Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47289 * 2 1 4 4 C 1.42903 * 113.99846 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47016 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47157 * 60.32461 * 5 4 3 7 7 C 1.46896 * 110.99870 * 176.69104 * 6 5 4 8 8 C 1.53238 * 109.34063 * 172.74795 * 7 6 5 9 9 N 1.47075 * 108.52158 * 53.82997 * 8 7 6 10 10 C 1.34777 * 120.88437 * 128.84146 * 9 8 7 11 11 O 1.21594 * 119.99505 * 354.82549 * 10 9 8 12 12 N 1.34770 * 120.00374 * 174.83246 * 10 9 8 13 13 C 1.40023 * 120.00063 * 185.89501 * 12 10 9 14 14 C 1.38913 * 120.00256 * 34.21622 * 13 12 10 15 15 C 1.38006 * 120.00277 * 179.79454 * 14 13 12 16 16 C 1.38912 * 120.00022 * 0.45641 * 15 14 13 17 17 O 1.35781 * 120.00115 * 179.77363 * 16 15 14 18 18 C 1.34813 * 116.99762 * 174.97787 * 17 16 15 19 19 H 1.08001 * 120.00325 * 5.16018 * 18 17 16 20 20 C 1.38633 * 119.99499 * 185.16604 * 18 17 16 21 21 N 1.31573 * 120.00295 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47352 * 89.99619 * 22 20 18 24 24 H 1.48496 * 109.47130 * 209.99993 * 22 20 18 25 25 H 1.48508 * 109.46927 * 329.99669 * 22 20 18 26 26 C 1.38904 * 119.99813 * 359.79017 * 16 15 14 27 27 C 1.38009 * 120.00354 * 359.97438 * 26 16 15 28 28 C 1.47081 * 118.23798 * 308.81339 * 9 8 7 29 29 C 1.46895 * 111.00187 * 52.39084 * 6 5 4 30 30 H 1.09005 * 109.46572 * 59.99921 * 1 2 3 31 31 H 1.08994 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46970 * 300.00416 * 1 2 3 33 33 H 1.09003 * 109.46970 * 239.99584 * 2 1 3 34 34 H 1.08999 * 109.46847 * 120.00418 * 2 1 3 35 35 H 1.08999 * 109.47159 * 60.00237 * 4 3 2 36 36 H 1.08991 * 109.47025 * 299.99823 * 4 3 2 37 37 H 1.09007 * 109.46809 * 300.32238 * 5 4 3 38 38 H 1.08998 * 109.47147 * 180.33144 * 5 4 3 39 39 H 1.09002 * 109.49363 * 52.78847 * 7 6 5 40 40 H 1.09001 * 109.49385 * 292.70840 * 7 6 5 41 41 H 1.09001 * 109.63133 * 173.54245 * 8 7 6 42 42 H 1.09005 * 109.62734 * 293.92521 * 8 7 6 43 43 H 0.97002 * 120.00002 * 5.89461 * 12 10 9 44 44 H 1.07999 * 119.99948 * 0.02562 * 14 13 12 45 45 H 1.08003 * 120.00510 * 180.23154 * 15 14 13 46 46 H 0.97000 * 120.00050 * 180.02562 * 21 20 18 47 47 H 1.07997 * 119.99918 * 179.97438 * 26 16 15 48 48 H 1.08002 * 120.00130 * 179.97438 * 27 26 16 49 49 H 1.09001 * 109.62954 * 170.89146 * 28 9 8 50 50 H 1.08998 * 109.62856 * 291.48146 * 28 9 8 51 51 H 1.08997 * 109.49348 * 67.28770 * 29 6 5 52 52 H 1.09005 * 109.51380 * 307.22485 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.2899 3.5875 1.2041 7 6 3.7154 4.9915 1.2786 8 6 2.9939 5.6794 2.4424 9 7 3.2242 4.8941 3.6644 10 6 3.6740 5.4826 4.7904 11 8 3.9843 6.6582 4.7797 12 7 3.7798 4.7680 5.9282 13 6 4.1282 5.4054 7.1253 14 6 3.6995 6.7035 7.3715 15 6 4.0392 7.3302 8.5532 16 6 4.8180 6.6662 9.4925 17 8 5.1561 7.2843 10.6532 18 6 5.8241 6.5502 11.5655 19 1 6.1395 5.5458 11.3244 20 6 6.1060 7.0846 12.8132 21 7 5.7221 8.3083 13.1068 22 14 7.0309 6.0671 14.0777 23 1 8.4903 6.2953 13.9251 24 1 6.6070 6.4695 15.4428 25 1 6.7306 4.6276 13.8703 26 6 5.2510 5.3699 9.2442 27 6 4.9072 4.7415 8.0646 28 6 2.9501 3.4496 3.6254 29 6 3.6733 2.8496 2.4149 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8333 0.9766 -0.8908 36 1 3.8340 0.9764 0.8891 37 1 3.4175 3.4236 -0.8866 38 1 4.9121 3.0243 -0.0063 39 1 3.4656 5.4973 0.3459 40 1 4.7924 5.0371 1.4403 41 1 3.3893 6.6865 2.5744 42 1 1.9256 5.7302 2.2322 43 1 3.6147 3.8122 5.9178 44 1 3.0971 7.2212 6.6396 45 1 3.7028 8.3381 8.7462 46 1 5.9197 8.6824 13.9798 47 1 5.8568 4.8538 9.9743 48 1 5.2442 3.7337 7.8714 49 1 3.3166 2.9825 4.5395 50 1 1.8771 3.2830 3.5303 51 1 4.7508 2.9249 2.5609 52 1 3.3933 1.8017 2.3067 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075610502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = -43.219554 kcal Electronic energy + Delta-G solvation = -32171.354530 eV Core-core repulsion = 27751.951417 eV Total energy + Delta-G solvation = -4419.403113 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.71243 -39.35225 -38.69091 -37.85417 -36.49007 -34.93994 -33.97165 -32.22310 -31.96012 -31.35698 -30.16961 -29.77580 -27.90545 -26.36661 -25.24682 -24.25415 -23.18820 -22.80138 -22.16071 -21.61792 -20.81736 -19.51265 -18.50050 -17.87497 -17.26548 -17.08469 -16.91549 -16.39958 -15.76648 -15.59598 -15.41074 -15.20656 -14.93300 -14.54241 -14.46610 -14.36144 -13.98682 -13.95069 -13.63437 -13.47801 -13.32874 -12.91402 -12.78191 -12.70036 -12.42346 -12.33576 -12.18113 -11.88501 -11.76943 -11.66941 -11.65294 -11.54693 -11.45473 -11.35934 -11.02225 -11.00303 -10.70794 -10.44030 -9.99433 -9.91500 -9.53672 -9.24789 -8.97707 -8.68618 -8.52946 -8.15767 -6.85495 -6.40645 -3.98741 2.20023 2.26506 2.60237 3.13877 3.15326 3.20023 3.20327 3.31972 3.48810 3.86139 3.99892 4.38695 4.47199 4.59516 4.62853 4.64768 4.67848 4.74875 4.84756 4.90667 4.92499 4.93024 4.99040 5.10221 5.13968 5.19186 5.30894 5.36787 5.37319 5.37797 5.49217 5.52357 5.55107 5.59798 5.72254 5.78484 5.81720 6.12831 6.20907 6.29063 6.38315 6.51629 6.62874 6.74847 6.84081 6.87470 6.95892 7.14913 7.26815 7.28611 7.47000 7.84340 8.00339 8.04062 8.69384 9.04719 9.76132 10.77439 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.001583 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.754875 B =17678.388771 C =18370.914708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.061 3.939 5 C 0.057 3.943 6 N -0.525 5.525 7 C 0.041 3.959 8 C 0.136 3.864 9 N -0.633 5.633 10 C 0.704 3.296 11 O -0.574 6.574 12 N -0.676 5.676 13 C 0.057 3.943 14 C -0.066 4.066 15 C -0.176 4.176 16 C 0.145 3.855 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.218 4.218 27 C -0.093 4.093 28 C 0.118 3.882 29 C 0.037 3.963 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.396 0.604 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.269 0.731 47 H 0.131 0.869 48 H 0.109 0.891 49 H 0.079 0.921 50 H 0.079 0.921 51 H 0.037 0.963 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 -17.821 -27.405 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.289 6.289 4 C -0.016 4.016 5 C -0.070 4.070 6 N -0.251 5.251 7 C -0.088 4.088 8 C 0.013 3.987 9 N -0.372 5.372 10 C 0.406 3.594 11 O -0.450 6.450 12 N -0.325 5.325 13 C -0.036 4.036 14 C -0.086 4.086 15 C -0.196 4.196 16 C 0.091 3.909 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.238 4.238 27 C -0.114 4.114 28 C -0.006 4.006 29 C -0.091 4.091 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.232 0.768 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.079 0.921 47 H 0.149 0.851 48 H 0.127 0.873 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.055 0.945 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.131 -16.397 -27.166 32.522 hybrid contribution 1.571 -1.501 0.576 2.248 sum -5.560 -17.898 -26.590 32.531 Atomic orbital electron populations 1.21718 0.93630 1.02090 1.03311 1.22455 0.95817 0.84178 0.99696 1.88041 1.20024 1.25555 1.95250 1.22594 0.82549 0.96389 1.00100 1.22150 0.97247 0.93440 0.94204 1.61909 1.59767 1.01848 1.01532 1.22539 0.97937 0.88806 0.99505 1.21515 1.00370 0.95568 0.81273 1.47303 1.70444 1.08399 1.11060 1.15838 0.78464 0.85122 0.79986 1.90937 1.55339 1.14756 1.84013 1.42515 1.72981 1.10906 1.06087 1.17039 1.05007 0.94913 0.86646 1.20605 0.98837 0.93600 0.95603 1.20128 1.04205 1.01123 0.94112 1.19399 0.92541 0.90899 0.88013 1.83993 1.64971 1.37727 1.21467 1.21304 1.34115 0.98671 0.92662 0.89126 1.25275 0.97689 0.96506 0.97091 1.70049 1.43520 1.13940 1.22262 0.85724 0.79240 0.79242 0.79262 1.19946 1.20301 1.19257 1.20946 1.07529 0.96403 0.98943 1.20428 0.97412 0.99196 0.94355 1.21677 1.00996 0.80479 0.97408 1.22561 0.97772 0.98677 0.90119 0.91916 0.91300 0.91643 0.93805 0.93643 0.92973 0.93127 0.89548 0.93363 0.89406 0.94291 0.88345 0.90901 0.76812 0.85792 0.86134 0.92078 0.85147 0.87337 0.90322 0.90318 0.94470 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.39 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.37 -2.87 10.21 -35.23 -0.36 -3.23 16 4 C 0.06 0.35 5.53 37.16 0.21 0.56 16 5 C 0.06 0.36 5.52 -3.82 -0.02 0.34 16 6 N -0.53 -4.13 4.60 -234.32 -1.08 -5.21 16 7 C 0.04 0.34 5.62 -3.70 -0.02 0.31 16 8 C 0.14 1.39 6.61 -3.61 -0.02 1.37 16 9 N -0.63 -7.31 3.01 -178.19 -0.54 -7.85 16 10 C 0.70 10.92 8.03 -86.92 -0.70 10.22 16 11 O -0.57 -11.22 13.57 5.28 0.07 -11.15 16 12 N -0.68 -9.95 5.25 -14.18 -0.07 -10.02 16 13 C 0.06 1.05 6.26 -83.61 -0.52 0.53 16 14 C -0.07 -1.36 8.64 -39.42 -0.34 -1.70 16 15 C -0.18 -3.98 9.99 -39.42 -0.39 -4.37 16 16 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 17 O -0.18 -5.17 9.76 0.00 0.00 -5.17 16 18 C -0.39 -11.01 9.48 30.88 0.29 -10.72 16 19 H 0.09 2.34 5.19 -52.49 -0.27 2.07 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 26 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 27 C -0.09 -1.72 9.96 -39.41 -0.39 -2.12 16 28 C 0.12 0.99 6.54 -3.60 -0.02 0.97 16 29 C 0.04 0.28 5.24 -3.70 -0.02 0.26 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.05 0.26 6.14 -51.93 -0.32 -0.06 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 0.59 8.11 -51.93 -0.42 0.17 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 1.15 7.04 -51.93 -0.37 0.79 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.40 4.41 6.35 -40.82 -0.26 4.15 16 44 H 0.12 2.50 6.50 -52.49 -0.34 2.16 16 45 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.13 2.81 5.62 -52.49 -0.30 2.51 16 48 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 49 H 0.08 0.55 5.73 -51.93 -0.30 0.25 16 50 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.09 0.56 5.77 -51.93 -0.30 0.26 16 LS Contribution 415.20 15.07 6.26 6.26 Total: -1.00 -34.77 415.20 -9.96 -44.73 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.93 Total: 5.84 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.05 Total: -5.00 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.93 Total: -47.88 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.29 Total: -19.54 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.77 -9.96 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.512 kcal (2) G-P(sol) polarization free energy of solvation -34.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds