Wall clock time and date at job start Tue Mar 31 2020 05:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48505 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46932 * 299.99338 * 3 2 1 6 6 H 1.48495 * 109.47460 * 59.99770 * 3 2 1 7 7 C 1.37878 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99762 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46935 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.46883 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54354 * 68.37588 * 11 10 9 13 13 O 1.42101 * 110.54189 * 291.62381 * 11 10 9 14 14 N 1.65606 * 104.44655 * 179.97438 * 11 10 9 15 15 C 1.46503 * 119.99730 * 65.00197 * 14 11 10 16 16 H 1.08994 * 110.34645 * 337.12146 * 15 14 11 17 17 C 1.54340 * 110.29731 * 214.99735 * 15 14 11 18 18 C 1.54347 * 102.39927 * 267.43008 * 17 15 14 19 19 C 1.51370 * 105.25432 * 333.59962 * 18 17 15 20 20 C 1.38493 * 109.62676 * 17.23466 * 19 18 17 21 21 C 1.38469 * 119.84223 * 179.97438 * 20 19 18 22 22 C 1.38141 * 120.25813 * 359.94392 * 21 20 19 23 23 C 1.38296 * 119.93545 * 0.02599 * 22 21 20 24 24 Cl 1.73608 * 120.05189 * 179.97438 * 23 22 21 25 25 C 1.38354 * 130.55149 * 197.12863 * 19 18 17 26 26 Cl 1.73598 * 119.83908 * 0.08692 * 25 19 18 27 27 H 0.96996 * 119.99499 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47126 * 59.99993 * 9 7 2 29 29 H 1.09002 * 109.47291 * 299.99746 * 9 7 2 30 30 H 1.08997 * 109.47071 * 60.00141 * 10 9 7 31 31 H 1.09002 * 109.47072 * 300.00062 * 10 9 7 32 32 H 0.96998 * 119.99873 * 244.99572 * 14 11 10 33 33 H 1.09005 * 110.81891 * 149.20700 * 17 15 14 34 34 H 1.08993 * 110.82844 * 25.66042 * 17 15 14 35 35 H 1.09002 * 110.30226 * 92.57403 * 18 17 15 36 36 H 1.08997 * 110.30441 * 214.62963 * 18 17 15 37 37 H 1.07999 * 119.87096 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.03212 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6647 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5228 1.1498 16 1 3.4619 -5.5863 1.7059 17 6 4.8323 -6.9312 0.6809 18 6 4.7803 -8.4709 0.7746 19 6 3.7437 -8.7706 1.8362 20 6 2.9604 -7.6488 2.0512 21 6 1.9393 -7.6902 2.9855 22 6 1.6984 -8.8460 3.7027 23 6 2.4797 -9.9668 3.4881 24 17 2.1801 -11.4207 4.3883 25 6 3.5009 -9.9274 2.5552 26 17 4.4819 -11.3340 2.2855 27 1 -0.4849 0.8401 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8905 31 1 2.8720 -3.6043 -0.8895 32 1 2.6176 -6.9858 -0.7608 33 1 5.5938 -6.5279 1.3484 34 1 5.0073 -6.6113 -0.3463 35 1 4.4772 -8.8981 -0.1813 36 1 5.7519 -8.8647 1.0731 37 1 1.3285 -6.8156 3.1539 38 1 0.9008 -8.8743 4.4303 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079097926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:40 Heat of formation + Delta-G solvation = -74.394301 kcal Electronic energy + Delta-G solvation = -25390.463187 eV Core-core repulsion = 21410.945387 eV Total energy + Delta-G solvation = -3979.517800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 363.025 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69971 -37.59844 -36.78141 -36.64492 -36.05366 -35.52044 -33.95712 -33.31569 -31.23061 -30.82991 -29.28350 -26.74830 -25.66993 -23.18407 -21.76812 -21.58769 -21.22400 -19.15208 -17.68247 -17.46747 -16.60773 -16.28820 -16.06839 -15.81137 -15.39027 -15.20125 -14.64235 -14.51865 -14.26744 -14.01330 -13.90541 -13.44176 -12.63950 -12.60107 -12.48617 -12.21072 -12.08801 -11.86187 -11.81628 -11.76981 -11.67441 -11.58889 -11.38053 -11.20460 -11.13960 -11.12592 -11.01937 -10.99613 -10.46246 -10.44883 -9.94865 -9.64860 -9.14837 -9.00149 -8.87595 -8.55520 -6.17498 -4.23316 0.55103 0.78282 0.82994 1.55947 1.94978 2.92178 3.21870 3.28836 3.29539 3.32363 3.90220 4.06085 4.19187 4.33259 4.54338 4.58798 4.62720 4.74013 4.84081 5.03311 5.05098 5.18031 5.21418 5.35921 5.45796 5.55663 5.56910 5.57635 5.67439 5.74904 5.87734 5.94971 6.18968 6.37060 6.40511 6.94517 7.23918 7.29523 7.75564 8.11618 8.80448 9.41965 10.93517 Molecular weight = 363.02amu Principal moments of inertia in cm(-1) A = 0.019732 B = 0.002342 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.686798 B =11952.346837 C =12331.989266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.588 3.412 12 O -0.965 6.965 13 O -0.963 6.963 14 N -1.115 6.115 15 C 0.192 3.808 16 H 0.105 0.895 17 C -0.126 4.126 18 C -0.081 4.081 19 C -0.068 4.068 20 C -0.097 4.097 21 C -0.064 4.064 22 C -0.105 4.105 23 C -0.025 4.025 24 Cl -0.052 7.052 25 C -0.028 4.028 26 Cl -0.057 7.057 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.666 -20.780 5.388 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.686 3.314 12 O -0.955 6.955 13 O -0.953 6.953 14 N -0.870 5.870 15 C 0.084 3.916 16 H 0.122 0.878 17 C -0.165 4.165 18 C -0.118 4.118 19 C -0.069 4.069 20 C -0.099 4.099 21 C -0.083 4.083 22 C -0.124 4.124 23 C -0.053 4.053 24 Cl -0.023 7.023 25 C -0.055 4.055 26 Cl -0.028 7.028 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.248 0.752 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.173 0.827 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.605 -21.009 5.586 23.767 hybrid contribution 0.991 0.605 -0.191 1.176 sum 10.596 -20.404 5.395 23.616 Atomic orbital electron populations 1.69963 1.06123 1.27153 1.49542 1.25073 0.94971 0.99579 0.94868 0.86420 0.79923 0.83176 0.77807 1.19630 1.20782 1.20779 1.21027 0.93088 0.89712 1.52174 0.91961 1.18969 0.92671 0.90539 0.98935 1.30460 1.13736 1.17898 1.10130 1.05755 0.74732 0.76632 0.74311 1.93564 1.71422 1.85288 1.45240 1.93520 1.71267 1.84923 1.45547 1.55967 1.52715 1.51987 1.26346 1.20056 0.89392 0.97087 0.85030 0.87756 1.22677 0.95466 0.94658 1.03682 1.21110 0.97365 0.96555 0.96757 1.20343 0.98371 0.91338 0.96892 1.21039 0.95912 0.96079 0.96873 1.21117 0.95636 0.98640 0.92902 1.21024 0.99555 0.90772 1.01001 1.20670 0.97774 0.90022 0.96850 1.98384 1.95240 1.35435 1.73282 1.20142 0.96095 0.89413 0.99878 1.98373 1.69177 1.39561 1.95692 0.92538 0.94861 0.94763 0.86311 0.85948 0.75238 0.89049 0.88656 0.89268 0.89652 0.82687 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.83 9.11 -34.44 -0.31 -14.14 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 10 C -0.59 -10.20 5.92 37.16 0.22 -9.98 16 11 S 2.59 41.78 5.38 -107.50 -0.58 41.20 16 12 O -0.96 -18.95 18.08 -57.54 -1.04 -19.99 16 13 O -0.96 -17.56 16.59 -57.54 -0.95 -18.52 16 14 N -1.12 -12.55 5.38 -4.99 -0.03 -12.57 16 15 C 0.19 1.89 3.30 -68.05 -0.22 1.66 16 16 H 0.10 0.95 7.26 -51.93 -0.38 0.57 16 17 C -0.13 -0.87 6.72 -25.32 -0.17 -1.04 16 18 C -0.08 -0.60 6.47 -26.85 -0.17 -0.77 16 19 C -0.07 -0.68 6.05 -104.16 -0.63 -1.31 16 20 C -0.10 -1.06 5.77 -104.11 -0.60 -1.66 16 21 C -0.06 -0.75 9.85 -39.53 -0.39 -1.14 16 22 C -0.10 -1.11 9.83 -39.60 -0.39 -1.50 16 23 C -0.03 -0.27 6.32 -39.51 -0.25 -0.52 16 24 Cl -0.05 -0.52 27.96 -51.86 -1.45 -1.97 16 25 C -0.03 -0.30 6.32 -39.49 -0.25 -0.55 16 26 Cl -0.06 -0.56 27.71 -51.86 -1.44 -1.99 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.12 1.77 7.51 -51.93 -0.39 1.38 16 31 H 0.12 1.90 8.14 -51.92 -0.42 1.47 16 32 H 0.41 3.89 8.83 -34.47 -0.30 3.59 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.16 1.92 7.01 -52.49 -0.37 1.55 16 38 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -33.54 362.98 -12.07 -45.61 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.36 Total: 1.19 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -3.41 Total: -28.93 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.71 Total: -37.67 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.99 Total: -38.50 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 41.78 SS G_CDS: -0.58 Total: 41.20 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -2.89 Total: -3.97 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.54 -12.07 -45.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079097926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.787 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds