Wall clock time and date at job start Tue Mar 31 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31129 * 126.55251 * 2 1 4 4 C 1.34497 * 105.61236 * 180.26039 * 3 2 1 5 5 C 1.50696 * 126.28358 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.88471 * 13.94113 * 5 4 3 7 7 C 1.54326 * 109.88710 * 252.74127 * 5 4 3 8 8 C 1.55144 * 103.01914 * 218.31184 * 7 5 4 9 9 C 1.54904 * 101.65162 * 35.65325 * 8 7 5 10 10 N 1.47440 * 109.89075 * 134.97513 * 5 4 3 11 11 C 1.46902 * 110.99737 * 356.14660 * 10 5 4 12 12 C 1.50703 * 109.47183 * 190.00217 * 11 10 5 13 13 C 1.38116 * 120.02742 * 259.72250 * 12 11 10 14 14 C 1.38382 * 120.05605 * 179.78940 * 13 12 11 15 15 Cl 1.73605 * 119.94662 * 180.23075 * 14 13 12 16 16 C 1.38431 * 120.11374 * 0.46439 * 14 13 12 17 17 C 1.38075 * 120.05380 * 359.79192 * 16 14 13 18 18 C 1.38857 * 120.02989 * 79.99900 * 12 11 10 19 19 O 1.35758 * 120.05420 * 359.97438 * 18 12 11 20 20 C 1.34824 * 116.99800 * 174.37521 * 19 18 12 21 21 H 1.08000 * 120.00428 * 5.06948 * 20 19 18 22 22 C 1.38651 * 120.00252 * 185.06781 * 20 19 18 23 23 N 1.31562 * 120.00196 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99863 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.46886 * 90.00142 * 24 22 20 26 26 H 1.48500 * 109.47261 * 210.00303 * 24 22 20 27 27 H 1.48499 * 109.47037 * 330.00468 * 24 22 20 28 28 N 1.29945 * 107.42416 * 359.97438 * 4 3 2 29 29 O 1.21298 * 110.25492 * 359.97438 * 28 4 3 30 30 H 1.08998 * 109.47418 * 179.71147 * 1 2 3 31 31 H 1.09006 * 109.46998 * 299.72235 * 1 2 3 32 32 H 1.09007 * 109.46485 * 59.71259 * 1 2 3 33 33 H 1.08999 * 110.70747 * 336.69540 * 7 5 4 34 34 H 1.09003 * 110.70194 * 99.92869 * 7 5 4 35 35 H 1.09004 * 110.98922 * 277.56021 * 8 7 5 36 36 H 1.09000 * 110.98816 * 153.74475 * 8 7 5 37 37 H 1.08996 * 110.37402 * 204.09788 * 9 8 7 38 38 H 1.09003 * 110.37521 * 81.75740 * 9 8 7 39 39 H 1.08997 * 109.47065 * 309.99661 * 11 10 5 40 40 H 1.08998 * 109.47224 * 69.99876 * 11 10 5 41 41 H 1.08005 * 119.96754 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.97221 * 179.76705 * 16 14 13 43 43 H 1.07997 * 120.02468 * 179.97438 * 17 16 14 44 44 H 0.97001 * 119.99604 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 -0.0059 5 6 4.8112 1.3885 -0.0088 6 1 4.5853 2.4251 0.2413 7 6 5.4803 1.3139 -1.3975 8 6 6.9918 1.2475 -1.0539 9 6 6.9810 0.4003 0.2429 10 7 5.7671 0.8339 0.9670 11 6 5.1709 -0.2834 1.7114 12 6 6.0741 -0.6630 2.8566 13 6 6.9133 -1.7540 2.7427 14 6 7.7460 -2.1004 3.7922 15 17 8.8041 -3.4688 3.6437 16 6 7.7334 -1.3606 4.9622 17 6 6.8925 -0.2722 5.0830 18 6 6.0592 0.0805 4.0292 19 8 5.2315 1.1503 4.1455 20 6 5.1809 1.7571 5.3485 21 1 5.8419 1.4400 6.1415 22 6 4.2803 2.7883 5.5675 23 7 4.2314 3.3807 6.7412 24 14 3.1365 3.3364 4.1961 25 1 1.8758 2.5543 4.2609 26 1 2.8315 4.7812 4.3536 27 1 3.7929 3.1093 2.8836 28 7 3.4644 -0.7243 -0.0086 29 8 2.3029 -1.0737 -0.0044 30 1 -0.3634 -1.0276 -0.0052 31 1 -0.3633 0.5095 0.8925 32 1 -0.3632 0.5183 -0.8875 33 1 5.1661 0.4156 -1.9290 34 1 5.2567 2.2067 -1.9815 35 1 7.3937 2.2432 -0.8665 36 1 7.5500 0.7451 -1.8439 37 1 7.8712 0.6053 0.8375 38 1 6.9204 -0.6611 0.0023 39 1 4.1980 0.0171 2.1003 40 1 5.0482 -1.1385 1.0467 41 1 6.9223 -2.3350 1.8322 42 1 8.3815 -1.6353 5.7812 43 1 6.8827 0.3044 5.9961 44 1 3.6010 4.1019 6.8944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076016943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:48 Heat of formation + Delta-G solvation = 65.569542 kcal Electronic energy + Delta-G solvation = -31347.632813 eV Core-core repulsion = 27101.990126 eV Total energy + Delta-G solvation = -4245.642688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.114 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.72971 -41.39330 -40.25806 -38.59279 -37.11608 -36.80414 -34.64347 -34.51007 -34.20099 -31.48032 -30.59480 -30.37437 -29.67569 -27.37404 -26.62126 -25.20654 -23.88157 -23.37725 -22.76877 -21.97188 -21.07798 -19.91839 -19.30878 -19.09105 -18.50152 -17.26195 -17.12591 -16.93258 -16.70731 -16.13624 -15.76029 -15.66620 -15.51395 -15.30964 -14.89179 -14.47281 -14.42747 -14.23553 -14.18024 -14.09694 -14.00011 -13.71038 -13.42528 -13.19627 -12.99606 -12.94717 -12.85012 -12.56550 -12.52085 -12.25507 -12.18212 -12.11116 -12.01374 -11.92056 -11.88526 -11.73029 -11.32731 -10.92412 -10.78631 -9.94319 -9.44071 -9.04640 -8.55718 -6.24942 0.09864 0.27702 0.38687 1.09099 1.24327 1.25095 1.27221 1.48717 1.88453 2.22204 2.48143 2.53113 2.79677 2.96456 3.03811 3.16428 3.49194 3.60701 3.72958 3.84076 3.90173 4.12183 4.13779 4.28642 4.32222 4.39314 4.44937 4.48147 4.56433 4.57177 4.58828 4.72239 4.76996 4.80690 4.93970 4.95273 5.00322 5.03726 5.08109 5.15932 5.21463 5.25075 5.42336 5.65405 5.67647 5.83586 5.94751 6.02129 6.79811 7.09733 7.54056 8.55355 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.006746 B = 0.005102 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4149.847892 B = 5486.557191 C = 7788.203620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.184 3.816 3 N -0.514 5.514 4 C 0.154 3.846 5 C 0.154 3.846 6 H 0.095 0.905 7 C -0.116 4.116 8 C -0.114 4.114 9 C 0.041 3.959 10 N -0.524 5.524 11 C 0.123 3.877 12 C -0.144 4.144 13 C -0.050 4.050 14 C -0.102 4.102 15 Cl -0.070 7.070 16 C -0.057 4.057 17 C -0.225 4.225 18 C 0.152 3.848 19 O -0.219 6.219 20 C -0.395 4.395 21 H 0.087 0.913 22 C 0.023 3.977 23 N -0.915 5.915 24 Si 0.955 3.045 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.263 1.263 28 N -0.390 5.390 29 O 0.070 5.930 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.124 0.876 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.948 -9.162 -18.231 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 N -0.249 5.249 4 C -0.120 4.120 5 C 0.045 3.955 6 H 0.113 0.887 7 C -0.156 4.156 8 C -0.152 4.152 9 C -0.086 4.086 10 N -0.249 5.249 11 C -0.004 4.004 12 C -0.146 4.146 13 C -0.069 4.069 14 C -0.129 4.129 15 Cl -0.042 7.042 16 C -0.076 4.076 17 C -0.244 4.244 18 C 0.100 3.900 19 O -0.125 6.125 20 C -0.471 4.471 21 H 0.105 0.895 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.779 3.221 25 H -0.200 1.200 26 H -0.192 1.192 27 H -0.188 1.188 28 N -0.101 5.101 29 O 0.013 5.987 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.095 0.905 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.142 0.858 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.205 -8.701 -17.902 19.941 hybrid contribution -0.770 -0.098 0.182 0.797 sum -1.975 -8.799 -17.720 19.883 Atomic orbital electron populations 1.20772 0.76399 1.07850 1.06790 1.29848 1.00532 0.79648 0.93543 1.71861 1.00568 1.30463 1.21982 1.26395 0.96062 0.88733 1.00784 1.21112 0.83496 0.96609 0.94316 0.88724 1.22790 0.95852 1.03748 0.93171 1.22708 0.94832 1.01311 0.96381 1.23176 0.92329 0.98449 0.94604 1.63887 1.05351 1.31872 1.23766 1.21069 0.94088 0.92604 0.92635 1.18959 1.03599 0.97730 0.94347 1.20629 0.93082 0.95035 0.98149 1.20459 1.00571 0.94881 0.97015 1.98307 1.64943 1.42841 1.98089 1.20902 0.97122 0.92799 0.96751 1.21224 1.01336 1.01496 1.00392 1.19375 0.89946 0.86574 0.94075 1.83622 1.57147 1.38210 1.33514 1.20747 1.21881 1.16556 0.87925 0.89515 1.25051 0.98315 0.95504 0.98789 1.69709 1.38012 1.24829 1.22923 0.85422 0.78750 0.77912 0.80013 1.19994 1.19170 1.18759 1.74703 0.98046 1.15304 1.22049 1.85244 1.11385 1.36262 1.65783 0.85637 0.87469 0.85608 0.91027 0.88157 0.89802 0.87576 0.90479 0.92750 0.94812 0.90484 0.83480 0.83574 0.85810 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.18 4.47 8.51 88.38 0.75 5.22 16 3 N -0.51 -16.39 11.55 -303.19 -3.50 -19.89 16 4 C 0.15 5.06 5.24 138.46 0.72 5.78 16 5 C 0.15 4.93 3.96 44.51 0.18 5.11 16 6 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 7 C -0.12 -2.61 6.46 31.78 0.21 -2.41 16 8 C -0.11 -2.32 7.08 31.98 0.23 -2.09 16 9 C 0.04 1.12 6.00 86.77 0.52 1.65 16 10 N -0.52 -18.48 5.15 -869.42 -4.48 -22.96 16 11 C 0.12 4.68 3.14 85.56 0.27 4.95 16 12 C -0.14 -5.72 4.94 -19.74 -0.10 -5.81 16 13 C -0.05 -1.65 9.23 22.27 0.21 -1.44 16 14 C -0.10 -3.31 6.32 22.35 0.14 -3.17 16 15 Cl -0.07 -1.88 28.95 -2.72 -0.08 -1.96 16 16 C -0.06 -2.01 9.82 22.28 0.22 -1.79 16 17 C -0.23 -9.76 9.17 22.39 0.21 -9.56 16 18 C 0.15 7.11 6.62 22.58 0.15 7.26 16 19 O -0.22 -11.91 7.82 -22.77 -0.18 -12.08 16 20 C -0.39 -23.06 9.95 67.92 0.68 -22.38 16 21 H 0.09 5.24 5.44 -2.91 -0.02 5.22 16 22 C 0.02 1.34 5.49 84.83 0.47 1.81 16 23 N -0.91 -54.44 13.96 21.61 0.30 -54.14 16 24 Si 0.96 47.24 28.62 68.60 1.96 49.20 16 25 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 H -0.26 -13.48 7.11 99.48 0.71 -12.78 16 28 N -0.39 -12.26 8.70 -60.33 -0.53 -12.79 16 29 O 0.07 1.91 11.31 74.83 0.85 2.76 16 30 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.13 0.90 8.14 -2.38 -0.02 0.89 16 33 H 0.07 1.58 7.84 -2.39 -0.02 1.57 16 34 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.39 7.62 -2.39 -0.02 1.37 16 39 H 0.03 1.52 6.54 -2.39 -0.02 1.50 16 40 H 0.08 2.70 5.60 -2.39 -0.01 2.69 16 41 H 0.15 4.08 8.03 -2.91 -0.02 4.06 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.12 5.78 5.64 -2.91 -0.02 5.77 16 44 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -71.84 378.05 0.98 -70.85 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.05 Total: 17.82 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 5.59 Total: -16.81 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -8.21 Total: -109.78 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.67 Total: -9.33 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.96 Total: 49.20 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.96 kcal Total: -71.84 0.98 -70.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076016943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.422 kcal (2) G-P(sol) polarization free energy of solvation -71.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds