Wall clock time and date at job start Tue Mar 31 2020 06:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00226 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00212 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00276 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 C 1.34771 * 120.00092 * 239.99940 * 12 2 1 15 15 O 1.21287 * 120.00010 * 359.97438 * 14 12 2 16 16 C 1.50696 * 120.00122 * 179.97438 * 14 12 2 17 17 C 1.50698 * 109.47490 * 179.97438 * 16 14 12 18 18 C 1.33713 * 122.07554 * 124.73447 * 17 16 14 19 19 S 1.76258 * 108.21878 * 179.91235 * 18 17 16 20 20 C 1.76173 * 89.84166 * 0.29554 * 19 18 17 21 21 C 1.47842 * 125.47427 * 179.85001 * 20 19 18 22 22 C 1.39563 * 120.15095 * 179.69655 * 21 20 19 23 23 C 1.37942 * 119.86814 * 179.70287 * 22 21 20 24 24 C 1.38387 * 120.16748 * 0.57305 * 23 22 21 25 25 C 1.38292 * 120.30796 * 359.72622 * 24 23 22 26 26 C 1.38122 * 120.12699 * 359.97331 * 25 24 23 27 27 Cl 1.73598 * 120.08749 * 179.97438 * 26 25 24 28 28 N 1.30232 * 109.05384 * 359.82912 * 20 19 18 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 34 34 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 35 35 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 36 36 H 1.09000 * 109.47333 * 300.00318 * 16 14 12 37 37 H 1.09005 * 109.46872 * 59.99879 * 16 14 12 38 38 H 1.07994 * 125.88548 * 0.02944 * 18 17 16 39 39 H 1.07999 * 120.06242 * 0.02562 * 22 21 20 40 40 H 1.08004 * 119.91547 * 180.28141 * 23 22 21 41 41 H 1.08005 * 119.84213 * 179.74637 * 24 23 22 42 42 H 1.08001 * 119.94094 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1254 1.8911 16 6 3.2951 -0.7459 3.3140 17 6 4.1330 0.2011 4.1340 18 6 3.8688 0.4506 5.4208 19 16 5.0673 1.5972 6.0171 20 6 5.8193 1.6321 4.4243 21 6 7.0037 2.4348 4.0521 22 6 7.5126 2.3729 2.7540 23 6 8.6143 3.1290 2.4114 24 6 9.2225 3.9389 3.3544 25 6 8.7279 4.0009 4.6443 26 6 7.6217 3.2538 4.9993 27 17 7.0021 3.3319 6.6190 28 7 5.1645 0.8368 3.6275 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7089 1.1613 -3.4844 33 1 2.4157 -2.7377 0.9718 34 1 1.6238 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9846 36 1 2.4471 -1.0881 3.9073 37 1 3.9005 -1.6025 3.0176 38 1 3.0616 0.0218 5.9960 39 1 7.0417 1.7383 2.0179 40 1 9.0061 3.0852 1.4058 41 1 10.0873 4.5256 3.0815 42 1 9.2075 4.6346 5.3757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075582819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:29 Heat of formation + Delta-G solvation = 14.433208 kcal Electronic energy + Delta-G solvation = -27082.106372 eV Core-core repulsion = 23179.280455 eV Total energy + Delta-G solvation = -3902.825917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30125 -40.45474 -39.70472 -37.78079 -37.04612 -34.85405 -34.01447 -32.12094 -31.87450 -30.90785 -28.87761 -27.54259 -27.26666 -26.14927 -23.91568 -23.50158 -22.48420 -20.45913 -19.97217 -18.91112 -18.50874 -17.99268 -17.82421 -17.05754 -16.96818 -16.44067 -16.30775 -15.99554 -15.62995 -15.46362 -14.97546 -14.71211 -14.59840 -14.46804 -14.19492 -13.98152 -13.92540 -13.69334 -13.44565 -13.12679 -12.93673 -12.89994 -12.75595 -12.67867 -12.59226 -12.55524 -12.32962 -12.18106 -12.13245 -11.21793 -11.15860 -10.91090 -10.66252 -10.59535 -10.43322 -10.17664 -9.86691 -9.27869 -9.18597 -8.14619 -6.31430 -0.79649 0.10872 0.32889 0.44713 0.69052 0.95601 1.39323 1.41357 1.51385 1.81753 1.88918 2.36784 2.56334 2.65984 2.86359 3.12702 3.63239 3.72553 3.96585 4.03603 4.10950 4.25636 4.29305 4.32721 4.44736 4.48364 4.55825 4.66126 4.75893 4.82347 4.85095 4.88331 5.01993 5.05056 5.09583 5.18662 5.25882 5.39064 5.46973 5.64276 5.69383 5.72010 6.06246 6.17193 6.77138 6.81453 6.89541 7.34290 7.55352 8.89614 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.002662 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.276188 B =10516.389622 C =12124.481878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.264 3.736 3 H 0.002 0.998 4 C -0.537 4.537 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.605 5.605 13 C 0.081 3.919 14 C 0.497 3.503 15 O -0.592 6.592 16 C -0.057 4.057 17 C 0.058 3.942 18 C -0.265 4.265 19 S 0.156 5.844 20 C 0.069 3.931 21 C -0.034 4.034 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.083 4.083 25 C -0.102 4.102 26 C -0.041 4.041 27 Cl -0.032 7.032 28 N -0.464 5.464 29 H 0.066 0.934 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.208 0.792 39 H 0.117 0.883 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.534 0.691 20.477 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.162 3.838 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.336 5.336 13 C -0.061 4.061 14 C 0.285 3.715 15 O -0.473 6.473 16 C -0.099 4.099 17 C -0.074 4.074 18 C -0.403 4.403 19 S 0.412 5.588 20 C -0.205 4.205 21 C -0.039 4.039 22 C -0.106 4.106 23 C -0.130 4.130 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.070 4.070 27 Cl -0.002 7.002 28 N -0.178 5.178 29 H 0.085 0.915 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.225 0.775 39 H 0.135 0.865 40 H 0.174 0.826 41 H 0.195 0.805 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.815 1.788 20.876 25.661 hybrid contribution -0.848 -0.820 -1.697 2.067 sum 13.966 0.968 19.179 23.745 Atomic orbital electron populations 1.21871 0.97157 1.00168 0.99817 1.18454 0.91538 0.91947 0.81887 0.97986 1.21589 1.31753 1.12934 0.91283 0.92332 1.25762 0.95128 0.95647 1.02083 1.70036 1.37505 1.23923 1.24359 0.85449 0.78853 0.78284 0.78393 1.19051 1.21084 1.19654 1.48232 1.49448 1.13485 1.22453 1.21846 1.01436 0.80245 1.02545 1.21087 0.78228 0.86879 0.85299 1.90644 1.59007 1.19709 1.77907 1.20399 0.99944 0.96743 0.92775 1.19693 0.94877 1.00433 0.92417 1.27816 1.07534 1.05957 0.99020 1.85216 1.21520 1.39359 1.12714 1.25913 1.00175 1.01330 0.93114 1.17845 0.93403 0.97854 0.94810 1.21333 0.96399 0.98952 0.93923 1.21600 0.94341 0.95249 1.01798 1.21734 1.00080 0.97099 0.91288 1.21356 0.93688 0.98385 0.98568 1.21202 0.98652 1.01376 0.85765 1.98328 1.85191 1.95967 1.20694 1.66185 1.07883 1.08173 1.35575 0.91544 0.96231 0.93117 0.92689 0.92890 0.88168 0.91117 0.83768 0.86194 0.77471 0.86494 0.82589 0.80517 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.91 16 2 C 0.26 14.35 2.64 44.24 0.12 14.47 16 3 H 0.00 0.14 6.90 -2.39 -0.02 0.13 16 4 C -0.54 -30.33 8.37 25.60 0.21 -30.11 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.74 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.63 11.32 21.45 0.24 -54.39 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 N -0.60 -26.57 2.75 -826.79 -2.28 -28.85 16 13 C 0.08 2.56 9.48 127.77 1.21 3.77 16 14 C 0.50 21.82 7.63 87.66 0.67 22.48 16 15 O -0.59 -32.60 14.75 -3.05 -0.04 -32.65 16 16 C -0.06 -1.72 4.72 29.10 0.14 -1.58 16 17 C 0.06 1.92 5.61 41.61 0.23 2.16 16 18 C -0.26 -6.84 11.02 66.79 0.74 -6.10 16 19 S 0.16 3.97 19.08 -56.49 -1.08 2.89 16 20 C 0.07 2.25 7.33 87.47 0.64 2.89 16 21 C -0.03 -0.99 5.88 -20.08 -0.12 -1.11 16 22 C -0.08 -2.36 9.68 22.52 0.22 -2.14 16 23 C -0.11 -2.13 10.03 22.24 0.22 -1.91 16 24 C -0.08 -1.12 10.04 22.32 0.22 -0.90 16 25 C -0.10 -1.54 9.82 22.26 0.22 -1.32 16 26 C -0.04 -0.89 6.35 22.58 0.14 -0.75 16 27 Cl -0.03 -0.62 24.45 -2.72 -0.07 -0.69 16 28 N -0.46 -17.68 9.22 -177.81 -1.64 -19.32 16 29 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.05 2.26 6.66 -2.38 -0.02 2.24 16 32 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 2.15 6.44 -2.39 -0.02 2.14 16 35 H 0.07 2.25 6.43 -2.38 -0.02 2.24 16 36 H 0.14 3.01 7.27 -2.39 -0.02 2.99 16 37 H 0.12 3.19 8.11 -2.38 -0.02 3.17 16 38 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 39 H 0.12 3.91 7.82 -2.91 -0.02 3.89 16 40 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 41 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -81.95 375.43 4.18 -77.77 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.06 Total: 13.84 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.96 Total: -4.87 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.67 Total: -102.55 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.04 Total: -32.65 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.08 Total: 2.89 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -81.95 4.18 -77.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.202 kcal (2) G-P(sol) polarization free energy of solvation -81.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds