Wall clock time and date at job start Tue Mar 31 2020 06:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 C 1.34771 * 120.00092 * 239.99940 * 12 2 1 15 15 O 1.21287 * 120.00010 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00122 * 179.97438 * 14 12 2 17 17 C 1.50698 * 109.47490 * 179.97438 * 16 14 12 18 18 C 1.33713 * 122.07554 * 124.73447 * 17 16 14 19 19 S 1.76258 * 108.21878 * 179.91235 * 18 17 16 20 20 C 1.76173 * 89.84166 * 0.29554 * 19 18 17 21 21 C 1.47842 * 125.47427 * 179.85001 * 20 19 18 22 22 C 1.39563 * 120.15095 * 179.69655 * 21 20 19 23 23 C 1.37942 * 119.86814 * 179.70287 * 22 21 20 24 24 C 1.38387 * 120.16748 * 0.57305 * 23 22 21 25 25 C 1.38292 * 120.30796 * 359.72622 * 24 23 22 26 26 C 1.38122 * 120.12699 * 359.97331 * 25 24 23 27 27 Cl 1.73598 * 120.08749 * 179.97438 * 26 25 24 28 28 N 1.30232 * 109.05384 * 359.82912 * 20 19 18 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 34 34 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 35 35 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 36 36 H 1.09000 * 109.47333 * 300.00318 * 16 14 12 37 37 H 1.09005 * 109.46872 * 59.99879 * 16 14 12 38 38 H 1.07994 * 125.88548 * 0.02944 * 18 17 16 39 39 H 1.07999 * 120.06242 * 0.02562 * 22 21 20 40 40 H 1.08004 * 119.91547 * 180.28141 * 23 22 21 41 41 H 1.08005 * 119.84213 * 179.74637 * 24 23 22 42 42 H 1.08001 * 119.94094 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 6 4.1330 0.2011 4.1340 18 6 3.8688 0.4506 5.4208 19 16 5.0673 1.5972 6.0171 20 6 5.8193 1.6321 4.4243 21 6 7.0037 2.4348 4.0521 22 6 7.5126 2.3729 2.7540 23 6 8.6143 3.1290 2.4114 24 6 9.2225 3.9389 3.3544 25 6 8.7279 4.0009 4.6443 26 6 7.6217 3.2538 4.9993 27 17 7.0021 3.3319 6.6190 28 7 5.1645 0.8368 3.6275 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1613 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 2.4471 -1.0881 3.9073 37 1 3.9005 -1.6025 3.0176 38 1 3.0616 0.0218 5.9960 39 1 7.0417 1.7383 2.0179 40 1 9.0061 3.0852 1.4058 41 1 10.0873 4.5256 3.0815 42 1 9.2075 4.6346 5.3757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:30 Heat of formation + Delta-G solvation = 34.927552 kcal Electronic energy + Delta-G solvation = -27081.217670 eV Core-core repulsion = 23179.280455 eV Total energy + Delta-G solvation = -3901.937215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.10392 -39.36154 -38.36486 -36.95068 -35.20328 -33.14911 -32.71537 -31.07238 -30.75512 -29.33481 -27.61841 -26.02517 -25.20972 -25.10117 -23.04256 -22.22193 -21.02666 -19.24698 -18.55485 -17.78289 -17.03068 -16.52475 -16.19119 -15.98813 -15.55980 -15.32091 -14.79750 -14.57529 -14.45928 -14.22873 -14.03661 -13.62640 -13.40889 -13.08480 -12.74986 -12.66896 -12.56347 -12.41012 -11.94320 -11.84699 -11.72345 -11.55252 -11.46506 -11.38395 -11.03729 -10.75914 -10.65491 -10.23902 -10.21223 -10.12051 -9.94376 -9.53646 -9.22491 -9.12414 -8.96446 -8.83913 -8.38843 -8.18318 -7.49904 -6.03090 -4.10650 0.16394 0.92364 1.34709 1.40155 1.62687 1.93257 2.92405 3.28445 3.35364 3.38398 3.48439 3.51783 3.81749 4.10415 4.43872 4.48516 4.71330 4.79067 4.97494 5.09956 5.17150 5.25706 5.27789 5.33701 5.37659 5.58929 5.60801 5.76102 5.83384 5.88035 6.05116 6.10918 6.15474 6.28269 6.33574 6.49014 6.80148 6.86304 7.10620 7.50468 7.58322 7.76641 7.89687 8.07060 8.25253 8.60797 8.89462 9.16775 9.55881 11.02211 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002662 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.276188 B =10516.389622 C =12124.481878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.597 5.597 13 C 0.087 3.913 14 C 0.508 3.492 15 O -0.535 6.535 16 C -0.072 4.072 17 C 0.094 3.906 18 C -0.271 4.271 19 S 0.115 5.885 20 C 0.091 3.909 21 C -0.004 4.004 22 C -0.058 4.058 23 C -0.112 4.112 24 C -0.099 4.099 25 C -0.109 4.109 26 C -0.033 4.033 27 Cl -0.037 7.037 28 N -0.417 5.417 29 H 0.093 0.907 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.254 1.586 18.712 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.329 5.329 13 C -0.058 4.058 14 C 0.294 3.706 15 O -0.412 6.412 16 C -0.115 4.115 17 C -0.039 4.039 18 C -0.410 4.410 19 S 0.370 5.630 20 C -0.184 4.184 21 C -0.008 4.008 22 C -0.079 4.079 23 C -0.130 4.130 24 C -0.118 4.118 25 C -0.128 4.128 26 C -0.062 4.062 27 Cl -0.007 7.007 28 N -0.129 5.129 29 H 0.111 0.889 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.191 0.809 39 H 0.167 0.833 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.543 2.732 19.083 23.559 hybrid contribution -0.533 -1.206 -1.210 1.789 sum 13.011 1.526 17.873 22.160 Atomic orbital electron populations 1.22098 0.98405 0.99266 1.00773 1.18891 0.90670 0.94512 0.79982 0.91980 1.21334 1.31594 1.12862 0.90333 0.92328 1.24896 0.95039 0.94980 0.98940 1.69886 1.36577 1.22628 1.23651 0.86506 0.79201 0.79280 0.82470 1.20671 1.21137 1.19929 1.48208 1.49424 1.11578 1.23733 1.21553 1.01607 0.83420 0.99171 1.20030 0.79318 0.87269 0.84032 1.90676 1.57185 1.16894 1.76444 1.20404 0.98505 0.97209 0.95349 1.19466 0.94235 0.99058 0.91149 1.27370 1.07113 1.06843 0.99666 1.85501 1.22514 1.40217 1.14733 1.25481 0.99584 1.01391 0.91910 1.17651 0.92915 0.96421 0.93835 1.21435 0.94625 0.97582 0.94276 1.21327 0.95509 0.95894 1.00292 1.21269 0.99849 0.98421 0.92276 1.20899 0.94979 0.99328 0.97568 1.21050 0.97959 1.01237 0.85948 1.98339 1.85103 1.96072 1.21215 1.66199 1.06458 1.06571 1.33714 0.88858 0.97072 0.95146 0.92762 0.93349 0.93076 0.90914 0.88030 0.87839 0.80914 0.83261 0.84480 0.84638 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.95 37.16 0.33 -3.24 16 2 C 0.26 6.77 2.64 -69.08 -0.18 6.59 16 3 H 0.06 1.90 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.38 8.37 -34.44 -0.29 -14.67 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 8 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.60 -12.97 2.75 -175.26 -0.48 -13.45 16 13 C 0.09 1.44 9.48 59.85 0.57 2.01 16 14 C 0.51 10.88 7.63 -10.99 -0.08 10.80 16 15 O -0.53 -13.82 14.75 5.55 0.08 -13.74 16 16 C -0.07 -1.13 4.72 -29.04 -0.14 -1.27 16 17 C 0.09 1.55 5.61 -84.39 -0.47 1.08 16 18 C -0.27 -3.70 11.02 29.15 0.32 -3.38 16 19 S 0.11 1.49 19.08 -107.50 -2.05 -0.56 16 20 C 0.09 1.43 7.33 -14.30 -0.10 1.32 16 21 C 0.00 -0.05 5.88 -104.95 -0.62 -0.67 16 22 C -0.06 -0.75 9.68 -39.20 -0.38 -1.13 16 23 C -0.11 -1.09 10.03 -39.63 -0.40 -1.49 16 24 C -0.10 -0.80 10.04 -39.51 -0.40 -1.20 16 25 C -0.11 -0.96 9.82 -39.60 -0.39 -1.35 16 26 C -0.03 -0.37 6.35 -39.10 -0.25 -0.62 16 27 Cl -0.04 -0.39 24.45 -51.86 -1.27 -1.65 16 28 N -0.42 -7.53 9.22 -7.55 -0.07 -7.60 16 29 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 35 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 36 H 0.10 1.25 7.27 -51.93 -0.38 0.87 16 37 H 0.10 1.46 8.11 -51.93 -0.42 1.04 16 38 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.15 2.16 7.82 -52.49 -0.41 1.75 16 40 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 42 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -34.19 375.43 -10.06 -44.26 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -4.97 Total: 1.25 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.57 Total: -5.53 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.08 Total: -45.98 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.05 Total: -0.56 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.27 Total: -1.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.19 -10.06 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.185 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds