Wall clock time and date at job start Tue Mar 31 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00290 * 2 1 4 4 H 1.48509 * 109.46743 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47094 * 119.99728 * 3 2 1 6 6 H 1.48493 * 109.47555 * 240.00151 * 3 2 1 7 7 C 1.37882 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99951 * 182.17216 * 7 2 1 9 9 C 1.50701 * 120.00411 * 2.17284 * 7 2 1 10 10 H 1.09004 * 109.46616 * 28.82088 * 9 7 2 11 11 N 1.46500 * 109.47192 * 148.81932 * 9 7 2 12 12 C 1.34775 * 120.00138 * 274.99781 * 11 9 7 13 13 O 1.21588 * 119.99622 * 0.02562 * 12 11 9 14 14 N 1.34778 * 119.99917 * 179.97438 * 12 11 9 15 15 C 1.39999 * 119.99734 * 184.86067 * 14 12 11 16 16 C 1.38820 * 120.06849 * 19.18268 * 15 14 12 17 17 C 1.38236 * 119.92966 * 179.72137 * 16 15 14 18 18 Cl 1.73600 * 119.97010 * 180.27459 * 17 16 15 19 19 C 1.38411 * 120.06621 * 0.55503 * 17 16 15 20 20 C 1.38246 * 120.12938 * 359.72188 * 19 17 16 21 21 C 1.38237 * 120.07458 * 0.02562 * 20 19 17 22 22 Cl 1.73601 * 120.03457 * 179.97438 * 21 20 19 23 23 C 1.50701 * 109.46948 * 268.82208 * 9 7 2 24 24 C 1.38236 * 119.99953 * 287.09006 * 23 9 7 25 25 C 1.38235 * 119.99647 * 179.78718 * 24 23 9 26 26 C 1.38231 * 120.00430 * 0.44652 * 25 24 23 27 27 C 1.38233 * 119.99835 * 359.80785 * 26 25 24 28 28 C 1.38237 * 119.99834 * 107.36645 * 23 9 7 29 29 H 0.97005 * 119.99987 * 174.56446 * 1 2 3 30 30 H 0.97001 * 119.99722 * 95.00469 * 11 9 7 31 31 H 0.96996 * 120.00165 * 4.86707 * 14 12 11 32 32 H 1.08000 * 120.04119 * 359.97438 * 16 15 14 33 33 H 1.07997 * 119.93593 * 179.69918 * 19 17 16 34 34 H 1.08005 * 119.96212 * 179.97438 * 20 19 17 35 35 H 1.08001 * 120.00177 * 0.02562 * 24 23 9 36 36 H 1.08007 * 119.99606 * 180.27246 * 25 24 23 37 37 H 1.07996 * 120.00511 * 179.83268 * 26 25 24 38 38 H 1.07994 * 120.00357 * 180.02562 * 27 26 25 39 39 H 1.07998 * 120.00098 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2840 2.7464 0.0006 5 1 3.1028 1.6963 1.2126 6 1 3.1028 1.6964 -1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0839 -1.1945 0.0349 9 6 1.2518 -2.4988 -0.0506 10 1 0.3071 -2.3533 -0.5746 11 7 2.0544 -3.4987 -0.7593 12 6 2.0087 -3.5694 -2.1044 13 8 1.3016 -2.8030 -2.7297 14 7 2.7475 -4.4890 -2.7563 15 6 2.7792 -4.4971 -4.1559 16 6 2.4013 -3.3661 -4.8668 17 6 2.4393 -3.3753 -6.2486 18 17 1.9738 -1.9593 -7.1383 19 6 2.8426 -4.5144 -6.9236 20 6 3.2140 -5.6440 -6.2185 21 6 3.1831 -5.6393 -4.8365 22 17 3.6491 -7.0586 -3.9520 23 6 0.9796 -2.9758 1.3528 24 6 2.0099 -3.4826 2.1225 25 6 1.7609 -3.9161 3.4114 26 6 0.4801 -3.8513 3.9272 27 6 -0.5511 -3.3493 3.1556 28 6 -0.3015 -2.9118 1.8682 29 1 -0.4850 -0.8363 -0.0796 30 1 2.6187 -4.1099 -0.2603 31 1 3.2570 -5.1453 -2.2559 32 1 2.0819 -2.4786 -4.3408 33 1 2.8668 -4.5208 -8.0033 34 1 3.5279 -6.5315 -6.7480 35 1 3.0100 -3.5364 1.7184 36 1 2.5668 -4.3080 4.0143 37 1 0.2851 -4.1924 4.9331 38 1 -1.5517 -3.2983 3.5586 39 1 -1.1072 -2.5195 1.2654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079064613.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:22 Heat of formation + Delta-G solvation = 14.610254 kcal Electronic energy + Delta-G solvation = -27000.201227 eV Core-core repulsion = 22959.506187 eV Total energy + Delta-G solvation = -4040.695040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.049 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.55394 -39.03566 -38.31409 -36.86638 -36.26560 -35.13536 -34.33325 -32.61985 -30.76704 -30.48289 -30.28618 -29.22656 -26.26311 -23.72792 -23.13908 -22.56105 -21.99817 -20.77363 -20.22477 -18.39680 -17.92409 -17.15824 -16.59301 -16.16812 -15.55466 -15.27399 -14.98728 -14.59100 -14.47392 -14.09718 -13.85480 -13.74134 -13.72291 -13.26504 -12.99528 -12.71270 -12.50967 -12.50484 -12.23839 -12.08979 -11.91084 -11.26240 -11.13890 -10.97264 -10.90585 -10.86069 -10.54992 -10.42974 -10.28699 -10.09410 -9.55350 -9.40126 -8.75676 -8.60157 -8.36247 -8.33778 -8.04596 -7.73363 -6.49320 -4.25021 0.87129 1.16429 1.86934 1.98768 1.99696 2.13498 2.89796 3.30222 3.38813 3.42319 3.59053 3.80502 4.37587 4.41864 4.56725 4.69295 4.92906 5.11549 5.16396 5.22124 5.42754 5.46114 5.58938 5.61064 5.79484 5.85775 5.98904 6.11208 6.14334 6.18118 6.34630 6.45513 6.60671 6.75016 6.83289 7.00961 7.03669 7.13210 7.25850 7.46858 7.61741 7.83649 8.23763 8.40758 8.65690 9.03507 9.44675 10.85810 Molecular weight = 364.05amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003416 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.455951 B = 8194.723828 C =10514.223106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.034 3.966 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.591 4.591 8 H 0.055 0.945 9 C 0.297 3.703 10 H 0.066 0.934 11 N -0.716 5.716 12 C 0.700 3.300 13 O -0.556 6.556 14 N -0.685 5.685 15 C 0.213 3.787 16 C -0.126 4.126 17 C -0.005 4.005 18 Cl -0.061 7.061 19 C -0.136 4.136 20 C -0.075 4.075 21 C -0.085 4.085 22 Cl -0.067 7.067 23 C -0.044 4.044 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.148 4.148 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.271 0.729 30 H 0.380 0.620 31 H 0.406 0.594 32 H 0.185 0.815 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 -12.827 -6.632 15.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.174 4.174 3 Si 0.895 3.105 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.629 4.629 8 H 0.074 0.926 9 C 0.195 3.805 10 H 0.084 0.916 11 N -0.368 5.368 12 C 0.400 3.600 13 O -0.432 6.432 14 N -0.331 5.331 15 C 0.113 3.887 16 C -0.148 4.148 17 C -0.032 4.032 18 Cl -0.031 7.031 19 C -0.156 4.156 20 C -0.094 4.094 21 C -0.115 4.115 22 Cl -0.038 7.038 23 C -0.046 4.046 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.166 4.166 27 C -0.137 4.137 28 C -0.134 4.134 29 H 0.084 0.916 30 H 0.213 0.787 31 H 0.242 0.758 32 H 0.202 0.798 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.424 -10.399 -6.959 13.638 hybrid contribution 0.866 -2.272 0.583 2.501 sum 6.291 -12.672 -6.376 15.518 Atomic orbital electron populations 1.70805 1.06833 1.31338 1.43347 1.25802 0.96388 1.02568 0.92606 0.83570 0.75075 0.75298 0.76594 1.20514 1.21366 1.21222 1.22010 0.94427 0.90537 1.55927 0.92645 1.17840 0.92971 0.85355 0.84324 0.91644 1.45894 1.48907 1.38404 1.03594 1.15940 0.80414 0.80686 0.82928 1.90818 1.43503 1.43406 1.65522 1.42956 1.50627 1.35662 1.03888 1.17136 0.96916 0.91723 0.82905 1.21862 1.00841 1.00106 0.91961 1.20857 1.00997 0.89180 0.92204 1.98382 1.90531 1.39322 1.74915 1.20876 1.02795 0.91475 1.00503 1.20679 0.99179 0.98744 0.90821 1.20606 1.10551 0.87706 0.92644 1.98351 1.90956 1.38617 1.75920 1.20661 0.92426 0.92571 0.98920 1.20811 0.98549 1.00302 0.94239 1.20980 0.96463 1.01134 0.95691 1.20885 0.93439 1.02911 0.99360 1.21013 0.98581 0.99584 0.94550 1.20997 0.96670 0.99891 0.95812 0.91638 0.78681 0.75781 0.79829 0.84333 0.84006 0.87028 0.87143 0.87223 0.86981 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.63 55.43 0.76 -24.75 16 2 C 0.03 0.93 5.46 -17.82 -0.10 0.84 16 3 Si 1.07 24.75 29.90 -169.99 -5.08 19.66 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.59 -15.41 8.49 -34.44 -0.29 -15.71 16 8 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 9 C 0.30 6.85 2.00 -70.23 -0.14 6.71 16 10 H 0.07 1.73 5.68 -51.93 -0.30 1.44 16 11 N -0.72 -13.85 5.02 -60.96 -0.31 -14.16 16 12 C 0.70 13.83 8.38 -86.92 -0.73 13.11 16 13 O -0.56 -13.23 12.86 5.29 0.07 -13.16 16 14 N -0.69 -10.60 5.26 -14.20 -0.07 -10.68 16 15 C 0.21 3.23 6.51 -83.65 -0.54 2.69 16 16 C -0.13 -2.09 8.58 -39.37 -0.34 -2.43 16 17 C 0.00 -0.07 6.32 -39.52 -0.25 -0.32 16 18 Cl -0.06 -0.83 28.95 -51.86 -1.50 -2.33 16 19 C -0.14 -1.51 9.83 -39.51 -0.39 -1.90 16 20 C -0.07 -0.79 9.82 -39.58 -0.39 -1.17 16 21 C -0.08 -1.05 6.34 -39.32 -0.25 -1.30 16 22 Cl -0.07 -0.72 27.71 -51.86 -1.44 -2.15 16 23 C -0.04 -0.92 4.93 -104.62 -0.52 -1.44 16 24 C -0.12 -2.19 8.90 -39.58 -0.35 -2.55 16 25 C -0.12 -2.01 10.05 -39.59 -0.40 -2.40 16 26 C -0.15 -2.34 10.05 -39.59 -0.40 -2.74 16 27 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 28 C -0.11 -2.32 9.54 -39.58 -0.38 -2.69 16 29 H 0.27 7.71 5.85 -40.82 -0.24 7.48 16 30 H 0.38 6.08 7.32 -40.82 -0.30 5.78 16 31 H 0.41 5.12 7.64 -40.82 -0.31 4.81 16 32 H 0.18 3.68 5.36 -52.49 -0.28 3.40 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.11 1.87 7.37 -52.49 -0.39 1.49 16 36 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 37 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.12 2.43 7.42 -52.49 -0.39 2.04 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -30.39 364.62 -11.46 -41.85 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -3.52 Total: 13.99 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -5.86 Total: -13.76 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.37 Total: -49.59 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.66 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -2.94 Total: -4.48 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.39 -11.46 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079064613.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.457 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds