Wall clock time and date at job start Tue Mar 31 2020 06:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47289 * 2 1 4 4 C 1.42903 * 113.99846 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47016 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.47157 * 60.32461 * 5 4 3 7 7 C 1.46896 * 110.99870 * 176.69104 * 6 5 4 8 8 C 1.53238 * 109.34063 * 172.74795 * 7 6 5 9 9 N 1.47075 * 108.52158 * 53.82997 * 8 7 6 10 10 C 1.34777 * 120.88437 * 128.84146 * 9 8 7 11 11 O 1.21594 * 119.99505 * 354.82549 * 10 9 8 12 12 N 1.34770 * 120.00374 * 174.83246 * 10 9 8 13 13 C 1.40023 * 120.00063 * 185.89501 * 12 10 9 14 14 C 1.38913 * 120.00256 * 34.21622 * 13 12 10 15 15 C 1.38006 * 120.00277 * 179.79454 * 14 13 12 16 16 C 1.38912 * 120.00022 * 0.45641 * 15 14 13 17 17 O 1.35781 * 120.00115 * 179.77363 * 16 15 14 18 18 C 1.34813 * 116.99762 * 174.97787 * 17 16 15 19 19 H 1.08001 * 120.00325 * 5.16018 * 18 17 16 20 20 C 1.38633 * 119.99499 * 185.16604 * 18 17 16 21 21 N 1.31573 * 120.00295 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99718 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47352 * 89.99619 * 22 20 18 24 24 H 1.48496 * 109.47130 * 209.99993 * 22 20 18 25 25 H 1.48508 * 109.46927 * 329.99669 * 22 20 18 26 26 C 1.38904 * 119.99813 * 359.79017 * 16 15 14 27 27 C 1.38009 * 120.00354 * 359.97438 * 26 16 15 28 28 C 1.47081 * 118.23798 * 308.81339 * 9 8 7 29 29 C 1.46895 * 111.00187 * 52.39084 * 6 5 4 30 30 H 1.09005 * 109.46572 * 59.99921 * 1 2 3 31 31 H 1.08994 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46970 * 300.00416 * 1 2 3 33 33 H 1.09003 * 109.46970 * 239.99584 * 2 1 3 34 34 H 1.08999 * 109.46847 * 120.00418 * 2 1 3 35 35 H 1.08999 * 109.47159 * 60.00237 * 4 3 2 36 36 H 1.08991 * 109.47025 * 299.99823 * 4 3 2 37 37 H 1.09007 * 109.46809 * 300.32238 * 5 4 3 38 38 H 1.08998 * 109.47147 * 180.33144 * 5 4 3 39 39 H 1.09002 * 109.49363 * 52.78847 * 7 6 5 40 40 H 1.09001 * 109.49385 * 292.70840 * 7 6 5 41 41 H 1.09001 * 109.63133 * 173.54245 * 8 7 6 42 42 H 1.09005 * 109.62734 * 293.92521 * 8 7 6 43 43 H 0.97002 * 120.00002 * 5.89461 * 12 10 9 44 44 H 1.07999 * 119.99948 * 0.02562 * 14 13 12 45 45 H 1.08003 * 120.00510 * 180.23154 * 15 14 13 46 46 H 0.97000 * 120.00050 * 180.02562 * 21 20 18 47 47 H 1.07997 * 119.99918 * 179.97438 * 26 16 15 48 48 H 1.08002 * 120.00130 * 179.97438 * 27 26 16 49 49 H 1.09001 * 109.62954 * 170.89146 * 28 9 8 50 50 H 1.08998 * 109.62856 * 291.48146 * 28 9 8 51 51 H 1.08997 * 109.49348 * 67.28770 * 29 6 5 52 52 H 1.09005 * 109.51380 * 307.22485 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 0.0001 6 7 3.2899 3.5875 1.2041 7 6 3.7154 4.9915 1.2786 8 6 2.9939 5.6794 2.4424 9 7 3.2242 4.8941 3.6644 10 6 3.6740 5.4826 4.7904 11 8 3.9843 6.6582 4.7797 12 7 3.7798 4.7680 5.9282 13 6 4.1282 5.4054 7.1253 14 6 3.6995 6.7035 7.3715 15 6 4.0392 7.3302 8.5532 16 6 4.8180 6.6662 9.4925 17 8 5.1561 7.2843 10.6532 18 6 5.8241 6.5502 11.5655 19 1 6.1395 5.5458 11.3244 20 6 6.1060 7.0846 12.8132 21 7 5.7221 8.3083 13.1068 22 14 7.0309 6.0671 14.0777 23 1 8.4903 6.2953 13.9251 24 1 6.6070 6.4695 15.4428 25 1 6.7306 4.6276 13.8703 26 6 5.2510 5.3699 9.2442 27 6 4.9072 4.7415 8.0646 28 6 2.9501 3.4496 3.6254 29 6 3.6733 2.8496 2.4149 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8333 0.9766 -0.8908 36 1 3.8340 0.9764 0.8891 37 1 3.4175 3.4236 -0.8866 38 1 4.9121 3.0243 -0.0063 39 1 3.4656 5.4973 0.3459 40 1 4.7924 5.0371 1.4403 41 1 3.3893 6.6865 2.5744 42 1 1.9256 5.7302 2.2322 43 1 3.6147 3.8122 5.9178 44 1 3.0971 7.2212 6.6396 45 1 3.7028 8.3381 8.7462 46 1 5.9197 8.6824 13.9798 47 1 5.8568 4.8538 9.9743 48 1 5.2442 3.7337 7.8714 49 1 3.3166 2.9825 4.5395 50 1 1.8771 3.2830 3.5303 51 1 4.7508 2.9249 2.5609 52 1 3.3933 1.8017 2.3067 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075610502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:23 Heat of formation + Delta-G solvation = -67.577403 kcal Electronic energy + Delta-G solvation = -32172.410765 eV Core-core repulsion = 27751.951417 eV Total energy + Delta-G solvation = -4420.459348 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.88284 -40.67234 -39.80751 -38.66735 -38.00750 -35.91188 -35.35218 -34.13506 -32.57925 -32.05771 -31.85313 -30.46340 -29.33568 -27.48965 -26.94493 -24.94873 -24.03147 -23.62942 -23.55933 -22.65947 -21.91716 -20.69531 -19.77709 -19.46541 -18.90531 -17.96897 -17.55916 -17.47879 -16.77155 -16.44372 -16.34778 -16.16322 -16.08447 -15.89301 -15.63015 -15.49205 -15.28276 -15.18422 -14.76483 -14.60932 -14.50854 -14.22720 -14.01872 -13.59624 -13.42700 -13.36251 -13.21493 -13.12653 -12.86537 -12.71485 -12.66640 -12.46528 -12.40207 -12.30230 -12.17335 -12.10054 -11.95464 -11.55832 -11.30799 -11.29721 -10.98028 -10.56609 -10.41160 -9.85284 -9.82878 -9.23628 -8.55963 -8.43203 -6.10808 0.53318 0.58081 1.37913 1.45983 1.51017 1.55852 2.04421 2.20642 2.73885 2.82013 2.85484 2.93856 3.18371 3.53047 3.81472 3.89261 3.96597 4.05555 4.13366 4.18141 4.20082 4.24531 4.27371 4.34235 4.41076 4.47018 4.49016 4.50836 4.57589 4.62258 4.63510 4.74467 4.75965 4.82432 4.84417 4.94379 4.97065 5.05729 5.06310 5.11028 5.19052 5.30915 5.33930 5.36183 5.49691 5.58521 5.69886 5.83862 6.02385 6.04595 6.06423 6.18780 6.42596 6.85277 7.00731 7.46948 7.81891 8.79969 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.001583 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.754875 B =17678.388771 C =18370.914708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.393 6.393 4 C 0.060 3.940 5 C 0.057 3.943 6 N -0.534 5.534 7 C 0.050 3.950 8 C 0.133 3.867 9 N -0.624 5.624 10 C 0.700 3.300 11 O -0.619 6.619 12 N -0.664 5.664 13 C 0.083 3.917 14 C -0.072 4.072 15 C -0.187 4.187 16 C 0.106 3.894 17 O -0.232 6.232 18 C -0.413 4.413 19 H 0.107 0.893 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.249 1.249 26 C -0.217 4.217 27 C -0.081 4.081 28 C 0.113 3.887 29 C 0.042 3.958 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.029 0.971 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.417 0.583 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.271 0.729 47 H 0.134 0.866 48 H 0.158 0.842 49 H 0.096 0.904 50 H 0.086 0.914 51 H 0.033 0.967 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -22.042 -29.432 37.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.313 6.313 4 C -0.017 4.017 5 C -0.070 4.070 6 N -0.259 5.259 7 C -0.079 4.079 8 C 0.010 3.990 9 N -0.361 5.361 10 C 0.402 3.598 11 O -0.499 6.499 12 N -0.315 5.315 13 C -0.011 4.011 14 C -0.093 4.093 15 C -0.207 4.207 16 C 0.056 3.944 17 O -0.139 6.139 18 C -0.489 4.489 19 H 0.124 0.876 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.190 1.190 24 H -0.199 1.199 25 H -0.172 1.172 26 C -0.237 4.237 27 C -0.101 4.101 28 C -0.009 4.009 29 C -0.087 4.087 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.121 0.879 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.258 0.742 44 H 0.143 0.857 45 H 0.130 0.870 46 H 0.080 0.920 47 H 0.151 0.849 48 H 0.176 0.824 49 H 0.114 0.886 50 H 0.104 0.896 51 H 0.051 0.949 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.883 -20.710 -29.299 36.534 hybrid contribution 1.321 -0.290 0.791 1.567 sum -5.562 -21.001 -28.507 35.842 Atomic orbital electron populations 1.21732 0.93651 1.02864 1.02439 1.22570 0.95863 0.83534 1.00529 1.88008 1.21065 1.26797 1.95442 1.22662 0.81858 0.96011 1.01125 1.22192 0.97701 0.93771 0.93348 1.61920 1.60095 1.01584 1.02319 1.22428 0.96921 0.89390 0.99135 1.21610 1.01029 0.94900 0.81466 1.47373 1.68746 1.09950 1.10049 1.16015 0.78332 0.84585 0.80868 1.90921 1.57217 1.16892 1.84855 1.42313 1.72659 1.11887 1.04657 1.17138 1.02506 0.93920 0.87528 1.20680 0.99105 0.94802 0.94685 1.20225 1.04484 1.01134 0.94829 1.19839 0.94288 0.92690 0.87612 1.83961 1.67222 1.39517 1.23194 1.21883 1.34329 0.99482 0.93176 0.87555 1.26632 0.98599 0.97810 0.99213 1.70211 1.46315 1.16413 1.23149 0.84558 0.77670 0.78090 0.75699 1.18986 1.19870 1.17194 1.21108 1.07090 0.95236 1.00239 1.20780 0.95933 1.00956 0.92472 1.21956 1.01806 0.78268 0.98886 1.22550 0.97315 0.99360 0.89459 0.92638 0.89757 0.92606 0.92898 0.92811 0.91650 0.92356 0.89607 0.92513 0.87871 0.95273 0.90314 0.90072 0.74211 0.85651 0.87030 0.91955 0.84855 0.82435 0.88557 0.89552 0.94884 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.05 0.45 6.66 71.98 0.48 0.93 16 3 O -0.39 -5.12 10.21 -148.98 -1.52 -6.64 16 4 C 0.06 0.52 5.53 71.98 0.40 0.91 16 5 C 0.06 0.56 5.52 86.31 0.48 1.04 16 6 N -0.53 -6.96 4.60 -895.26 -4.12 -11.08 16 7 C 0.05 0.73 5.62 86.38 0.49 1.21 16 8 C 0.13 2.54 6.61 86.35 0.57 3.11 16 9 N -0.62 -13.03 3.01 -835.94 -2.52 -15.54 16 10 C 0.70 20.41 8.03 179.06 1.44 21.84 16 11 O -0.62 -23.93 13.57 -4.01 -0.05 -23.98 16 12 N -0.66 -17.45 5.25 -317.04 -1.67 -19.12 16 13 C 0.08 2.90 6.26 38.16 0.24 3.14 16 14 C -0.07 -2.96 8.64 22.38 0.19 -2.77 16 15 C -0.19 -8.80 9.99 22.38 0.22 -8.58 16 16 C 0.11 5.47 6.65 22.59 0.15 5.62 16 17 O -0.23 -14.26 9.76 -22.91 -0.22 -14.48 16 18 C -0.41 -24.03 9.48 67.91 0.64 -23.39 16 19 H 0.11 5.55 5.19 -2.91 -0.02 5.54 16 20 C -0.03 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -57.37 13.67 21.61 0.30 -57.07 16 22 Si 1.02 42.71 29.55 68.60 2.03 44.74 16 23 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 26 C -0.22 -9.32 9.16 22.37 0.20 -9.11 16 27 C -0.08 -2.74 9.96 22.38 0.22 -2.52 16 28 C 0.11 1.50 6.54 86.35 0.56 2.07 16 29 C 0.04 0.48 5.24 86.38 0.45 0.93 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.06 0.40 6.14 -2.39 -0.01 0.39 16 37 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 39 H 0.10 1.18 8.11 -2.39 -0.02 1.16 16 40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.08 1.84 7.04 -2.39 -0.02 1.83 16 42 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 43 H 0.42 7.41 6.35 -92.71 -0.59 6.82 16 44 H 0.13 5.11 6.50 -2.91 -0.02 5.09 16 45 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.13 5.60 5.62 -2.91 -0.02 5.58 16 48 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 49 H 0.10 0.92 5.73 -2.39 -0.01 0.90 16 50 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.11 0.92 5.77 -2.38 -0.01 0.91 16 Total: -1.00 -80.62 415.20 0.52 -80.09 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.35 Total: 30.16 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 7.95 Total: -7.08 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -8.01 Total: -102.81 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.80 Total: -45.11 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.62 0.52 -80.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075610502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.517 kcal (2) G-P(sol) polarization free energy of solvation -80.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds