 0.36 5.46 84.65 0.46 0.83 16 3 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -33.03 9.11 25.60 0.23 -32.80 16 8 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.88 5.35 29.85 0.16 2.04 16 10 C 0.09 4.64 5.41 71.98 0.39 5.03 16 11 O -0.36 -16.43 10.22 -51.38 -0.53 -16.96 16 12 C 0.44 17.53 6.41 71.24 0.46 17.98 16 13 O -0.53 -23.56 15.84 21.98 0.35 -23.21 16 14 C 0.15 4.22 3.37 44.59 0.15 4.37 16 15 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 16 C -0.11 -1.92 6.20 31.78 0.20 -1.73 16 17 C 0.11 0.84 4.43 31.99 0.14 0.98 16 18 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 19 O -0.57 -5.11 13.47 -148.98 -2.01 -7.12 16 20 C 0.05 0.47 6.42 86.85 0.56 1.03 16 21 N -0.59 -13.64 2.76 -792.18 -2.18 -15.82 16 22 C 0.52 15.36 7.31 87.66 0.64 16.00 16 23 O -0.57 -24.74 16.28 16.04 0.26 -24.47 16 24 C 0.06 1.11 4.23 71.24 0.30 1.41 16 25 O -0.33 -9.02 9.67 -73.36 -0.71 -9.73 16 26 C 0.10 2.22 6.69 22.51 0.15 2.37 16 27 C -0.21 -2.90 9.04 22.37 0.20 -2.70 16 28 C -0.08 -0.85 10.04 22.26 0.22 -0.63 16 29 C -0.16 -1.86 10.04 22.28 0.22 -1.64 16 30 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 31 C -0.18 -3.82 9.99 22.37 0.22 -3.60 16 32 H 0.27 15.39 8.31 -92.71 -0.77 14.61 16 33 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 34 H 0.01 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 3.14 8.13 -2.39 -0.02 3.12 16 36 H 0.04 2.33 8.13 -2.39 -0.02 2.31 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 1.71 7.85 -2.39 -0.02 1.69 16 39 H 0.40 -0.62 9.12 -74.06 -0.68 -1.29 16 40 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.13 0.03 7.48 -2.38 -0.02 0.01 16 42 H 0.12 1.57 7.65 -2.39 -0.02 1.56 16 43 H 0.14 1.27 7.38 -2.39 -0.02 1.25 16 44 H 0.16 1.08 6.30 -2.91 -0.02 1.06 16 45 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 46 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.12 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -95.46 411.10 2.75 -92.72 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.31 Total: 6.16 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.94 Total: 7.88 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -1.90 Total: -72.51 kcal Atomic # 8 Polarization: -78.86 SS G_CDS: -2.63 Total: -81.49 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -95.46 2.75 -92.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075145625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.750 kcal (2) G-P(sol) polarization free energy of solvation -95.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds