Wall clock time and date at job start Tue Mar 31 2020 05:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.46986 * 2 1 4 4 C 1.46496 * 120.00628 * 270.00225 * 3 2 1 5 5 C 1.50699 * 109.47598 * 270.00465 * 4 3 2 6 6 H 1.08005 * 119.99628 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00538 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47013 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46808 * 120.00120 * 9 7 5 12 12 H 1.48501 * 109.46891 * 240.00253 * 9 7 5 13 13 C 1.34774 * 119.99828 * 90.00387 * 3 2 1 14 14 O 1.21279 * 120.00472 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00020 * 0.02562 * 13 3 2 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 3 17 17 C 1.34992 * 126.03238 * 124.99957 * 16 15 13 18 18 C 1.35349 * 107.73359 * 179.97438 * 17 16 15 19 19 I 2.09501 * 126.04446 * 179.97438 * 18 17 16 20 20 C 1.39903 * 107.91687 * 359.97438 * 18 17 16 21 21 N 1.30842 * 108.20137 * 359.74427 * 20 18 17 22 22 H 1.08996 * 109.46936 * 299.99297 * 1 2 3 23 23 H 1.08997 * 109.47532 * 59.99922 * 1 2 3 24 24 H 1.09007 * 109.46741 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46898 * 240.00405 * 2 1 3 26 26 H 1.08993 * 109.47182 * 120.00744 * 2 1 3 27 27 H 1.09008 * 109.47096 * 29.99824 * 4 3 2 28 28 H 1.09003 * 109.47776 * 149.99700 * 4 3 2 29 29 H 0.97002 * 119.99965 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46953 * 299.99667 * 15 13 3 31 31 H 1.09000 * 109.47318 * 59.99264 * 15 13 3 32 32 H 1.07999 * 126.13574 * 359.95632 * 17 16 15 33 33 H 1.07994 * 125.90002 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3899 -2.8780 8 7 3.3490 3.1261 -3.6179 9 14 5.9134 2.0970 -3.4170 10 1 6.6010 1.2416 -2.4166 11 1 5.9212 1.4175 -4.7374 12 1 6.6203 3.3984 -3.5257 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1597 1.1673 15 6 1.9925 1.3058 2.4723 16 7 2.3103 2.2031 3.5858 17 6 1.4810 2.5387 4.5967 18 6 2.1499 3.3841 5.4152 19 53 1.3986 4.2585 7.1646 20 6 3.4317 3.5708 4.8867 21 7 3.5306 2.8588 3.7934 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 1.5816 1.6878 -2.0284 28 1 2.0954 3.1412 -1.1383 29 1 3.6750 3.5167 -4.4438 30 1 0.9446 1.0112 2.5303 31 1 2.6229 0.4185 2.5298 32 1 0.4658 2.1947 4.7286 33 1 4.2070 4.1921 5.3100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077962989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:27 Heat of formation + Delta-G solvation = 63.922901 kcal Electronic energy + Delta-G solvation = -18295.289876 eV Core-core repulsion = 15217.722522 eV Total energy + Delta-G solvation = -3077.567354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 363.018 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.31017 -39.08014 -35.46486 -33.59380 -32.75356 -31.44370 -30.24579 -29.05473 -27.36884 -26.02785 -23.17675 -22.89505 -21.13152 -20.70209 -18.55792 -17.20506 -16.79712 -16.39140 -15.40535 -15.14150 -14.55446 -14.40357 -13.85548 -13.55521 -13.21730 -13.08577 -12.97553 -12.47602 -12.13968 -12.01272 -11.68472 -11.27878 -10.97846 -10.85171 -10.68138 -10.61658 -10.43554 -10.17888 -9.87452 -9.73289 -9.65592 -9.01650 -8.49053 -8.47082 -7.80657 -6.08740 -4.13476 1.14736 1.77124 2.50406 2.67031 3.15026 3.27931 3.36202 3.40416 3.71378 4.40408 4.54610 4.60599 4.77453 4.94511 5.04661 5.21266 5.26372 5.44903 5.48285 5.58785 5.62382 5.86283 6.09797 6.32936 6.41839 6.72702 6.96851 7.34524 7.42882 7.63307 7.87229 8.16977 8.23363 8.79868 8.94934 9.51909 10.99506 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.022902 B = 0.002570 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.303792 B =10891.200944 C =11644.570106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.594 5.594 4 C 0.249 3.751 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.492 3.508 14 O -0.510 6.510 15 C 0.109 3.891 16 N -0.344 5.344 17 C 0.095 3.905 18 C -0.250 4.250 19 I -0.021 7.021 20 C 0.067 3.933 21 N -0.244 5.244 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.178 0.822 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 -3.973 23.034 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.130 3.870 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.276 3.724 14 O -0.384 6.384 15 C -0.016 4.016 16 N -0.125 5.125 17 C -0.055 4.055 18 C -0.402 4.402 19 I 0.124 6.876 20 C -0.122 4.122 21 N -0.064 5.064 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.195 0.805 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.451 -3.112 22.883 24.591 hybrid contribution 0.782 -0.488 -0.871 1.269 sum -7.669 -3.601 22.012 23.586 Atomic orbital electron populations 1.22244 0.96574 1.01663 1.02395 1.21493 0.93615 0.84098 1.03023 1.48258 1.63801 1.13268 1.07402 1.19301 0.96481 0.93577 0.77651 1.21451 0.96828 1.32058 1.06254 0.92363 1.24932 0.97931 0.94834 0.96377 1.69937 1.35660 1.33378 1.14357 0.86431 0.84544 0.78132 0.78262 1.19764 1.20951 1.20824 1.20062 0.80125 0.87514 0.84719 1.90772 1.43855 1.17412 1.86350 1.21832 1.03430 0.91851 0.84515 1.48267 1.09834 1.35952 1.18431 1.22357 0.97066 0.97358 0.88752 1.24218 0.98874 1.12848 1.04266 1.96522 1.85612 1.81077 1.24363 1.23797 0.96201 0.99216 0.92988 1.77742 1.01771 1.10554 1.16311 0.93285 0.91752 0.91861 0.89417 0.91852 0.94788 0.93922 0.92727 0.86233 0.86928 0.80523 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 37.16 0.38 -1.55 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.76 2.46 -175.06 -0.43 -12.19 16 4 C 0.25 6.32 5.16 -5.20 -0.03 6.29 16 5 C -0.53 -14.79 9.39 -34.44 -0.32 -15.11 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.49 9.79 7.70 -10.98 -0.08 9.70 16 14 O -0.51 -12.91 15.30 5.56 0.09 -12.82 16 15 C 0.11 1.49 5.54 -5.19 -0.03 1.46 16 16 N -0.34 -5.22 3.39 -62.53 -0.21 -5.43 16 17 C 0.10 1.17 11.41 -17.19 -0.20 0.97 16 18 C -0.25 -3.16 6.50 -39.99 -0.26 -3.42 16 19 I -0.02 -0.21 40.67 -73.02 -2.97 -3.18 16 20 C 0.07 0.98 12.00 -17.35 -0.21 0.77 16 21 N -0.24 -4.33 11.66 30.63 0.36 -3.97 16 22 H 0.05 0.50 7.22 -51.93 -0.38 0.12 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 26 H 0.06 0.69 6.44 -51.93 -0.33 0.35 16 27 H 0.03 0.87 8.07 -51.92 -0.42 0.45 16 28 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.12 1.12 7.12 -51.93 -0.37 0.75 16 31 H 0.11 1.32 7.40 -51.93 -0.38 0.93 16 32 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -34.98 317.21 -7.47 -42.44 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.92 Total: -3.00 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.87 Total: 2.18 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.45 Total: -47.31 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 53 Polarization: -0.21 SS G_CDS: -2.97 Total: -3.18 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.98 -7.47 -42.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077962989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.365 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds