Wall clock time and date at job start Tue Mar 31 2020 05:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31138 * 126.54799 * 2 1 4 4 C 1.34497 * 105.61205 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.28554 * 179.97438 * 4 3 2 6 6 H 1.08995 * 110.42595 * 347.31699 * 5 4 3 7 7 C 1.54905 * 110.37249 * 109.63212 * 5 4 3 8 8 C 1.55144 * 101.65479 * 155.89810 * 7 5 4 9 9 C 1.54321 * 103.01718 * 324.34706 * 8 7 5 10 10 N 1.47446 * 107.23403 * 22.28310 * 9 8 7 11 11 C 1.46899 * 110.99810 * 123.25605 * 10 9 8 12 12 C 1.50700 * 109.46890 * 69.87515 * 11 10 9 13 13 C 1.38112 * 120.02674 * 260.27110 * 12 11 10 14 14 C 1.38391 * 120.05309 * 180.31959 * 13 12 11 15 15 Cl 1.73606 * 119.94546 * 179.70313 * 14 13 12 16 16 C 1.38428 * 120.11387 * 359.68398 * 14 13 12 17 17 C 1.38065 * 120.05675 * 0.02562 * 16 14 13 18 18 C 1.38859 * 120.02863 * 79.99886 * 12 11 10 19 19 O 1.35759 * 120.05470 * 359.97438 * 18 12 11 20 20 C 1.34825 * 116.99575 * 185.32474 * 19 18 12 21 21 H 1.08000 * 120.00170 * 354.86450 * 20 19 18 22 22 C 1.38649 * 119.99796 * 175.14816 * 20 19 18 23 23 N 1.31560 * 119.99924 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00084 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47074 * 60.00085 * 24 22 20 26 26 H 1.48498 * 109.46984 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47273 * 299.99838 * 24 22 20 28 28 N 1.29944 * 107.42473 * 0.25078 * 4 3 2 29 29 O 1.21302 * 110.25360 * 359.57478 * 28 4 3 30 30 H 1.08996 * 109.47631 * 89.99214 * 1 2 3 31 31 H 1.09002 * 109.46994 * 209.99629 * 1 2 3 32 32 H 1.08999 * 109.47094 * 329.99073 * 1 2 3 33 33 H 1.08997 * 110.99138 * 37.80828 * 7 5 4 34 34 H 1.08994 * 110.99169 * 273.98855 * 7 5 4 35 35 H 1.08995 * 110.70820 * 205.96466 * 8 7 5 36 36 H 1.08998 * 110.85198 * 82.79886 * 8 7 5 37 37 H 1.08997 * 109.88813 * 262.87202 * 9 8 7 38 38 H 1.08998 * 109.88631 * 141.68831 * 9 8 7 39 39 H 1.09000 * 109.47180 * 309.87705 * 11 10 9 40 40 H 1.08997 * 109.47051 * 189.87223 * 11 10 9 41 41 H 1.07998 * 119.97447 * 0.02562 * 13 12 11 42 42 H 1.08002 * 119.97422 * 179.97438 * 16 14 13 43 43 H 1.08003 * 120.03273 * 180.02562 * 17 16 14 44 44 H 0.97010 * 119.99865 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5729 0.0006 5 6 4.8111 1.3888 0.0003 6 1 4.5914 2.4324 -0.2247 7 6 5.5283 1.2715 1.3682 8 6 6.9953 1.5962 0.9818 9 6 7.1332 0.9658 -0.4200 10 7 5.7745 0.8428 -0.9793 11 6 5.6699 1.5425 -2.2667 12 6 6.4659 0.7994 -3.3084 13 6 7.7298 1.2360 -3.6540 14 6 8.4586 0.5579 -4.6153 15 17 10.0439 1.1137 -5.0531 16 6 7.9259 -0.5633 -5.2281 17 6 6.6653 -1.0074 -4.8819 18 6 5.9316 -0.3283 -3.9175 19 8 4.6919 -0.7630 -3.5751 20 6 4.2777 -1.9238 -4.1219 21 1 4.8881 -2.4204 -4.8616 22 6 3.0654 -2.4769 -3.7388 23 7 2.3195 -1.8693 -2.8415 24 14 2.4911 -4.0847 -4.4968 25 1 3.4811 -5.1519 -4.2030 26 1 1.1742 -4.4602 -3.9225 27 1 2.3619 -3.9206 -5.9670 28 7 3.4645 -0.7241 -0.0045 29 8 2.3029 -1.0735 0.0003 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 5.4444 0.2608 1.7677 34 1 5.1401 2.0031 2.0767 35 1 7.6900 1.1333 1.6826 36 1 7.1555 2.6735 0.9374 37 1 7.5919 -0.0197 -0.3399 38 1 7.7399 1.6088 -1.0576 39 1 6.0620 2.5543 -2.1633 40 1 4.6245 1.5874 -2.5719 41 1 8.1478 2.1102 -3.1771 42 1 8.4965 -1.0906 -5.9783 43 1 6.2502 -1.8823 -5.3599 44 1 1.4711 -2.2561 -2.5737 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076016945.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:52 Heat of formation + Delta-G solvation = 51.236970 kcal Electronic energy + Delta-G solvation = -31489.495956 eV Core-core repulsion = 27243.231761 eV Total energy + Delta-G solvation = -4246.264195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.114 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -46.13401 -41.13817 -39.92640 -38.37193 -37.00166 -36.40665 -34.41656 -34.17505 -33.86571 -31.34558 -30.27973 -30.21958 -29.32432 -27.29045 -26.55815 -24.71974 -23.62433 -23.38647 -22.68233 -21.63665 -20.87375 -19.82409 -18.70969 -18.61357 -18.27695 -17.21903 -16.91026 -16.82731 -16.40488 -16.20158 -15.54771 -15.45430 -15.27284 -14.88434 -14.73973 -14.45721 -14.09855 -14.03194 -13.95173 -13.81574 -13.62043 -13.56543 -13.43755 -12.89260 -12.81029 -12.75598 -12.70868 -12.50320 -12.38685 -12.16905 -12.06821 -11.93679 -11.84501 -11.77145 -11.74571 -11.59214 -11.13137 -10.64183 -10.41521 -9.83811 -9.23508 -8.85180 -8.33700 -5.97755 0.39312 0.53258 0.68113 1.35512 1.37032 1.44370 1.48024 1.53305 2.20212 2.37162 2.59848 2.83135 3.14915 3.28225 3.48188 3.53324 3.69009 3.75337 3.91533 3.93818 4.02271 4.16600 4.24031 4.37324 4.45503 4.53698 4.55880 4.59989 4.68250 4.71884 4.73707 4.86139 4.87290 4.93486 4.97562 5.05437 5.09131 5.15223 5.21415 5.29409 5.36688 5.39285 5.44981 5.63353 5.96027 6.02477 6.08231 6.17760 7.08006 7.64903 7.84409 8.83744 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008052 B = 0.004816 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.730244 B = 5812.897565 C = 8751.578481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.171 3.829 3 N -0.516 5.516 4 C 0.162 3.838 5 C 0.165 3.835 6 H 0.083 0.917 7 C -0.108 4.108 8 C -0.123 4.123 9 C 0.047 3.953 10 N -0.530 5.530 11 C 0.128 3.872 12 C -0.150 4.150 13 C -0.049 4.049 14 C -0.117 4.117 15 Cl -0.077 7.077 16 C -0.057 4.057 17 C -0.241 4.241 18 C 0.142 3.858 19 O -0.187 6.187 20 C -0.426 4.426 21 H 0.088 0.912 22 C 0.002 3.998 23 N -0.867 5.867 24 Si 1.001 2.999 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.266 1.266 28 N -0.361 5.361 29 O 0.083 5.917 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.124 0.876 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 7.025 6.651 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 N -0.252 5.252 4 C -0.112 4.112 5 C 0.055 3.945 6 H 0.100 0.900 7 C -0.147 4.147 8 C -0.161 4.161 9 C -0.080 4.080 10 N -0.255 5.255 11 C 0.001 3.999 12 C -0.152 4.152 13 C -0.068 4.068 14 C -0.144 4.144 15 Cl -0.048 7.048 16 C -0.076 4.076 17 C -0.261 4.261 18 C 0.088 3.912 19 O -0.091 6.091 20 C -0.502 4.502 21 H 0.106 0.894 22 C -0.201 4.201 23 N -0.501 5.501 24 Si 0.823 3.177 25 H -0.197 1.197 26 H -0.192 1.192 27 H -0.191 1.191 28 N -0.066 5.066 29 O 0.021 5.979 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.142 0.858 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.654 6.532 6.776 10.096 hybrid contribution -0.366 -0.440 -0.935 1.096 sum 3.288 6.092 5.841 9.057 Atomic orbital electron populations 1.20530 0.77794 1.07047 1.05713 1.29398 1.00202 0.80397 0.94857 1.71637 1.00541 1.30146 1.22841 1.25632 0.94852 0.88483 1.02220 1.20631 0.85669 0.93826 0.94361 0.89957 1.22683 0.95707 1.02462 0.93874 1.22768 0.95387 1.02210 0.95759 1.22820 0.88746 1.00585 0.95879 1.63008 1.04640 1.55964 1.01885 1.20617 0.97700 0.93932 0.87623 1.18877 0.96109 0.98076 1.02125 1.20645 0.91469 0.99215 0.95464 1.20389 0.89021 1.00435 1.04585 1.98292 1.24556 1.89349 1.92639 1.20846 0.93923 0.94484 0.98304 1.21149 0.97006 1.04513 1.03441 1.19696 0.85779 0.93337 0.92377 1.83997 1.25434 1.37346 1.62297 1.21544 1.05714 0.99037 1.23858 0.89431 1.26121 0.95257 1.02006 0.96739 1.70144 1.11773 1.39345 1.28875 0.84910 0.77971 0.76561 0.78308 1.19726 1.19201 1.19055 1.74503 0.97408 1.16304 1.18335 1.85246 1.11621 1.36224 1.64765 0.88442 0.86621 0.86195 0.92289 0.88110 0.88673 0.88715 0.92491 0.91006 0.91654 0.94348 0.83207 0.84035 0.85805 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.22 10.51 71.23 0.75 -0.47 16 2 C 0.17 6.29 8.51 88.38 0.75 7.04 16 3 N -0.52 -20.66 11.55 -303.19 -3.50 -24.17 16 4 C 0.16 6.84 7.12 138.46 0.99 7.82 16 5 C 0.17 5.78 2.94 44.64 0.13 5.91 16 6 H 0.08 2.70 7.81 -2.39 -0.02 2.68 16 7 C -0.11 -2.90 6.48 31.98 0.21 -2.70 16 8 C -0.12 -2.66 6.94 31.78 0.22 -2.44 16 9 C 0.05 1.37 6.39 86.65 0.55 1.93 16 10 N -0.53 -20.04 4.79 -869.53 -4.16 -24.20 16 11 C 0.13 4.98 4.37 85.56 0.37 5.35 16 12 C -0.15 -6.11 4.96 -19.75 -0.10 -6.21 16 13 C -0.05 -1.64 8.60 22.28 0.19 -1.44 16 14 C -0.12 -3.90 6.32 22.35 0.14 -3.76 16 15 Cl -0.08 -2.11 28.95 -2.72 -0.08 -2.18 16 16 C -0.06 -2.04 9.82 22.27 0.22 -1.83 16 17 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 18 C 0.14 6.91 6.62 22.58 0.15 7.06 16 19 O -0.19 -10.76 9.00 -22.79 -0.21 -10.96 16 20 C -0.43 -24.15 9.49 67.92 0.64 -23.51 16 21 H 0.09 4.71 5.20 -2.91 -0.02 4.70 16 22 C 0.00 0.08 5.49 84.83 0.47 0.55 16 23 N -0.87 -48.30 13.10 21.61 0.28 -48.01 16 24 Si 1.00 42.46 29.55 68.60 2.03 44.48 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 28 N -0.36 -17.02 12.16 -60.32 -0.73 -17.75 16 29 O 0.08 3.63 10.73 74.85 0.80 4.44 16 30 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.87 6.18 -2.39 -0.01 1.85 16 39 H 0.07 2.04 7.83 -2.39 -0.02 2.02 16 40 H 0.04 1.80 7.79 -2.39 -0.02 1.78 16 41 H 0.15 4.04 7.63 -2.91 -0.02 4.02 16 42 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 44 H 0.27 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -72.25 384.38 1.37 -70.88 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.05 Total: 24.55 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.89 Total: -17.07 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -8.11 Total: -114.13 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.60 Total: -6.52 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.08 Total: -2.18 kcal Total: -72.25 1.37 -70.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076016945.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.113 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds